Rh1DG316700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000612
Physical Location & Seq
Forward (+)
54300610 .. 54304595
3986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG316700.1

Sequence Viewer

Length: 954 bp
ATGGGTGGTTTTGAAAACCCTTATACCTCTTCTGTTTCTTCAACAATGGCAGCTTTGCAAAAACAAATCATTGGTAGAAGATCAAAACCCCTAAATGCTACTGTCTCAACCCAAGAGTTCAACTCCTTTCACACCATTGACCGCAAGCTCTTCACCCGATTGGTGTTCAGTCTGGGCCGTGACCCGACCGAGTCGGCCCAAGTCATGGCTTTGTGGATGTGGCTGGAGCACAATGGCAACGAGTTTAACTTGGTCTACAAGGCACTGATGACTCTACCCAATACCCTTCTCAATGCCATGGCTGACGAGTCGGTTTCGGCCTTGAATTGCATTCAGAGCAATGTGTTTCCTTTCTCTGATTCAGGCATTACTCCTGACATTCCTATGCTGCAAGCCATGAGCAACAGTGGTGTCACACTCAGATTCTTTCATGAAAGCCGCGGCGAAATTGCGAGTGGAGTCATCACATTGCTTAAAGATGTTTGCTTGAGAGTGTTTGGGGACTTGTTGTTTCAACCCCACCTGGAGAAAAAGGGTGGTGATGGTTTGTACAATCCAGTAATGGGTGATATTGCTCAGGGCAATGTGCAGTGGGGTAATGATATTCCATTTTATTGGCACCCACAAATGAATAGTGCTAATCTTTACTATTTGCGTGGAGGTTTTGATCCTCATAAGCTTGCAGTTCAGCGCCAGAATTTGAATGAGGAAATGGAGGAGGTTTTGAGCTGTTTGAATTTGAATGATCAGGAAGATCAAGAAGTATTCCCTCAAGACAGGACTATTTTCCTAACATTTTCTAGAGGGTTTCCAATTGCAGAAAAAAAGCTCAGAGAGTTCTTCACTAGGTATGCACCAATTGACCTGAATAATCACACTGTAAATTATGAGTACTACGTAGATAATTACATATTAATTATCTTGACAGGAGATTTGGGGAGATTATTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

36.03

Weight (kDa)

5.18

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 618
AccB7I CCANNNNNTGG 1 cut(s) 205
AccI GTMKAC 1 cut(s) 255
AccII CGCG 1 cut(s) 441
AciI CCGC 3 cut(s) 142, 439, 441
AclWI GGATC 1 cut(s) 662
AcsI RAATTY 2 cut(s) 697, 736
AfaI GTAC 2 cut(s) 551, 893
AfiI CCNNNNNNNGG 2 cut(s) 205, 563
AgsI TTSAA 8 cut(s) 14, 42, 121, 325, 515, 703, 736, 742
AjnI CCWGG 1 cut(s) 522
AluBI AGCT 5 cut(s) 53, 148, 679, 729, 829
AluI AGCT 5 cut(s) 53, 148, 679, 729, 829
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 662
AoxI GGCC 3 cut(s) 175, 195, 318
ApeKI GCWGC 2 cut(s) 50, 388
ApoI RAATTY 2 cut(s) 697, 736
ArsI GACNNNNNNTTYG 2 cut(s) 916, 948
AseI ATTAAT 1 cut(s) 914
AspLEI GCGC 1 cut(s) 693
AspS9I GGNCC 2 cut(s) 175, 196
AsuHPI GGTGA 3 cut(s) 145, 551, 578
BanI GGYRCC 1 cut(s) 618
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 62, 375
BccI CCATC 1 cut(s) 536
BceAI ACGGC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 524
BclI TGATCA 1 cut(s) 745
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 2 cut(s) 801, 846
BfoI RGCGCY 1 cut(s) 694
BisI GCNGC 4 cut(s) 51, 389, 439, 442
BlsI GCNGC 4 cut(s) 52, 390, 440, 443
BmcAI AGTACT 1 cut(s) 893
Bme1390I CCNGG 1 cut(s) 524
BmgT120I GGNCC 2 cut(s) 175, 196
BmiI GGNNCC 1 cut(s) 620
BmrFI CCNGG 1 cut(s) 524
BplI GAGNNNNNCTC 2 cut(s) 107, 139
BpmI CTGGAG 2 cut(s) 245, 545
Bpu10I CCTNAGC 1 cut(s) 576
BpuEI CTTGAG 2 cut(s) 508, 756
BsaAI YACGTR 1 cut(s) 898
BsaJI CCNNGG 2 cut(s) 297, 439
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 563
Bse1I ACTGG 1 cut(s) 557
Bse3DI GCAATG 3 cut(s) 346, 467, 589
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 2 cut(s) 297, 439
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 205, 563
BseMI GCAATG 3 cut(s) 346, 467, 589
BseMII CTCAG 3 cut(s) 433, 590, 844
BseNI ACTGG 1 cut(s) 557
BseRI GAGGAG 1 cut(s) 731
BseXI GCAGC 2 cut(s) 62, 375
BsgI GTGCAG 1 cut(s) 608
Bsh1236I CGCG 1 cut(s) 441
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 3 cut(s) 177, 197, 320
BshNI GGYRCC 1 cut(s) 618
BsiEI CGRYCG 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 231
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 2 cut(s) 205, 563
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 3 cut(s) 177, 197, 320
Bsp1286I GDGCHC 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 4 cut(s) 80, 667, 745, 754
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 3 cut(s) 142, 439, 441
BspANI GGCC 3 cut(s) 177, 197, 320
BspCNI CTCAG 3 cut(s) 432, 589, 843
BspFNI CGCG 1 cut(s) 441
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 620
BspPI GGATC 1 cut(s) 662
BspQI GCTCTTC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 618
BsrDI GCAATG 3 cut(s) 346, 467, 589
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 1 cut(s) 557
BssECI CCNNGG 2 cut(s) 297, 439
BssMI GATC 4 cut(s) 80, 667, 745, 754
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 3 cut(s) 103, 407, 880
Bst6I CTCTTC 2 cut(s) 34, 155
BstAUI TGTACA 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 898
BstC8I GCNNGC 3 cut(s) 146, 393, 681
BstDEI CTNAG 3 cut(s) 419, 576, 830
BstDSI CCRYGG 2 cut(s) 297, 439
BstF5I GGATG 1 cut(s) 222
BstFNI CGCG 1 cut(s) 441
BstH2I RGCGCY 1 cut(s) 694
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 4 cut(s) 83, 670, 748, 757
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 4 cut(s) 80, 667, 745, 754
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNI CCWGG 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 522
BstSNI TACGTA 1 cut(s) 898
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 2 cut(s) 62, 375
BstXI CCANNNNNNTGG 1 cut(s) 615
BsuRI GGCC 3 cut(s) 177, 197, 320
BtgI CCRYGG 2 cut(s) 297, 439
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 4 cut(s) 263, 412, 596, 876
Cac8I GCNNGC 3 cut(s) 146, 393, 681
CciI TCATGA 1 cut(s) 430
CfoI GCGC 1 cut(s) 693
Cfr13I GGNCC 2 cut(s) 175, 196
Cfr42I CCGCGG 1 cut(s) 442
Csp6I GTAC 2 cut(s) 550, 892
CviAII CATG 4 cut(s) 205, 298, 397, 431
CviQI GTAC 2 cut(s) 550, 892
DdeI CTNAG 3 cut(s) 419, 576, 830
DpnI GATC 4 cut(s) 82, 669, 747, 756
DpnII GATC 4 cut(s) 80, 667, 745, 754
Eam1104I CTCTTC 2 cut(s) 34, 155
EarI CTCTTC 2 cut(s) 34, 155
Eco105I TACGTA 1 cut(s) 898
Eco130I CCWWGG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 522
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 4 cut(s) 208, 301, 400, 434
FaqI GGGAC 1 cut(s) 515
FatI CATG 4 cut(s) 204, 297, 396, 430
FbaI TGATCA 1 cut(s) 745
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 4 cut(s) 51, 389, 439, 442
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 4 cut(s) 51, 389, 439, 442
FspBI CTAG 2 cut(s) 801, 846
GlaI GCGC 1 cut(s) 692
GluI GCNGC 4 cut(s) 51, 389, 439, 442
GsuI CTGGAG 2 cut(s) 245, 545
HaeII RGCGCY 1 cut(s) 694
HaeIII GGCC 3 cut(s) 177, 197, 320
HhaI GCGC 1 cut(s) 693
Hin1II CATG 4 cut(s) 208, 301, 400, 434
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 6 cut(s) 191, 271, 308, 359, 423, 459
HphI GGTGA 3 cut(s) 145, 551, 578
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 4 cut(s) 336, 358, 422, 833
Hpy188III TCNNGA 7 cut(s) 374, 431, 749, 758, 773, 801, 922
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 3 cut(s) 103, 407, 880
HpyCH4IV ACGT 1 cut(s) 897
HpyCH4V TGCA 7 cut(s) 58, 330, 391, 589, 683, 818, 854
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpyF3I CTNAG 3 cut(s) 419, 576, 830
HpySE526I ACGT 1 cut(s) 897
Hsp92II CATG 4 cut(s) 208, 301, 400, 434
HspAI GCGC 1 cut(s) 691
Ksp22I TGATCA 1 cut(s) 745
KspI CCGCGG 1 cut(s) 442
Kzo9I GATC 4 cut(s) 80, 667, 745, 754
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 1 cut(s) 226
Lsp1109I GCAGC 2 cut(s) 62, 375
MaeI CTAG 2 cut(s) 801, 846
MaeII ACGT 1 cut(s) 897
MaeIII GTNAC 2 cut(s) 179, 412
MalI GATC 4 cut(s) 82, 669, 747, 756
MboI GATC 4 cut(s) 80, 667, 745, 754
MboII GAAGA 6 cut(s) 21, 30, 90, 142, 764, 832
MfeI CAATTG 2 cut(s) 813, 858
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 9 cut(s) 325, 447, 697, 736, 813, 858, 883, 904, 915
MlyI GAGTC 4 cut(s) 200, 265, 317, 468
MnlI CCTC 8 cut(s) 37, 653, 681, 700, 709, 712, 780, 797
MseI TTAA 3 cut(s) 246, 474, 914
MslI CAYNNNNRTG 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 441
MspR9I CCNGG 1 cut(s) 524
MunI CAATTG 2 cut(s) 813, 858
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 1 cut(s) 524
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 336
NcoI CCATGG 1 cut(s) 297
NdeII GATC 4 cut(s) 80, 667, 745, 754
NlaIII CATG 4 cut(s) 208, 301, 400, 434
NlaIV GGNNCC 1 cut(s) 620
NmuCI GTSAC 2 cut(s) 179, 412
PagI TCATGA 1 cut(s) 430
PciSI GCTCTTC 1 cut(s) 155
PctI GAATGC 1 cut(s) 330
PfeI GAWTC 2 cut(s) 359, 423
PflFI GACNNNGTC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 4 cut(s) 52, 390, 440, 443
PleI GAGTC 4 cut(s) 199, 265, 316, 467
PpsI GAGTC 4 cut(s) 199, 265, 316, 467
Ppu21I YACGTR 1 cut(s) 898
PshBI ATTAAT 1 cut(s) 914
Psp6I CCWGG 1 cut(s) 522
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 620
PspPI GGNCC 2 cut(s) 175, 196
PsyI GACNNNGTC 1 cut(s) 190
RsaI GTAC 2 cut(s) 551, 893
RsaNI GTAC 2 cut(s) 550, 892
RseI CAYNNNNRTG 1 cut(s) 383
SacII CCGCGG 1 cut(s) 442
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 3 cut(s) 246, 474, 914
SatI GCNGC 4 cut(s) 51, 389, 439, 442
Sau3AI GATC 4 cut(s) 80, 667, 745, 754
Sau96I GGNCC 2 cut(s) 175, 196
ScaI AGTACT 1 cut(s) 893
SchI GAGTC 4 cut(s) 200, 265, 317, 468
ScrFI CCNGG 1 cut(s) 524
SduI GDGCHC 1 cut(s) 231
Sfr303I CCGCGG 1 cut(s) 442
SgrBI CCGCGG 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 2 cut(s) 487, 771
SmoI CTYRAG 2 cut(s) 487, 771
SnaBI TACGTA 1 cut(s) 898
Sse9I AATT 9 cut(s) 325, 447, 697, 736, 813, 858, 883, 904, 915
SsiI CCGC 3 cut(s) 142, 439, 441
SspMI CTAG 2 cut(s) 801, 846
StyD4I CCNGG 1 cut(s) 522
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 3 cut(s) 103, 407, 880
TaiI ACGT 1 cut(s) 900
TaqII GACCGA 1 cut(s) 203
TasI AATT 9 cut(s) 325, 447, 697, 736, 813, 858, 883, 904, 915
TatI WGTACW 2 cut(s) 549, 891
TauI GCSGC 2 cut(s) 441, 444
TfiI GAWTC 2 cut(s) 359, 423
Tru1I TTAA 3 cut(s) 246, 474, 914
Tru9I TTAA 3 cut(s) 246, 474, 914
TscAI CASTG 4 cut(s) 270, 412, 596, 883
TseFI GTSAC 2 cut(s) 179, 412
TseI GCWGC 2 cut(s) 50, 388
Tsp45I GTSAC 2 cut(s) 179, 412
TspDTI ATGAA 3 cut(s) 419, 447, 644
TspRI CASTG 4 cut(s) 270, 412, 596, 883
Tth111I GACNNNGTC 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 205
VspI ATTAAT 1 cut(s) 914
XapI RAATTY 2 cut(s) 697, 736
XbaI TCTAGA 1 cut(s) 800
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 2 cut(s) 801, 846
ZrmI AGTACT 1 cut(s) 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.