FvH4_7g20311

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000612
Physical Location & Seq
Forward (+)
16538740 .. 16540052
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20311.t1

Sequence Viewer

Length: 957 bp
ATGGCATTCTTTTCTTTTCCCTCTGATAATGTCCCCGTCTCAAGAGAAGAGTTCAATCTGTTTCACTCCATTGACCGCAAGCTCTTCACCCGAATGGTCTTCGGCCTCGGCCTTGACCCTGCCGAGTCGGCACAAATCATGGCTCTGTGGATGTGGCTAGAGCACAATGGCAAGGAGTTTAACTTGGTGTACAAGACACTCATGACTCTTCCCAACACACTTCTTAATGCCATGGCCGAAGAGTCCGTTTTGGTCTTGATCTGCATTCAGAGCGACGAGTTCCATCGTCCTAATCTTGACATCAACACTGACATTCCTATTCTCCAAGCTATTAGCAAAAGTGGTGTAACCCTAAAATTCTTTCATGATAACCGAACCGGAATCATGCAAGGTGTCTCGGCACTGTTCAAGGACGTTTGCTTGAAAGCGTTTCAGGACTTGTTGATTCCTCCCCACCCTTACAATCCAACCATGGGTGCTAGTAGCAGTGCTGCTCCACAGTTTCGGAACCCGGCAGTGAATAGTAGCGCAACTCTTCAGAACTTGAGTGGAGGTTTGTTTCATCCTTATGACCTTGCAGTTCAGCGCGAGGTTTTGAACAAGGAAATGGAGGAGGTTCTGAGCCGTCTGACTTTGGATAACATTGAAGGTGAAGATCAAGAAGTTGAGCCCCATGAGAGGACAATTTTCTTGACATTTTCTAAAGGGTACCCCATTTCAGAAAATGAAATTAGAGAATTTATCACTAGAAAATTTGGGGATGTTATTGAAGCAATCCATATGCAAGAAGTCTTTGCTCAGCAACCACTGTATGCTCGGCTTGTGGTTCGTTCTGCTTCCTCCATTCCGGTGGTTCTTGAGGGGCAGACTAAGGCCAAATTCACCATTAGAGGCAAGCATGTTTGGGCGAGGAAGTACGTGCACAAGGGCGACAAGGCTCCAACAACTTCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

35.94

Weight (kDa)

5.95

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 708
AccB1I GGYRCC 1 cut(s) 708
AccII CGCG 1 cut(s) 588
AciI CCGC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 4 cut(s) 356, 737, 752, 878
AcuI CTGAAG 1 cut(s) 521
AfaI GTAC 3 cut(s) 191, 710, 917
AfiI CCNNNNNNNGG 2 cut(s) 473, 678
AgsI TTSAA 6 cut(s) 55, 409, 424, 598, 647, 770
AluBI AGCT 2 cut(s) 82, 329
AluI AGCT 2 cut(s) 82, 329
Alw21I GWGCWC 2 cut(s) 165, 924
Alw26I GTCTC 2 cut(s) 43, 400
Alw44I GTGCAC 1 cut(s) 920
AoxI GGCC 4 cut(s) 103, 109, 234, 873
ApaLI GTGCAC 1 cut(s) 920
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 4 cut(s) 356, 737, 752, 878
Asp718I GGTACC 1 cut(s) 708
AspLEI GCGC 2 cut(s) 530, 588
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 4 cut(s) 79, 662, 874, 942
BaeGI GKGCMC 1 cut(s) 924
BanI GGYRCC 1 cut(s) 708
BanII GRGCYC 1 cut(s) 672
BbsI GAAGAC 1 cut(s) 91
Bbv12I GWGCWC 2 cut(s) 165, 924
BbvI GCAGC 1 cut(s) 478
BccI CCATC 1 cut(s) 291
BceAI ACGGC 1 cut(s) 609
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 2 cut(s) 43, 400
BfaI CTAG 3 cut(s) 158, 480, 747
BglI GCCNNNNNGGC 1 cut(s) 128
BisI GCNGC 1 cut(s) 492
BlpI GCTNAGC 1 cut(s) 798
BlsI GCNGC 1 cut(s) 493
Bme1390I CCNGG 1 cut(s) 512
BmiI GGNNCC 3 cut(s) 509, 710, 939
BmrFI CCNGG 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 91
Bpu1102I GCTNAGC 1 cut(s) 798
BpuEI CTTGAG 3 cut(s) 25, 565, 878
BpuMI CCSGG 1 cut(s) 512
BsaAI YACGTR 1 cut(s) 919
BsaJI CCNNGG 3 cut(s) 106, 231, 471
BsaWI WCCGGW 2 cut(s) 377, 847
Bsc4I CCNNNNNNNGG 2 cut(s) 473, 678
BseDI CCNNGG 3 cut(s) 106, 231, 471
BseGI GGATG 3 cut(s) 156, 562, 766
BseLI CCNNNNNNNGG 2 cut(s) 473, 678
BseMII CTCAG 2 cut(s) 611, 812
BseRI GAGGAG 1 cut(s) 626
BseSI GKGCMC 1 cut(s) 924
BseXI GCAGC 1 cut(s) 478
Bsh1236I CGCG 1 cut(s) 588
BshFI GGCC 4 cut(s) 105, 111, 236, 875
BshNI GGYRCC 1 cut(s) 708
BsiHKAI GWGCWC 2 cut(s) 165, 924
BsiSI CCGG 3 cut(s) 378, 512, 848
BslFI GGGAC 1 cut(s) 17
BslI CCNNNNNNNGG 2 cut(s) 473, 678
BsmAI GTCTC 2 cut(s) 43, 400
BsmBI CGTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 17
BsmI GAATGC 2 cut(s) 5, 264
BsnI GGCC 4 cut(s) 105, 111, 236, 875
Bsp1286I GDGCHC 3 cut(s) 165, 672, 924
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 2 cut(s) 258, 655
Bsp1720I GCTNAGC 1 cut(s) 798
Bsp19I CCATGG 2 cut(s) 231, 471
BspACI CCGC 1 cut(s) 76
BspANI GGCC 4 cut(s) 105, 111, 236, 875
BspCNI CTCAG 2 cut(s) 612, 811
BspFNI CGCG 1 cut(s) 588
BspHI TCATGA 2 cut(s) 201, 364
BspLI GGNNCC 3 cut(s) 509, 710, 939
BspQI GCTCTTC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 708
BsrGI TGTACA 1 cut(s) 189
BssECI CCNNGG 3 cut(s) 106, 231, 471
BssMI GATC 2 cut(s) 258, 655
BssT1I CCWWGG 2 cut(s) 231, 471
Bst4CI ACNGT 3 cut(s) 405, 501, 810
Bst6I CTCTTC 5 cut(s) 42, 89, 213, 234, 540
BstAUI TGTACA 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 919
BstC8I GCNNGC 2 cut(s) 80, 896
BstDEI CTNAG 3 cut(s) 620, 798, 870
BstDSI CCRYGG 2 cut(s) 231, 471
BstF5I GGATG 3 cut(s) 156, 562, 766
BstFNI CGCG 1 cut(s) 588
BstHHI GCGC 2 cut(s) 530, 588
BstKTI GATC 2 cut(s) 261, 658
BstMAI GTCTC 2 cut(s) 43, 400
BstMBI GATC 2 cut(s) 258, 655
BstMWI GCNNNNNNNGC 2 cut(s) 128, 270
BstNSI RCATGY 1 cut(s) 902
BstSCI CCNGG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 924
BstUI CGCG 1 cut(s) 588
BstV1I GCAGC 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 850
BsuRI GGCC 4 cut(s) 105, 111, 236, 875
BtgI CCRYGG 2 cut(s) 231, 471
BtsCI GGATG 3 cut(s) 156, 562, 766
BtsI GCAGTG 2 cut(s) 493, 522
BtsIMutI CAGTG 5 cut(s) 306, 401, 493, 522, 806
Cac8I GCNNGC 2 cut(s) 80, 896
CciI TCATGA 2 cut(s) 201, 364
CfoI GCGC 2 cut(s) 530, 588
Csp6I GTAC 3 cut(s) 190, 709, 916
CviAII CATG 8 cut(s) 139, 202, 232, 365, 385, 472, 674, 899
CviQI GTAC 3 cut(s) 190, 709, 916
DdeI CTNAG 3 cut(s) 620, 798, 870
DpnI GATC 2 cut(s) 260, 657
DpnII GATC 2 cut(s) 258, 655
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 5 cut(s) 42, 89, 213, 234, 540
EarI CTCTTC 5 cut(s) 42, 89, 213, 234, 540
Eco130I CCWWGG 2 cut(s) 231, 471
Eco24I GRGCYC 1 cut(s) 672
Eco57I CTGAAG 1 cut(s) 521
EcoT14I CCWWGG 2 cut(s) 231, 471
EcoT38I GRGCYC 1 cut(s) 672
ErhI CCWWGG 2 cut(s) 231, 471
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 8 cut(s) 142, 205, 235, 368, 388, 475, 677, 902
FaqI GGGAC 1 cut(s) 17
FatI CATG 8 cut(s) 138, 201, 231, 364, 384, 471, 673, 898
FauNDI CATATG 1 cut(s) 780
Fnu4HI GCNGC 1 cut(s) 492
FokI GGATG 3 cut(s) 163, 549, 773
FriOI GRGCYC 1 cut(s) 672
Fsp4HI GCNGC 1 cut(s) 492
FspBI CTAG 3 cut(s) 158, 480, 747
GlaI GCGC 2 cut(s) 529, 587
GluI GCNGC 1 cut(s) 492
HaeIII GGCC 4 cut(s) 105, 111, 236, 875
HapII CCGG 3 cut(s) 378, 512, 848
HhaI GCGC 2 cut(s) 530, 588
Hin1II CATG 8 cut(s) 142, 205, 235, 368, 388, 475, 677, 902
Hin6I GCGC 2 cut(s) 528, 586
HinP1I GCGC 2 cut(s) 528, 586
HinfI GANTC 5 cut(s) 125, 205, 242, 381, 445
HpaII CCGG 3 cut(s) 378, 512, 848
HphI GGTGA 4 cut(s) 79, 662, 874, 942
Hpy166II GTNNAC 2 cut(s) 190, 922
Hpy188I TCNGA 7 cut(s) 25, 270, 507, 540, 621, 630, 721
Hpy188III TCNNGA 9 cut(s) 42, 202, 256, 296, 365, 434, 659, 691, 857
Hpy8I GTNNAC 2 cut(s) 190, 922
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 641
HpyCH4III ACNGT 3 cut(s) 405, 501, 810
HpyCH4IV ACGT 2 cut(s) 414, 918
HpyCH4V TGCA 5 cut(s) 264, 388, 578, 784, 922
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 270
HpyF3I CTNAG 3 cut(s) 620, 798, 870
HpySE526I ACGT 2 cut(s) 414, 918
Hsp92II CATG 8 cut(s) 142, 205, 235, 368, 388, 475, 677, 902
HspAI GCGC 2 cut(s) 528, 586
KpnI GGTACC 1 cut(s) 712
Kzo9I GATC 2 cut(s) 258, 655
LguI GCTCTTC 1 cut(s) 89
LmnI GCTCC 2 cut(s) 499, 943
LpnPI CCDG 5 cut(s) 132, 391, 419, 525, 861
Lsp1109I GCAGC 1 cut(s) 478
MaeI CTAG 3 cut(s) 158, 480, 747
MaeII ACGT 2 cut(s) 414, 918
MaeIII GTNAC 1 cut(s) 346
MalI GATC 2 cut(s) 260, 657
MboI GATC 2 cut(s) 258, 655
MboII GAAGA 7 cut(s) 59, 76, 91, 200, 251, 527, 665
MhlI GDGCHC 3 cut(s) 165, 672, 924
MluCI AATT 6 cut(s) 356, 684, 729, 737, 752, 878
MlyI GAGTC 3 cut(s) 134, 199, 251
MmeI TCCRAC 1 cut(s) 491
MseI TTAA 2 cut(s) 180, 225
MslI CAYNNNNRTG 3 cut(s) 92, 567, 848
MspI CCGG 3 cut(s) 378, 512, 848
MspR9I CCNGG 1 cut(s) 512
Mva1269I GAATGC 2 cut(s) 5, 264
MvnI CGCG 1 cut(s) 588
MwoI GCNNNNNNNGC 2 cut(s) 128, 270
NciI CCSGG 1 cut(s) 512
NcoI CCATGG 2 cut(s) 231, 471
NdeI CATATG 1 cut(s) 780
NdeII GATC 2 cut(s) 258, 655
NlaIII CATG 8 cut(s) 142, 205, 235, 368, 388, 475, 677, 902
NlaIV GGNNCC 3 cut(s) 509, 710, 939
NmeAIII GCCGAG 4 cut(s) 87, 148, 377, 796
NspI RCATGY 1 cut(s) 902
PagI TCATGA 2 cut(s) 201, 364
PciSI GCTCTTC 1 cut(s) 89
PctI GAATGC 2 cut(s) 5, 264
PfeI GAWTC 2 cut(s) 381, 445
PkrI GCNGC 1 cut(s) 493
PleI GAGTC 3 cut(s) 133, 199, 250
PpsI GAGTC 3 cut(s) 133, 199, 250
Ppu21I YACGTR 1 cut(s) 919
PspN4I GGNNCC 3 cut(s) 509, 710, 939
RsaI GTAC 3 cut(s) 191, 710, 917
RsaNI GTAC 3 cut(s) 190, 709, 916
RseI CAYNNNNRTG 3 cut(s) 92, 567, 848
SapI GCTCTTC 1 cut(s) 89
SaqAI TTAA 2 cut(s) 180, 225
SatI GCNGC 1 cut(s) 492
Sau3AI GATC 2 cut(s) 258, 655
SchI GAGTC 3 cut(s) 134, 199, 251
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 3 cut(s) 165, 672, 924
SmiMI CAYNNNNRTG 3 cut(s) 92, 567, 848
SmlI CTYRAG 3 cut(s) 40, 544, 857
SmoI CTYRAG 3 cut(s) 40, 544, 857
Sse9I AATT 6 cut(s) 356, 684, 729, 737, 752, 878
SsiI CCGC 1 cut(s) 76
SspMI CTAG 3 cut(s) 158, 480, 747
StyD4I CCNGG 1 cut(s) 510
StyI CCWWGG 2 cut(s) 231, 471
TaaI ACNGT 3 cut(s) 405, 501, 810
TaiI ACGT 2 cut(s) 417, 921
TasI AATT 6 cut(s) 356, 684, 729, 737, 752, 878
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 2 cut(s) 381, 445
Tru1I TTAA 2 cut(s) 180, 225
Tru9I TTAA 2 cut(s) 180, 225
TscAI CASTG 5 cut(s) 313, 408, 493, 522, 813
TseI GCWGC 1 cut(s) 491
TspDTI ATGAA 3 cut(s) 353, 551, 741
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 5 cut(s) 313, 408, 493, 522, 813
VneI GTGCAC 1 cut(s) 920
XapI RAATTY 4 cut(s) 356, 737, 752, 878
XceI RCATGY 1 cut(s) 902
XspI CTAG 3 cut(s) 158, 480, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.