RLG00000013804

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000612
Physical Location & Seq
Reverse (-)
41305207 .. 41306418
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013804

Sequence Viewer

Length: 1128 bp
ATGAGCACCAATGCTGCTTTGGTGCACAATGCTATTAATGTTTCTGGCATTCCTTCACTAGAGCCCGAAGAAGATCGGACTATTGTCGTAACATTTTCTACTGTAGACCCTATTCCGGAACGTGAACTTAGAGACTTCTTTACTTGGTATATATATTGTACTACTGGGAATCAAATTACAGTTATGGATCATCATCATGTTATTGCTGCCATCCGTATGGAAAGTGTCCAACCCGGGGAGCGACCTTTTTGTGCCTACATTGTGTTTCGATATGCTTCTTTGGTTGCACGTGTCCTTGGTGGAAACCAGAGGATGACATTCCACATTAATGGGTTTATTGTTTCCGGTAGGAAATATGAGCAGTCTCTAGAAGAGTTTAACAAATTTCACAACATTGATCGGAGGCTCTTCACTCGTTTAATCTACGATCTGAGACGTGACCTGGATGAATCAGCAGGGGTCATGGCATTGTGGATGTCGCTGGAGCACACCAGCAAGGAGTTTAACAACTTGGTGAACAAGGCATTGACTCTACCCGACAGTGAGCTCAATGCCATGGCCGACGAGGCGGTAATAGCCTTGAATTACATTAAGATTGATGATATCCAGAGGGACACGGAAATCCCTAAGCTCCAAGCCATAAGTGAAAGTCCTGTCACCCTCAAGTTCTTCCATGACAACCGCCATGTGATCATTTGCGCAGTCATCAAGTTTCTCAAAGATGTTTGCTTGAGAGCTTTTCAGGACTTCCCTTATCAACCATACTACCATGCCAAGGCGAAGCTTATTGAAGAAACTAGCATCATTTTTCATCAAGAGAGCCAGATCGAGAATAAAGAAGCGGGGGAGACTTGTAGGAATTTGCCGTTGAGTGATAATGAGTGTGATGAACAAGAGAGGACTCTTTTCCTAACATTCTCTAAGGGGTTCCCCCTTTCGGAAAATGAAGTCCGAGAGTGCTTCACTAGGGAATTTGGTGATATTATTGATCTGATTCTTGATGGAAGAAGCAAAGTGTTCTTGAGCATAAATGGCAAGCACATTAGGGCCAAAAAATCTGTGCCTAGGCTGCGATCAAAATCACCAGAAGCATCATCCCCAACCATCATAAGGCCGACTACTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

376

Amino Acids

43.13

Weight (kDa)

5.8

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 700
AccI GTMKAC 1 cut(s) 105
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 3 cut(s) 569, 682, 842
AclWI GGATC 1 cut(s) 195
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 3 cut(s) 383, 859, 971
AcvI CACGTG 1 cut(s) 290
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 5 cut(s) 115, 235, 775, 937, 1110
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 2 cut(s) 583, 791
AjiI CACGTC 1 cut(s) 437
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 4 cut(s) 547, 631, 737, 784
AluI AGCT 4 cut(s) 547, 631, 737, 784
Alw21I GWGCWC 4 cut(s) 8, 27, 489, 549
Alw26I GTCTC 4 cut(s) 126, 369, 427, 842
Alw44I GTGCAC 1 cut(s) 23
AlwI GGATC 1 cut(s) 195
Ama87I CYCGRG 1 cut(s) 233
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 3 cut(s) 558, 1047, 1112
ApaLI GTGCAC 1 cut(s) 23
ApeKI GCWGC 3 cut(s) 14, 206, 1069
ApoI RAATTY 3 cut(s) 383, 859, 971
AseI ATTAAT 2 cut(s) 36, 327
AspA2I CCTAGG 1 cut(s) 1064
AspLEI GCGC 1 cut(s) 701
AspS9I GGNCC 1 cut(s) 1047
AsuC2I CCSGG 2 cut(s) 234, 235
AsuHPI GGTGA 4 cut(s) 526, 649, 989, 1074
AvaI CYCGRG 1 cut(s) 233
AvrII CCTAGG 1 cut(s) 1064
BaeGI GKGCMC 1 cut(s) 27
BanII GRGCYC 2 cut(s) 66, 549
BbrPI CACGTG 1 cut(s) 290
Bbv12I GWGCWC 4 cut(s) 8, 27, 489, 549
BbvI GCAGC 2 cut(s) 193, 1056
BccI CCATC 3 cut(s) 218, 995, 1112
BceAI ACGGC 1 cut(s) 850
BciT130I CCWGG 1 cut(s) 443
BclI TGATCA 1 cut(s) 690
BcnI CCSGG 2 cut(s) 234, 235
BcoDI GTCTC 4 cut(s) 126, 369, 427, 842
BfaI CTAG 5 cut(s) 59, 368, 798, 966, 1065
BfmI CTRYAG 1 cut(s) 102
BglI GCCNNNNNGGC 1 cut(s) 566
BisI GCNGC 3 cut(s) 15, 207, 1070
BlnI CCTAGG 1 cut(s) 1064
BlsI GCNGC 3 cut(s) 16, 208, 1071
Bme1390I CCNGG 3 cut(s) 234, 235, 443
BmeT110I CYCGRG 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 1047
BmiI GGNNCC 1 cut(s) 929
BmrFI CCNGG 3 cut(s) 234, 235, 443
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 810, 1100
BmuI ACTGGG 1 cut(s) 174
BoxI GACNNNNGTC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 503
Bpu10I CCTNAGC 1 cut(s) 627
BpuEI CTTGAG 3 cut(s) 647, 751, 1042
BpuMI CCSGG 2 cut(s) 234, 235
BsaAI YACGTR 1 cut(s) 290
BsaBI GATNNNNATC 2 cut(s) 192, 1078
BsaJI CCNNGG 6 cut(s) 233, 234, 295, 555, 774, 1064
BsaWI WCCGGW 2 cut(s) 115, 344
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 235, 775, 937, 1110
Bse1I ACTGG 1 cut(s) 169
Bse8I GATNNNNATC 2 cut(s) 192, 1078
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 6 cut(s) 233, 234, 295, 555, 774, 1064
BseGI GGATG 5 cut(s) 210, 318, 451, 480, 1094
BseJI GATNNNNATC 2 cut(s) 192, 1078
BseLI CCNNNNNNNGG 5 cut(s) 115, 235, 775, 937, 1110
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 27
BseXI GCAGC 2 cut(s) 193, 1056
BshFI GGCC 3 cut(s) 560, 1049, 1114
BsiHKAI GWGCWC 4 cut(s) 8, 27, 489, 549
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 3 cut(s) 116, 234, 345
BslFI GGGAC 1 cut(s) 626
BslI CCNNNNNNNGG 5 cut(s) 115, 235, 775, 937, 1110
BsmAI GTCTC 4 cut(s) 126, 369, 427, 842
BsmBI CGTCTC 1 cut(s) 427
BsmFI GGGAC 1 cut(s) 626
BsmI GAATGC 1 cut(s) 48
BsnI GGCC 3 cut(s) 560, 1049, 1114
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 5 cut(s) 8, 27, 66, 489, 549
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 8 cut(s) 73, 187, 397, 427, 690, 825, 988, 1073
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 3 cut(s) 569, 682, 842
BspANI GGCC 3 cut(s) 560, 1049, 1114
BspCNI CTCAG 1 cut(s) 423
BspEI TCCGGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 929
BspPI GGATC 1 cut(s) 195
BspQI GCTCTTC 1 cut(s) 413
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 6 cut(s) 233, 234, 295, 555, 774, 1064
BssMI GATC 8 cut(s) 73, 187, 397, 427, 690, 825, 988, 1073
BssT1I CCWWGG 4 cut(s) 295, 555, 774, 1064
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 3 cut(s) 103, 181, 542
Bst6I CTCTTC 2 cut(s) 366, 413
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 1037
BstDEI CTNAG 4 cut(s) 128, 431, 627, 921
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 5 cut(s) 210, 318, 451, 480, 1094
BstHHI GCGC 1 cut(s) 701
BstKTI GATC 8 cut(s) 76, 190, 400, 430, 693, 828, 991, 1076
BstMAI GTCTC 4 cut(s) 126, 369, 427, 842
BstMBI GATC 8 cut(s) 73, 187, 397, 427, 690, 825, 988, 1073
BstMWI GCNNNNNNNGC 4 cut(s) 566, 575, 1032, 1069
BstNI CCWGG 1 cut(s) 443
BstPAI GACNNNNGTC 1 cut(s) 83
BstSCI CCNGG 3 cut(s) 232, 233, 441
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 193, 1056
BstXI CCANNNNNNTGG 2 cut(s) 217, 329
BsuRI GGCC 3 cut(s) 560, 1049, 1114
BtgI CCRYGG 1 cut(s) 555
BtrI CACGTC 1 cut(s) 437
BtsCI GGATG 5 cut(s) 210, 318, 451, 480, 1094
BtsIMutI CAGTG 1 cut(s) 547
Cac8I GCNNGC 1 cut(s) 1037
CfoI GCGC 1 cut(s) 701
Cfr13I GGNCC 1 cut(s) 1047
Cfr9I CCCGGG 1 cut(s) 233
Csp6I GTAC 1 cut(s) 159
CviAII CATG 6 cut(s) 197, 463, 556, 674, 686, 770
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 4 cut(s) 128, 431, 627, 921
DpnI GATC 8 cut(s) 75, 189, 399, 429, 692, 827, 990, 1075
DpnII GATC 8 cut(s) 73, 187, 397, 427, 690, 825, 988, 1073
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 2 cut(s) 366, 413
EarI CTCTTC 2 cut(s) 366, 413
Ecl136II GAGCTC 1 cut(s) 547
Eco130I CCWWGG 4 cut(s) 295, 555, 774, 1064
Eco24I GRGCYC 2 cut(s) 66, 549
Eco32I GATATC 1 cut(s) 604
Eco53kI GAGCTC 1 cut(s) 547
Eco72I CACGTG 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 441
EcoRV GATATC 1 cut(s) 604
EcoT14I CCWWGG 4 cut(s) 295, 555, 774, 1064
EcoT38I GRGCYC 2 cut(s) 66, 549
ErhI CCWWGG 4 cut(s) 295, 555, 774, 1064
Esp3I CGTCTC 1 cut(s) 427
FaeI CATG 6 cut(s) 200, 466, 559, 677, 689, 773
FaqI GGGAC 1 cut(s) 626
FatI CATG 6 cut(s) 196, 462, 555, 673, 685, 769
FauI CCCGC 1 cut(s) 835
FbaI TGATCA 1 cut(s) 690
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 3 cut(s) 15, 207, 1070
FokI GGATG 5 cut(s) 197, 325, 458, 487, 1081
FriOI GRGCYC 2 cut(s) 66, 549
Fsp4HI GCNGC 3 cut(s) 15, 207, 1070
FspBI CTAG 5 cut(s) 59, 368, 798, 966, 1065
FspI TGCGCA 1 cut(s) 700
GlaI GCGC 1 cut(s) 700
GluI GCNGC 3 cut(s) 15, 207, 1070
GsuI CTGGAG 1 cut(s) 503
HaeIII GGCC 3 cut(s) 560, 1049, 1114
HapII CCGG 3 cut(s) 116, 234, 345
HhaI GCGC 1 cut(s) 701
Hin1II CATG 6 cut(s) 200, 466, 559, 677, 689, 773
Hin6I GCGC 1 cut(s) 699
HinP1I GCGC 1 cut(s) 699
HindIII AAGCTT 1 cut(s) 782
HinfI GANTC 5 cut(s) 169, 449, 529, 901, 994
HpaII CCGG 3 cut(s) 116, 234, 345
HphI GGTGA 4 cut(s) 526, 649, 989, 1074
Hpy166II GTNNAC 4 cut(s) 25, 106, 125, 517
Hpy188I TCNGA 6 cut(s) 78, 402, 432, 940, 953, 993
Hpy188III TCNNGA 8 cut(s) 116, 368, 607, 743, 815, 829, 998, 1021
Hpy8I GTNNAC 4 cut(s) 25, 106, 125, 517
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 3 cut(s) 103, 181, 542
HpyCH4IV ACGT 3 cut(s) 121, 289, 436
HpyCH4V TGCA 2 cut(s) 25, 287
HpyF10VI GCNNNNNNNGC 4 cut(s) 566, 575, 1032, 1069
HpyF3I CTNAG 4 cut(s) 128, 431, 627, 921
HpySE526I ACGT 3 cut(s) 121, 289, 436
Hsp92II CATG 6 cut(s) 200, 466, 559, 677, 689, 773
HspAI GCGC 1 cut(s) 699
Kpn2I TCCGGA 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 8 cut(s) 73, 187, 397, 427, 690, 825, 988, 1073
LguI GCTCTTC 1 cut(s) 413
LmnI GCTCC 3 cut(s) 238, 484, 636
Lsp1109I GCAGC 2 cut(s) 193, 1056
LweI GCATC 2 cut(s) 810, 1100
MaeI CTAG 5 cut(s) 59, 368, 798, 966, 1065
MaeII ACGT 3 cut(s) 121, 289, 436
MaeIII GTNAC 3 cut(s) 88, 437, 655
MalI GATC 8 cut(s) 75, 189, 399, 429, 692, 827, 990, 1075
MboI GATC 8 cut(s) 73, 187, 397, 427, 690, 825, 988, 1073
MboII GAAGA 7 cut(s) 80, 83, 383, 400, 661, 803, 1017
MhlI GDGCHC 5 cut(s) 8, 27, 66, 489, 549
MluCI AATT 5 cut(s) 174, 383, 583, 859, 971
MlyI GAGTC 2 cut(s) 523, 895
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 6 cut(s) 303, 396, 559, 603, 671, 891
MroI TCCGGA 1 cut(s) 115
MseI TTAA 6 cut(s) 36, 327, 378, 419, 504, 591
MslI CAYNNNNRTG 3 cut(s) 195, 215, 327
MspI CCGG 3 cut(s) 116, 234, 345
MspR9I CCNGG 3 cut(s) 234, 235, 443
Mva1269I GAATGC 1 cut(s) 48
MvaI CCWGG 1 cut(s) 443
MwoI GCNNNNNNNGC 4 cut(s) 566, 575, 1032, 1069
NciI CCSGG 2 cut(s) 234, 235
NcoI CCATGG 1 cut(s) 555
NdeII GATC 8 cut(s) 73, 187, 397, 427, 690, 825, 988, 1073
NlaIII CATG 6 cut(s) 200, 466, 559, 677, 689, 773
NlaIV GGNNCC 1 cut(s) 929
NmuCI GTSAC 2 cut(s) 437, 655
NsbI TGCGCA 1 cut(s) 700
PciSI GCTCTTC 1 cut(s) 413
PctI GAATGC 1 cut(s) 48
PfeI GAWTC 3 cut(s) 169, 449, 994
PkrI GCNGC 3 cut(s) 16, 208, 1071
PleI GAGTC 2 cut(s) 523, 895
PmaCI CACGTG 1 cut(s) 290
PmlI CACGTG 1 cut(s) 290
PpsI GAGTC 2 cut(s) 523, 895
Ppu21I YACGTR 1 cut(s) 290
PshAI GACNNNNGTC 1 cut(s) 83
PshBI ATTAAT 2 cut(s) 36, 327
Psp124BI GAGCTC 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 441
PspCI CACGTG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 929
PspPI GGNCC 1 cut(s) 1047
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 3 cut(s) 195, 215, 327
SacI GAGCTC 1 cut(s) 549
SapI GCTCTTC 1 cut(s) 413
SaqAI TTAA 6 cut(s) 36, 327, 378, 419, 504, 591
SatI GCNGC 3 cut(s) 15, 207, 1070
Sau3AI GATC 8 cut(s) 73, 187, 397, 427, 690, 825, 988, 1073
Sau96I GGNCC 1 cut(s) 1047
SchI GAGTC 2 cut(s) 523, 895
ScrFI CCNGG 3 cut(s) 234, 235, 443
SduI GDGCHC 5 cut(s) 8, 27, 66, 489, 549
SetI ASST 9 cut(s) 124, 247, 292, 439, 444, 549, 633, 739, 786
SfaNI GCATC 2 cut(s) 810, 1100
SfcI CTRYAG 1 cut(s) 102
SmaI CCCGGG 1 cut(s) 235
SmiMI CAYNNNNRTG 3 cut(s) 195, 215, 327
SmlI CTYRAG 3 cut(s) 662, 730, 1021
SmoI CTYRAG 3 cut(s) 662, 730, 1021
Sse9I AATT 5 cut(s) 174, 383, 583, 859, 971
SsiI CCGC 3 cut(s) 569, 682, 842
SspMI CTAG 5 cut(s) 59, 368, 798, 966, 1065
SstI GAGCTC 1 cut(s) 549
StyD4I CCNGG 3 cut(s) 232, 233, 441
StyI CCWWGG 4 cut(s) 295, 555, 774, 1064
TaaI ACNGT 3 cut(s) 103, 181, 542
TaiI ACGT 3 cut(s) 124, 292, 439
TaqI TCGA 2 cut(s) 268, 828
TasI AATT 5 cut(s) 174, 383, 583, 859, 971
TatI WGTACW 1 cut(s) 158
TfiI GAWTC 3 cut(s) 169, 449, 994
Tru1I TTAA 6 cut(s) 36, 327, 378, 419, 504, 591
Tru9I TTAA 6 cut(s) 36, 327, 378, 419, 504, 591
TscAI CASTG 1 cut(s) 547
TseFI GTSAC 2 cut(s) 437, 655
TseI GCWGC 3 cut(s) 14, 206, 1069
Tsp45I GTSAC 2 cut(s) 437, 655
TspDTI ATGAA 4 cut(s) 462, 800, 903, 960
TspGWI ACGGA 2 cut(s) 203, 632
TspMI CCCGGG 1 cut(s) 233
TspRI CASTG 1 cut(s) 547
VneI GTGCAC 1 cut(s) 23
VspI ATTAAT 2 cut(s) 36, 327
XapI RAATTY 3 cut(s) 383, 859, 971
XbaI TCTAGA 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmaI CCCGGG 1 cut(s) 233
XmaJI CCTAGG 1 cut(s) 1064
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 5 cut(s) 59, 368, 798, 966, 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.