Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023830.1

Orthogroup ID

OG0000612

Physical Location & Seq

Genomic Coordinates Reverse (-)

2963 .. 4044

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023830.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atggccttctttgtctatccctgtgataatgttccccccgtctcaaaagaagagttcagcttgtttcacaccatcgaccgcaagctcttcacgcgattggtcttcggcctcggccgtgaccccgccgagtcggcccaagtcatggcgctgtggatgtggttggagcacaatgggaaggagtttaacttggtttacaagacactgatgactctacccaacacgcttctcaatgccatggccgaggagtccgttttggctttgaagtgcattcagagtgatgacttccctcgtcctaaccttgacatcactactgatattcctctgctccaagcaattagcaaaagtggtgtcacccttaaattcttccatgataatcggatagggatcatgcgaggtgtctctgcgctgttcaaagacatttgcttgaaagcgtttcaggacttgttgcttcatcctcaccaagagagaaaagccgatgctaatgtgtacaatccaacaatgggtgctattgttccacaggtttggaacccggcaatcagtggtgcaagttttcggaatttgggtggcggttttgatccttatgacctttcagttcagcgcgagattttgaacaaggaaatggaggaggttttgagccgtttgactttgaatgacgatgaagatgatggccgtggtgaagatcaagaagttgagccccatgagaggactattttcttgacattttctaaaggaaaatttggagatgttattgaagcgatctatatgcaagaagtcctttctcagcaaccattgtatgcccggcttgtggttcgctctgcttcctccattccggtggttcttgagggccaaaacaaggccaaattcaccattaaaggcaagcatgtttgggcgaggaaatatgtgcacaagactcaaacaacttcaccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

35.0

Weight (kDa)

5.94

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49290 AT5G13620
fragaria_vesca	FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica	MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica	Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata	RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora	Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii	Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa	Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha	Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana	Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccII	CGCG	2 cut(s)	94, 600
AciI	CCGC	3 cut(s)	79, 123, 567
AclWI	GGATC	2 cut(s)	392, 569
AcoI	YGGCCR	3 cut(s)	112, 237, 667
AcsI	RAATTY	4 cut(s)	359, 556, 734, 860
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	5 cut(s)	142, 500, 702, 805, 853
AgsI	TTSAA	6 cut(s)	262, 412, 427, 610, 649, 752
AluBI	AGCT	2 cut(s)	60, 85
AluI	AGCT	2 cut(s)	60, 85
Alw21I	GWGCWC	2 cut(s)	168, 906
Alw26I	GTCTC	2 cut(s)	46, 403
Alw44I	GTGCAC	1 cut(s)	902
AlwI	GGATC	2 cut(s)	392, 569
AoxI	GGCC	8 cut(s)	3, 106, 112, 132, 237, 667, 844, 855
ApaLI	GTGCAC	1 cut(s)	902
ApoI	RAATTY	4 cut(s)	359, 556, 734, 860
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AspLEI	GCGC	3 cut(s)	148, 406, 600
AspS9I	GGNCC	2 cut(s)	133, 844
AsuC2I	CCSGG	2 cut(s)	530, 799
AsuHPI	GGTGA	5 cut(s)	343, 449, 686, 856, 915
BaeGI	GKGCMC	1 cut(s)	906
BanII	GRGCYC	1 cut(s)	696
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	168, 906
BccI	CCATC	2 cut(s)	80, 659
BceAI	ACGGC	3 cut(s)	99, 621, 654
BcgI	CGANNNNNNTGC	2 cut(s)	745, 779
BcnI	CCSGG	2 cut(s)	530, 799
BcoDI	GTCTC	2 cut(s)	46, 403
BfoI	RGCGCY	1 cut(s)	149
BglI	GCCNNNNNGGC	1 cut(s)	131
Bme1390I	CCNGG	2 cut(s)	530, 799
BmgT120I	GGNCC	2 cut(s)	133, 844
BmiI	GGNNCC	1 cut(s)	527
BmrFI	CCNGG	2 cut(s)	530, 799
BmsI	GCATC	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	860
BpuMI	CCSGG	2 cut(s)	530, 799
BsaBI	GATNNNNATC	1 cut(s)	383
BsaJI	CCNNGG	4 cut(s)	109, 234, 240, 670
BsaWI	WCCGGW	1 cut(s)	829
Bsc4I	CCNNNNNNNGG	5 cut(s)	142, 500, 702, 805, 853
Bse8I	GATNNNNATC	1 cut(s)	383
BseDI	CCNNGG	4 cut(s)	109, 234, 240, 670
BseGI	GGATG	2 cut(s)	159, 451
BseJI	GATNNNNATC	1 cut(s)	383
BseLI	CCNNNNNNNGG	5 cut(s)	142, 500, 702, 805, 853
BseMII	CTCAG	1 cut(s)	794
BseRI	GAGGAG	2 cut(s)	257, 638
BseSI	GKGCMC	1 cut(s)	906
BseX3I	CGGCCG	1 cut(s)	112
Bsh1236I	CGCG	2 cut(s)	94, 600
Bsh1285I	CGRYCG	2 cut(s)	79, 115
BshFI	GGCC	8 cut(s)	5, 108, 114, 134, 239, 669, 846, 857
BsiEI	CGRYCG	2 cut(s)	79, 115
BsiHKAI	GWGCWC	2 cut(s)	168, 906
BsiSI	CCGG	3 cut(s)	530, 799, 830
BslI	CCNNNNNNNGG	5 cut(s)	142, 500, 702, 805, 853
BsmAI	GTCTC	2 cut(s)	46, 403
BsmBI	CGTCTC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	8 cut(s)	5, 108, 114, 134, 239, 669, 846, 857
Bsp1286I	GDGCHC	3 cut(s)	168, 696, 906
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	384, 574, 679, 756
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	3 cut(s)	79, 123, 567
BspANI	GGCC	8 cut(s)	5, 108, 114, 134, 239, 669, 846, 857
BspCNI	CTCAG	1 cut(s)	793
BspFNI	CGCG	2 cut(s)	94, 600
BspLI	GGNNCC	1 cut(s)	527
BspPI	GGATC	2 cut(s)	392, 569
BspQI	GCTCTTC	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	486
BssECI	CCNNGG	4 cut(s)	109, 234, 240, 670
BssMI	GATC	4 cut(s)	384, 574, 679, 756
BssT1I	CCWWGG	1 cut(s)	234
Bst6I	CTCTTC	2 cut(s)	45, 92
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	83, 878
BstDEI	CTNAG	1 cut(s)	780
BstDSI	CCRYGG	2 cut(s)	234, 670
BstF5I	GGATG	2 cut(s)	159, 451
BstFNI	CGCG	2 cut(s)	94, 600
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	3 cut(s)	148, 406, 600
BstKTI	GATC	4 cut(s)	387, 577, 682, 759
BstMAI	GTCTC	2 cut(s)	46, 403
BstMBI	GATC	4 cut(s)	384, 574, 679, 756
BstMCI	CGRYCG	2 cut(s)	79, 115
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 131
BstNSI	RCATGY	1 cut(s)	884
BstSCI	CCNGG	2 cut(s)	528, 797
BstSLI	GKGCMC	1 cut(s)	906
BstUI	CGCG	2 cut(s)	94, 600
BstV2I	GAAGAC	1 cut(s)	94
BstXI	CCANNNNNNTGG	2 cut(s)	522, 832
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	8 cut(s)	5, 108, 114, 134, 239, 669, 846, 857
BtgI	CCRYGG	2 cut(s)	234, 670
BtsCI	GGATG	2 cut(s)	159, 451
BtsIMutI	CAGTG	2 cut(s)	200, 544
Cac8I	GCNNGC	2 cut(s)	83, 878
CfoI	GCGC	3 cut(s)	148, 406, 600
Cfr13I	GGNCC	2 cut(s)	133, 844
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	6 cut(s)	142, 235, 368, 388, 698, 881
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	1 cut(s)	780
DpnI	GATC	4 cut(s)	386, 576, 681, 758
DpnII	GATC	4 cut(s)	384, 574, 679, 756
EaeI	YGGCCR	3 cut(s)	112, 237, 667
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	45, 92
EarI	CTCTTC	2 cut(s)	45, 92
EclXI	CGGCCG	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	696
Eco52I	CGGCCG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	6 cut(s)	145, 238, 371, 391, 701, 884
FalI	AAGNNNNNCTT	2 cut(s)	759, 791
FatI	CATG	6 cut(s)	141, 234, 367, 387, 697, 880
FauI	CCCGC	1 cut(s)	130
FokI	GGATG	2 cut(s)	166, 438
FriOI	GRGCYC	1 cut(s)	696
GlaI	GCGC	3 cut(s)	147, 405, 599
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	8 cut(s)	5, 108, 114, 134, 239, 669, 846, 857
HapII	CCGG	3 cut(s)	530, 799, 830
HhaI	GCGC	3 cut(s)	148, 406, 600
Hin1II	CATG	6 cut(s)	145, 238, 371, 391, 701, 884
Hin6I	GCGC	3 cut(s)	146, 404, 598
HinP1I	GCGC	3 cut(s)	146, 404, 598
HinfI	GANTC	4 cut(s)	128, 208, 245, 910
HpaII	CCGG	3 cut(s)	530, 799, 830
HphI	GGTGA	5 cut(s)	343, 449, 686, 856, 915
Hpy166II	GTNNAC	3 cut(s)	193, 487, 904
Hpy188I	TCNGA	3 cut(s)	273, 378, 555
Hpy188III	TCNNGA	4 cut(s)	437, 683, 715, 839
Hpy8I	GTNNAC	3 cut(s)	193, 487, 904
HpyAV	CCTTC	2 cut(s)	16, 169
HpyCH4V	TGCA	4 cut(s)	267, 545, 766, 904
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 131
HpyF3I	CTNAG	1 cut(s)	780
Hsp92II	CATG	6 cut(s)	145, 238, 371, 391, 701, 884
HspAI	GCGC	3 cut(s)	146, 404, 598
Kzo9I	GATC	4 cut(s)	384, 574, 679, 756
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	163, 330
LpnPI	CCDG	6 cut(s)	34, 422, 503, 543, 812, 843
LweI	GCATC	1 cut(s)	466
MaeIII	GTNAC	2 cut(s)	116, 349
MalI	GATC	4 cut(s)	386, 576, 681, 758
MboI	GATC	4 cut(s)	384, 574, 679, 756
MboII	GAAGA	6 cut(s)	62, 79, 94, 355, 671, 689
MhlI	GDGCHC	3 cut(s)	168, 696, 906
MluCI	AATT	5 cut(s)	333, 359, 556, 734, 860
MlyI	GAGTC	4 cut(s)	137, 202, 254, 904
MmeI	TCCRAC	2 cut(s)	141, 518
MseI	TTAA	4 cut(s)	183, 357, 870, 928
MslI	CAYNNNNRTG	1 cut(s)	830
MspI	CCGG	3 cut(s)	530, 799, 830
MspR9I	CCNGG	2 cut(s)	530, 799
Mva1269I	GAATGC	1 cut(s)	267
MvnI	CGCG	2 cut(s)	94, 600
MwoI	GCNNNNNNNGC	2 cut(s)	91, 131
NciI	CCSGG	2 cut(s)	530, 799
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	4 cut(s)	384, 574, 679, 756
NlaIII	CATG	6 cut(s)	145, 238, 371, 391, 701, 884
NlaIV	GGNNCC	1 cut(s)	527
NmeAIII	GCCGAG	3 cut(s)	90, 151, 265
NmuCI	GTSAC	2 cut(s)	116, 349
NspI	RCATGY	1 cut(s)	884
PciSI	GCTCTTC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	267
PflMI	CCANNNNNTGG	1 cut(s)	142
PleI	GAGTC	4 cut(s)	136, 202, 253, 904
PpsI	GAGTC	4 cut(s)	136, 202, 253, 904
PspN4I	GGNNCC	1 cut(s)	527
PspPI	GGNCC	2 cut(s)	133, 844
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	830
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	4 cut(s)	183, 357, 870, 928
Sau3AI	GATC	4 cut(s)	384, 574, 679, 756
Sau96I	GGNCC	2 cut(s)	133, 844
SchI	GAGTC	4 cut(s)	137, 202, 254, 904
ScrFI	CCNGG	2 cut(s)	530, 799
SduI	GDGCHC	3 cut(s)	168, 696, 906
SetI	ASST	8 cut(s)	62, 87, 300, 397, 522, 588, 630, 928
SfaNI	GCATC	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	830
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
Sse9I	AATT	5 cut(s)	333, 359, 556, 734, 860
SsiI	CCGC	3 cut(s)	79, 123, 567
StyD4I	CCNGG	2 cut(s)	528, 797
StyI	CCWWGG	1 cut(s)	234
TaqI	TCGA	1 cut(s)	75
TasI	AATT	5 cut(s)	333, 359, 556, 734, 860
TatI	WGTACW	1 cut(s)	486
Tru1I	TTAA	4 cut(s)	183, 357, 870, 928
Tru9I	TTAA	4 cut(s)	183, 357, 870, 928
TscAI	CASTG	2 cut(s)	207, 544
TseFI	GTSAC	2 cut(s)	116, 349
Tsp45I	GTSAC	2 cut(s)	116, 349
TspDTI	ATGAA	2 cut(s)	440, 672
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	2 cut(s)	207, 544
Van91I	CCANNNNNTGG	1 cut(s)	142
VneI	GTGCAC	1 cut(s)	902
XapI	RAATTY	4 cut(s)	359, 556, 734, 860
XceI	RCATGY	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.