Rw1G028560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000612
Physical Location & Seq
Forward (+)
56239521 .. 56241646
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G028560.1

Sequence Viewer

Length: 960 bp
ATGGGTGGTTTTGACAACCCTTATACCTCTTCTGTTTCTTCAACAATGGCAGCTTTGCAAAAACGAATCATTGGTAGAAGATCAAAACCCCTAAATGCTACTGTCTCAACCCAAGAGTTCAACTCCTTTCACACCATTGACCGCAAGCTCTTCACCCGATTGGTGTTCAGTCTGGGCCGTGACCCGACCGAGTCGGCCCAAGTCATGGCTTTGTGGATGTGGCTGGAGCACAATGGCAACGAGTTTAACTTGGTCTACAAGGCACTGATGACTCTACCCAATACCCTTCTCAATGCCATGGCTGACGAGTCGGTTTTGGCCTTGAATTGCATTCAGAGCAATGTGTTTCCTTTCTCTGATTCAGGCATTACTCCTGACATTCCTATGCTGCAAGCCATGAGCAACCGTGGTGTCACACTCAGATTCTTTCATGAAAGTCGCGGCGAAATTGCGAGTGGAGTCATCACATTGCTGAAAGATGTTTGCTTGACAGTGTTTGGGGACTTGTTGTTTCAACCCCACCTGGAGAAAAAGGGTGGTGATGGTTTGTACAATCCAGTAATGGGTGATATTGCTCAGGGCAATGTGCAGTGGGTTCAGCGCCAGAATTTGAATGAGGAAATGGAGGAGGTTTTGAGCTGTTTGAATTTGAATGATCAGGAAGATCAAGAAGTATTCCATCAAGACAGGACTATTTTCCTAACATTTTCTAGAGGGTTTCCAATTGCAGAAAATAAGCTCAGAGAGTTCTTCACTAGGAGATTTGGGGAGATTATTGATGTAATCTGTATGCAAGAAGCTAAGGAACCTCTGTATGCCCGGCTTGTGCTACAATCTGCTTCCTCCATTCCGGTGGTTCTTGGTGGGAAAAGCATGGTCCAATTCTGCATTGATGGCAGGCATGTTCGGGCGAGGAAATTTGTGCTCAGGCATGCTCGCGCTGGGCAAAGGAGAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

36.08

Weight (kDa)

6.67

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 205
AccI GTMKAC 1 cut(s) 255
AccII CGCG 2 cut(s) 441, 939
AciI CCGC 2 cut(s) 142, 441
AcsI RAATTY 3 cut(s) 607, 646, 917
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 2 cut(s) 205, 563
AgsI TTSAA 7 cut(s) 42, 121, 325, 515, 613, 646, 652
AjnI CCWGG 1 cut(s) 522
AluBI AGCT 5 cut(s) 53, 148, 639, 739, 800
AluI AGCT 5 cut(s) 53, 148, 639, 739, 800
Alw21I GWGCWC 2 cut(s) 231, 927
Alw26I GTCTC 2 cut(s) 109, 948
AoxI GGCC 3 cut(s) 175, 195, 318
ApeKI GCWGC 2 cut(s) 50, 388
ApoI RAATTY 3 cut(s) 607, 646, 917
AspLEI GCGC 2 cut(s) 603, 941
AspS9I GGNCC 3 cut(s) 175, 196, 877
AsuC2I CCSGG 1 cut(s) 820
AsuHPI GGTGA 3 cut(s) 145, 551, 578
AvaII GGWCC 1 cut(s) 877
Bbv12I GWGCWC 2 cut(s) 231, 927
BbvI GCAGC 2 cut(s) 62, 375
BccI CCATC 3 cut(s) 536, 687, 887
BceAI ACGGC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 524
BclI TGATCA 1 cut(s) 655
BcnI CCSGG 1 cut(s) 820
BcoDI GTCTC 2 cut(s) 109, 948
BfaI CTAG 2 cut(s) 711, 756
BfoI RGCGCY 1 cut(s) 604
BisI GCNGC 3 cut(s) 51, 389, 442
BlsI GCNGC 3 cut(s) 52, 390, 443
Bme1390I CCNGG 2 cut(s) 524, 820
Bme18I GGWCC 1 cut(s) 877
BmgT120I GGNCC 3 cut(s) 175, 196, 877
BmiI GGNNCC 1 cut(s) 807
BmrFI CCNGG 2 cut(s) 524, 820
BplI GAGNNNNNCTC 2 cut(s) 107, 139
BpmI CTGGAG 2 cut(s) 245, 545
Bpu10I CCTNAGC 3 cut(s) 576, 801, 926
BpuMI CCSGG 1 cut(s) 820
BsaJI CCNNGG 2 cut(s) 297, 406
BsaWI WCCGGW 1 cut(s) 850
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 563
Bse1I ACTGG 1 cut(s) 557
Bse3DI GCAATG 3 cut(s) 346, 467, 589
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 2 cut(s) 297, 406
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 205, 563
BseMI GCAATG 3 cut(s) 346, 467, 589
BseMII CTCAG 4 cut(s) 433, 590, 754, 940
BseNI ACTGG 1 cut(s) 557
BseRI GAGGAG 1 cut(s) 641
BseXI GCAGC 2 cut(s) 62, 375
BseYI CCCAGC 1 cut(s) 941
BsgI GTGCAG 1 cut(s) 608
Bsh1236I CGCG 2 cut(s) 441, 939
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 3 cut(s) 177, 197, 320
BsiEI CGRYCG 1 cut(s) 189
BsiHKAI GWGCWC 2 cut(s) 231, 927
BsiSI CCGG 2 cut(s) 820, 851
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 2 cut(s) 205, 563
BsmAI GTCTC 2 cut(s) 109, 948
BsmFI GGGAC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 3 cut(s) 177, 197, 320
Bsp1286I GDGCHC 2 cut(s) 231, 927
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 3 cut(s) 80, 655, 664
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 2 cut(s) 142, 441
BspANI GGCC 3 cut(s) 177, 197, 320
BspCNI CTCAG 4 cut(s) 432, 589, 753, 939
BspFNI CGCG 2 cut(s) 441, 939
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 807
BspQI GCTCTTC 1 cut(s) 155
BsrDI GCAATG 3 cut(s) 346, 467, 589
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 1 cut(s) 557
BssECI CCNNGG 2 cut(s) 297, 406
BssMI GATC 3 cut(s) 80, 655, 664
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 3 cut(s) 103, 407, 493
Bst6I CTCTTC 2 cut(s) 34, 155
BstAUI TGTACA 1 cut(s) 549
BstC8I GCNNGC 5 cut(s) 146, 393, 899, 933, 937
BstDEI CTNAG 5 cut(s) 419, 576, 740, 801, 926
BstDSI CCRYGG 2 cut(s) 297, 406
BstF5I GGATG 1 cut(s) 222
BstFNI CGCG 2 cut(s) 441, 939
BstH2I RGCGCY 1 cut(s) 604
BstHHI GCGC 2 cut(s) 603, 941
BstKTI GATC 3 cut(s) 83, 658, 667
BstMAI GTCTC 2 cut(s) 109, 948
BstMBI GATC 3 cut(s) 80, 655, 664
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 2 cut(s) 336, 894
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 2 cut(s) 905, 935
BstSCI CCNGG 2 cut(s) 522, 818
BstUI CGCG 2 cut(s) 441, 939
BstV1I GCAGC 2 cut(s) 62, 375
BstXI CCANNNNNNTGG 1 cut(s) 853
BsuRI GGCC 3 cut(s) 177, 197, 320
BtgI CCRYGG 2 cut(s) 297, 406
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 3 cut(s) 263, 498, 596
Cac8I GCNNGC 5 cut(s) 146, 393, 899, 933, 937
CciI TCATGA 1 cut(s) 430
CfoI GCGC 2 cut(s) 603, 941
Cfr13I GGNCC 3 cut(s) 175, 196, 877
Csp6I GTAC 1 cut(s) 550
CviAII CATG 7 cut(s) 205, 298, 397, 431, 874, 902, 932
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 5 cut(s) 419, 576, 740, 801, 926
DpnI GATC 3 cut(s) 82, 657, 666
DpnII GATC 3 cut(s) 80, 655, 664
Eam1104I CTCTTC 2 cut(s) 34, 155
EarI CTCTTC 2 cut(s) 34, 155
Eco130I CCWWGG 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 877
EcoRII CCWGG 1 cut(s) 522
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 7 cut(s) 208, 301, 400, 434, 877, 905, 935
FaqI GGGAC 1 cut(s) 515
FatI CATG 7 cut(s) 204, 297, 396, 430, 873, 901, 931
FbaI TGATCA 1 cut(s) 655
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 51, 389, 442
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 3 cut(s) 51, 389, 442
FspBI CTAG 2 cut(s) 711, 756
GlaI GCGC 2 cut(s) 602, 940
GluI GCNGC 3 cut(s) 51, 389, 442
GsaI CCCAGC 1 cut(s) 945
GsuI CTGGAG 2 cut(s) 245, 545
HaeII RGCGCY 1 cut(s) 604
HaeIII GGCC 3 cut(s) 177, 197, 320
HapII CCGG 2 cut(s) 820, 851
HhaI GCGC 2 cut(s) 603, 941
Hin1II CATG 7 cut(s) 208, 301, 400, 434, 877, 905, 935
Hin6I GCGC 2 cut(s) 601, 939
HinP1I GCGC 2 cut(s) 601, 939
HinfI GANTC 7 cut(s) 66, 191, 271, 308, 359, 423, 459
HpaII CCGG 2 cut(s) 820, 851
HphI GGTGA 3 cut(s) 145, 551, 578
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 4 cut(s) 336, 358, 422, 743
Hpy188III TCNNGA 6 cut(s) 374, 431, 659, 668, 683, 711
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 3 cut(s) 103, 407, 493
HpyCH4V TGCA 7 cut(s) 58, 330, 391, 589, 728, 793, 888
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 894
HpyF3I CTNAG 5 cut(s) 419, 576, 740, 801, 926
Hsp92II CATG 7 cut(s) 208, 301, 400, 434, 877, 905, 935
HspAI GCGC 2 cut(s) 601, 939
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 3 cut(s) 80, 655, 664
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 1 cut(s) 226
Lsp1109I GCAGC 2 cut(s) 62, 375
MaeI CTAG 2 cut(s) 711, 756
MaeIII GTNAC 2 cut(s) 179, 412
MalI GATC 3 cut(s) 82, 657, 666
MboI GATC 3 cut(s) 80, 655, 664
MboII GAAGA 6 cut(s) 21, 30, 90, 142, 674, 742
MfeI CAATTG 1 cut(s) 723
MhlI GDGCHC 2 cut(s) 231, 927
MluCI AATT 7 cut(s) 325, 447, 607, 646, 723, 881, 917
MlyI GAGTC 4 cut(s) 200, 265, 317, 468
MnlI CCTC 8 cut(s) 37, 610, 619, 622, 707, 819, 853, 906
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 2 cut(s) 383, 851
MspI CCGG 2 cut(s) 820, 851
MspR9I CCNGG 2 cut(s) 524, 820
MunI CAATTG 1 cut(s) 723
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 1 cut(s) 524
MvnI CGCG 2 cut(s) 441, 939
MwoI GCNNNNNNNGC 2 cut(s) 336, 894
NciI CCSGG 1 cut(s) 820
NcoI CCATGG 1 cut(s) 297
NdeII GATC 3 cut(s) 80, 655, 664
NlaIII CATG 7 cut(s) 208, 301, 400, 434, 877, 905, 935
NlaIV GGNNCC 1 cut(s) 807
NmuCI GTSAC 2 cut(s) 179, 412
NspI RCATGY 2 cut(s) 905, 935
PaeI GCATGC 1 cut(s) 935
PagI TCATGA 1 cut(s) 430
PciSI GCTCTTC 1 cut(s) 155
PctI GAATGC 1 cut(s) 330
PfeI GAWTC 3 cut(s) 66, 359, 423
PflFI GACNNNGTC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 3 cut(s) 52, 390, 443
PleI GAGTC 4 cut(s) 199, 265, 316, 467
PpsI GAGTC 4 cut(s) 199, 265, 316, 467
Psp6I CCWGG 1 cut(s) 522
PspFI CCCAGC 1 cut(s) 941
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 807
PspPI GGNCC 3 cut(s) 175, 196, 877
PsyI GACNNNGTC 1 cut(s) 190
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
RseI CAYNNNNRTG 2 cut(s) 383, 851
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 3 cut(s) 51, 389, 442
Sau3AI GATC 3 cut(s) 80, 655, 664
Sau96I GGNCC 3 cut(s) 175, 196, 877
SchI GAGTC 4 cut(s) 200, 265, 317, 468
ScrFI CCNGG 2 cut(s) 524, 820
SduI GDGCHC 2 cut(s) 231, 927
SetI ASST 9 cut(s) 29, 55, 150, 525, 633, 641, 741, 802, 811
SinI GGWCC 1 cut(s) 877
SmiMI CAYNNNNRTG 2 cut(s) 383, 851
SphI GCATGC 1 cut(s) 935
Sse9I AATT 7 cut(s) 325, 447, 607, 646, 723, 881, 917
SsiI CCGC 2 cut(s) 142, 441
SspMI CTAG 2 cut(s) 711, 756
StyD4I CCNGG 2 cut(s) 522, 818
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 3 cut(s) 103, 407, 493
TaqII GACCGA 1 cut(s) 203
TasI AATT 7 cut(s) 325, 447, 607, 646, 723, 881, 917
TatI WGTACW 1 cut(s) 549
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 3 cut(s) 66, 359, 423
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 3 cut(s) 270, 498, 596
TseFI GTSAC 2 cut(s) 179, 412
TseI GCWGC 2 cut(s) 50, 388
Tsp45I GTSAC 2 cut(s) 179, 412
TspDTI ATGAA 2 cut(s) 419, 447
TspRI CASTG 3 cut(s) 270, 498, 596
Tth111I GACNNNGTC 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 877
XapI RAATTY 3 cut(s) 607, 646, 917
XbaI TCTAGA 1 cut(s) 710
XceI RCATGY 2 cut(s) 905, 935
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 2 cut(s) 711, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.