Rorug06G0053800

Hemiasterlin resistant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000612
Physical Location & Seq
Reverse (-)
7440885 .. 7443786
2902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0053800.1

Sequence Viewer

Length: 1104 bp
ATGGCAAGCAAAGCTGATCACTTTTTCTCTTCATCCCCTATGGTCAACTTTCAAACATGGTGCGATCACCTGGCTTGGCTGTCCTCTGATATCACTGACATTCCCTACCCTAATACTCCCTGCAGGAGATGCGGGCACCCAAATGAAAACTGGTTTTGTTTATGCTGTAAGACTGTCCTTTGTGGTCGTTATGACAACATGCACATGATTCAACATTACGAGCAGACAAATCATTCTCTTGTAATCAGCTGCAGCAATCTATTAGTTTGGTGTTACTCCTGCCATTCTTTTATAGATCATAAAGTGATTCCACAACTGAAGGCTGCACTGTTATTGTCAAATACCTCCAAGGATCGTTCGTCATCAACCAAGCTAGAGAACCTCGATGGTCTAATTGCTGATGTAGATAATCTCATCTCTACATTTTCTGGCTTTGATCTTCATCAACTGGATACTCACTTCTGTGATGAACTCGCAATGGCCAAGGAGGGACTCCAAAAGATATTTGACTGTGACTTGGAAGCTTTAGCTGATCCCAAAGTCCAAGAGGAGTTCCTTACTCATTCAGCCACACTTATTTCTGATGATTCTTTCCCAATAGACTTGAAGGTTAAACTTTTATCTTTCCAATCTAATCTCTCAGAGGAAATGTCTGCTTTCGTGGAAGCTCAACATGAGTTGAATAAAGTGTCAGACCTATCAGCTTCACTTGCTGGGCAAAAGTTTGTGCTTGAATCGACCACTTCAAAGTATGCCGAAGTGAAAGTACTATTTCTTGCAGCAGACAAGAAACATGCCAAACTTACTGCCAAGATCAATGCTGCATCGAAGGCTGGAATTGAATTGTTTGAAGATTTAGCCATTGTTCGGATGCGAAGGGCTGAGTTTGAAGAGAAATTGGGTACCATTGAGGGAGTAATTACCACTGCTAGAGATAGATTTGTCTCAGACTCTTCGAAGCTTTCTACAATAAAGGGATTGACCAATGCAGCTGCCCGTTTAGTCACTCGACGAAAGTCAGCCTGGAATAGCTTAAGGATTACTTACTCAAATTTTGCATCACTTGGTCTGCATGATGAGGAAGCTTATTTGGTGGGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CHCH

Protein Analysis

367

Amino Acids

41.1

Weight (kDa)

5.78

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-UBP PF02148 41 - 101 2.2e-17 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 902
AccB1I GGYRCC 2 cut(s) 135, 902
AciI CCGC 1 cut(s) 132
AclWI GGATC 2 cut(s) 360, 527
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 1 cut(s) 1051
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 2 cut(s) 768, 904
AfiI CCNNNNNNNGG 1 cut(s) 867
AflII CTTAAG 1 cut(s) 1033
AgsI TTSAA 9 cut(s) 53, 212, 607, 682, 734, 747, 842, 851, 890
AjnI CCWGG 2 cut(s) 69, 1022
AleI CACNNNNGTG 1 cut(s) 462
Alw26I GTCTC 1 cut(s) 949
AlwI GGATC 2 cut(s) 360, 527
AoxI GGCC 1 cut(s) 480
ApeKI GCWGC 7 cut(s) 249, 252, 323, 779, 821, 989, 992
ApoI RAATTY 1 cut(s) 1051
Asp718I GGTACC 1 cut(s) 902
AsuHPI GGTGA 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 956
BaeGI GKGCMC 1 cut(s) 138
BalI TGGCCA 1 cut(s) 482
BanI GGYRCC 2 cut(s) 135, 902
BarI GAAGNNNNNNTAC 2 cut(s) 750, 782
BbvI GCAGC 7 cut(s) 236, 264, 310, 791, 808, 979, 1001
BccI CCATC 1 cut(s) 380
BciT130I CCWGG 2 cut(s) 71, 1024
BciVI GTATCC 1 cut(s) 445
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 949
BfaI CTAG 3 cut(s) 374, 930, 1102
BfmI CTRYAG 2 cut(s) 121, 250
BfrI CTTAAG 1 cut(s) 1033
BfuI GTATCC 1 cut(s) 445
BisI GCNGC 7 cut(s) 250, 253, 324, 780, 822, 990, 993
BlsI GCNGC 7 cut(s) 251, 254, 325, 781, 823, 991, 994
BmcAI AGTACT 1 cut(s) 768
Bme1390I CCNGG 2 cut(s) 71, 1024
BmiI GGNNCC 2 cut(s) 137, 904
BmrFI CCNGG 2 cut(s) 71, 1024
BmsI GCATC 4 cut(s) 119, 833, 861, 1067
BoxI GACNNNNGTC 1 cut(s) 1015
Bpu14I TTCGAA 1 cut(s) 956
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 2 cut(s) 348, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 867
Bse1I ACTGG 2 cut(s) 155, 453
Bse3DI GCAATG 1 cut(s) 483
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 2 cut(s) 71, 1024
BseDI CCNNGG 2 cut(s) 348, 483
BseGI GGATG 2 cut(s) 32, 876
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 867
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 3 cut(s) 654, 873, 960
BseNI ACTGG 2 cut(s) 155, 453
BseRI GAGGAG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 7 cut(s) 236, 264, 310, 791, 808, 979, 1001
BseYI CCCAGC 1 cut(s) 713
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 1 cut(s) 482
BshNI GGYRCC 2 cut(s) 135, 902
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 1 cut(s) 867
BsmAI GTCTC 1 cut(s) 949
BsmFI GGGAC 1 cut(s) 504
BsnI GGCC 1 cut(s) 482
Bsp119I TTCGAA 1 cut(s) 956
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 7 cut(s) 16, 64, 295, 352, 436, 532, 813
BspACI CCGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 3 cut(s) 653, 874, 959
BspLI GGNNCC 2 cut(s) 137, 904
BspMAI CTGCAG 2 cut(s) 125, 254
BspPI GGATC 2 cut(s) 360, 527
BspT104I TTCGAA 1 cut(s) 956
BspT107I GGYRCC 2 cut(s) 135, 902
BspTI CTTAAG 1 cut(s) 1033
BsrDI GCAATG 1 cut(s) 483
BsrI ACTGG 2 cut(s) 155, 453
BssECI CCNNGG 2 cut(s) 348, 483
BssMI GATC 7 cut(s) 16, 64, 295, 352, 436, 532, 813
BssT1I CCWWGG 2 cut(s) 348, 483
Bst2UI CCWGG 2 cut(s) 71, 1024
Bst4CI ACNGT 3 cut(s) 175, 330, 512
Bst6I CTCTTC 3 cut(s) 34, 885, 958
BstAFI CTTAAG 1 cut(s) 1033
BstAPI GCANNNNNTGC 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 956
BstC8I GCNNGC 2 cut(s) 7, 134
BstDEI CTNAG 3 cut(s) 640, 882, 946
BstF5I GGATG 2 cut(s) 32, 876
BstKTI GATC 7 cut(s) 19, 67, 298, 355, 439, 535, 816
BstMAI GTCTC 1 cut(s) 949
BstMBI GATC 7 cut(s) 16, 64, 295, 352, 436, 532, 813
BstMWI GCNNNNNNNGC 4 cut(s) 11, 129, 710, 830
BstNI CCWGG 2 cut(s) 71, 1024
BstNSI RCATGY 2 cut(s) 202, 797
BstPAI GACNNNNGTC 1 cut(s) 1015
BstSCI CCNGG 2 cut(s) 69, 1022
BstSFI CTRYAG 2 cut(s) 121, 250
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 7 cut(s) 236, 264, 310, 791, 808, 979, 1001
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 1 cut(s) 482
BtsCI GGATG 2 cut(s) 32, 876
BtsI GCAGTG 1 cut(s) 924
BtsIMutI CAGTG 3 cut(s) 93, 326, 924
Cac8I GCNNGC 2 cut(s) 7, 134
Csp6I GTAC 2 cut(s) 767, 903
CviAII CATG 6 cut(s) 57, 199, 205, 674, 794, 1073
CviQI GTAC 2 cut(s) 767, 903
DdeI CTNAG 3 cut(s) 640, 882, 946
DpnI GATC 7 cut(s) 18, 66, 297, 354, 438, 534, 815
DpnII GATC 7 cut(s) 16, 64, 295, 352, 436, 532, 813
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 3 cut(s) 34, 885, 958
EarI CTCTTC 3 cut(s) 34, 885, 958
Eco130I CCWWGG 2 cut(s) 348, 483
Eco32I GATATC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 338
EcoRII CCWGG 2 cut(s) 69, 1022
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 348, 483
ErhI CCWWGG 2 cut(s) 348, 483
FaeI CATG 6 cut(s) 60, 202, 208, 677, 797, 1076
FalI AAGNNNNNCTT 2 cut(s) 1027, 1059
FaqI GGGAC 1 cut(s) 504
FatI CATG 6 cut(s) 56, 198, 204, 673, 793, 1072
FauI CCCGC 1 cut(s) 125
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 7 cut(s) 250, 253, 324, 780, 822, 990, 993
FokI GGATG 2 cut(s) 19, 883
Fsp4HI GCNGC 7 cut(s) 250, 253, 324, 780, 822, 990, 993
FspBI CTAG 3 cut(s) 374, 930, 1102
GluI GCNGC 7 cut(s) 250, 253, 324, 780, 822, 990, 993
GsaI CCCAGC 1 cut(s) 717
HaeIII GGCC 1 cut(s) 482
Hin1II CATG 6 cut(s) 60, 202, 208, 677, 797, 1076
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 3 cut(s) 522, 959, 1083
HinfI GANTC 6 cut(s) 208, 307, 492, 587, 734, 950
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 6 cut(s) 88, 583, 643, 694, 870, 949
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 1 cut(s) 1014
HpyAV CCTTC 4 cut(s) 313, 601, 823, 870
HpyCH4III ACNGT 3 cut(s) 175, 330, 512
HpyCH4V TGCA 9 cut(s) 123, 202, 252, 326, 779, 824, 989, 1058, 1072
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 129, 710, 830
HpyF3I CTNAG 3 cut(s) 640, 882, 946
Hsp92II CATG 6 cut(s) 60, 202, 208, 677, 797, 1076
KpnI GGTACC 1 cut(s) 906
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 7 cut(s) 16, 64, 295, 352, 436, 532, 813
Lsp1109I GCAGC 7 cut(s) 236, 264, 310, 791, 808, 979, 1001
LweI GCATC 4 cut(s) 119, 833, 861, 1067
MaeI CTAG 3 cut(s) 374, 930, 1102
MaeIII GTNAC 3 cut(s) 272, 512, 1003
MalI GATC 7 cut(s) 18, 66, 297, 354, 438, 534, 815
MboI GATC 7 cut(s) 16, 64, 295, 352, 436, 532, 813
MboII GAAGA 5 cut(s) 21, 431, 863, 902, 945
MhlI GDGCHC 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 6 cut(s) 393, 837, 842, 896, 918, 1051
MluNI TGGCCA 1 cut(s) 482
MlyI GAGTC 2 cut(s) 486, 944
MnlI CCTC 8 cut(s) 94, 355, 392, 481, 541, 637, 904, 1072
Mox20I TGGCCA 1 cut(s) 482
MscI TGGCCA 1 cut(s) 482
MseI TTAA 2 cut(s) 612, 1034
MslI CAYNNNNRTG 3 cut(s) 141, 203, 462
Msp20I TGGCCA 1 cut(s) 482
MspA1I CMGCKG 2 cut(s) 249, 992
MspCI CTTAAG 1 cut(s) 1033
MspR9I CCNGG 2 cut(s) 71, 1024
MvaI CCWGG 2 cut(s) 71, 1024
MwoI GCNNNNNNNGC 4 cut(s) 11, 129, 710, 830
NdeII GATC 7 cut(s) 16, 64, 295, 352, 436, 532, 813
NlaIII CATG 6 cut(s) 60, 202, 208, 677, 797, 1076
NlaIV GGNNCC 2 cut(s) 137, 904
NmuCI GTSAC 2 cut(s) 512, 1003
NspI RCATGY 2 cut(s) 202, 797
NspV TTCGAA 1 cut(s) 956
OliI CACNNNNGTG 1 cut(s) 462
PfeI GAWTC 4 cut(s) 208, 307, 587, 734
PkrI GCNGC 7 cut(s) 251, 254, 325, 781, 823, 991, 994
PleI GAGTC 2 cut(s) 486, 944
PpsI GAGTC 2 cut(s) 486, 944
PshAI GACNNNNGTC 1 cut(s) 1015
Psp6I CCWGG 2 cut(s) 69, 1022
PspFI CCCAGC 1 cut(s) 713
PspGI CCWGG 2 cut(s) 69, 1022
PspN4I GGNNCC 2 cut(s) 137, 904
PstI CTGCAG 2 cut(s) 125, 254
PvuII CAGCTG 2 cut(s) 249, 992
RsaI GTAC 2 cut(s) 768, 904
RsaNI GTAC 2 cut(s) 767, 903
RseI CAYNNNNRTG 3 cut(s) 141, 203, 462
SaqAI TTAA 2 cut(s) 612, 1034
SatI GCNGC 7 cut(s) 250, 253, 324, 780, 822, 990, 993
Sau3AI GATC 7 cut(s) 16, 64, 295, 352, 436, 532, 813
SbfI CCTGCAGG 1 cut(s) 125
ScaI AGTACT 1 cut(s) 768
SchI GAGTC 2 cut(s) 486, 944
ScrFI CCNGG 2 cut(s) 71, 1024
SdaI CCTGCAGG 1 cut(s) 125
SduI GDGCHC 1 cut(s) 138
SfaNI GCATC 4 cut(s) 119, 833, 861, 1067
SfcI CTRYAG 2 cut(s) 121, 250
SfuI TTCGAA 1 cut(s) 956
SmiMI CAYNNNNRTG 3 cut(s) 141, 203, 462
SmlI CTYRAG 1 cut(s) 1033
SmoI CTYRAG 1 cut(s) 1033
Sse8387I CCTGCAGG 1 cut(s) 125
Sse9I AATT 6 cut(s) 393, 837, 842, 896, 918, 1051
SsiI CCGC 1 cut(s) 132
SspMI CTAG 3 cut(s) 374, 930, 1102
StyD4I CCNGG 2 cut(s) 69, 1022
StyI CCWWGG 2 cut(s) 348, 483
TaaI ACNGT 3 cut(s) 175, 330, 512
TaqI TCGA 5 cut(s) 384, 737, 827, 956, 1009
TasI AATT 6 cut(s) 393, 837, 842, 896, 918, 1051
TatI WGTACW 1 cut(s) 766
TfiI GAWTC 4 cut(s) 208, 307, 587, 734
Tru1I TTAA 2 cut(s) 612, 1034
Tru9I TTAA 2 cut(s) 612, 1034
TscAI CASTG 3 cut(s) 100, 333, 931
TseFI GTSAC 2 cut(s) 512, 1003
TseI GCWGC 7 cut(s) 249, 252, 323, 779, 821, 989, 992
Tsp45I GTSAC 2 cut(s) 512, 1003
TspDTI ATGAA 4 cut(s) 21, 159, 431, 483
TspRI CASTG 3 cut(s) 100, 333, 931
Vha464I CTTAAG 1 cut(s) 1033
XapI RAATTY 1 cut(s) 1051
XceI RCATGY 2 cut(s) 202, 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 147
XspI CTAG 3 cut(s) 374, 930, 1102
ZrmI AGTACT 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.