RchiOBHm_Chr1g0364261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000612
Physical Location & Seq
Forward (+)
55484623 .. 55485563
941 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58895

Sequence Viewer

Length: 879 bp
ATGGCGCTGTGGATGTGGTTGGAGCACAATGGGAAGGAGTTTAACTTGGTTTACAAGACACTGATGACTCTACCCAACACGCTTCTCAATGCCATGGCCGAGGAGTCCGTTTTGGCTTTGAAGTGCATTCAGAGTGATGACTTCCCTCGTCCTAACCTTGACATCACTACTGATATTCCTCTGCTCCAAGCAATTAGCAAAAGTGGTGTCACCCTTAAATTCTTCCATGATAATCGAATAGGGATCATGCGAGGCGTCTCTGCGCTGTTCAAAGACATTTGCTTGAAAGCGTTTCAGGACTTGTTGCTTCATCCTCACCAAGAGAGAAAAGCCGATGCTAATGTGTACAATCCAACAATGGGTGCTATTGCTCCACAGGTTTGGAACCCGGCAATCAGTGGTGCAAGTCTTCGGAATTTGGGTGGCGGTTTTGATCCTTATGACCTTTCAGTTCAGCGCGAGATTTTGAACAAGGAAATGGAGGAGATTTTGAGCCGTTTGACTTTGAATGACGATGAAGATGATGGCCGTGGTGAAGATCAAGAAGTTGAGCCCCATGAGAGGACTATTTTCTTGACATTTTCTAAAGGGTACCCCATTTCTGAAAATGAAATAAGAGAATTTATCACTAAGTATGCACTTCCACCCCATCTGGCTTCATGTTTAGTATCTGAGTATAAAAAATTTGGAGATGTTATTGAAGCGATCTATATGCAAGAAGTCCTTTCTCAGCAACCATTGTATGCCCGGCTTGTGGTTCGCTCTGCTTCCTCCATTCCGGTGGTTCTTGAGGGCCAAAACAAGGCCAAATTCACCATTAAAGGCAAGCATGTTTGGGCGAGGAAATATGTGCACAAGACTCAAACAACTTCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

33.09

Weight (kDa)

5.93

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 591
AccB1I GGYRCC 1 cut(s) 591
AccII CGCG 1 cut(s) 459
AciI CCGC 1 cut(s) 426
AclWI GGATC 2 cut(s) 251, 428
AcoI YGGCCR 2 cut(s) 96, 526
AcsI RAATTY 5 cut(s) 218, 415, 620, 683, 809
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 2 cut(s) 347, 593
AfiI CCNNNNNNNGG 4 cut(s) 359, 561, 754, 802
AgsI TTSAA 6 cut(s) 121, 271, 286, 469, 508, 701
Alw21I GWGCWC 2 cut(s) 27, 855
Alw26I GTCTC 1 cut(s) 262
Alw44I GTGCAC 1 cut(s) 851
AlwI GGATC 2 cut(s) 251, 428
AoxI GGCC 4 cut(s) 96, 526, 793, 804
ApaLI GTGCAC 1 cut(s) 851
ApoI RAATTY 5 cut(s) 218, 415, 620, 683, 809
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
Asp718I GGTACC 1 cut(s) 591
AspLEI GCGC 3 cut(s) 7, 265, 459
AspS9I GGNCC 1 cut(s) 793
AsuC2I CCSGG 2 cut(s) 389, 748
AsuHPI GGTGA 5 cut(s) 202, 308, 545, 805, 864
BaeGI GKGCMC 1 cut(s) 855
BanI GGYRCC 1 cut(s) 591
BanII GRGCYC 1 cut(s) 555
BbsI GAAGAC 1 cut(s) 401
Bbv12I GWGCWC 2 cut(s) 27, 855
BccI CCATC 2 cut(s) 518, 657
BceAI ACGGC 2 cut(s) 480, 513
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BcnI CCSGG 2 cut(s) 389, 748
BcoDI GTCTC 1 cut(s) 262
BfoI RGCGCY 1 cut(s) 8
Bme1390I CCNGG 2 cut(s) 389, 748
BmgT120I GGNCC 1 cut(s) 793
BmiI GGNNCC 2 cut(s) 386, 593
BmrFI CCNGG 2 cut(s) 389, 748
BmsI GCATC 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 809
BpuMI CCSGG 2 cut(s) 389, 748
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 3 cut(s) 93, 99, 529
BsaWI WCCGGW 1 cut(s) 778
Bsc4I CCNNNNNNNGG 4 cut(s) 359, 561, 754, 802
BseDI CCNNGG 3 cut(s) 93, 99, 529
BseGI GGATG 2 cut(s) 18, 310
BseLI CCNNNNNNNGG 4 cut(s) 359, 561, 754, 802
BseMII CTCAG 2 cut(s) 663, 743
BseRI GAGGAG 2 cut(s) 116, 497
BseSI GKGCMC 1 cut(s) 855
Bsh1236I CGCG 1 cut(s) 459
BshFI GGCC 4 cut(s) 98, 528, 795, 806
BshNI GGYRCC 1 cut(s) 591
BsiHKAI GWGCWC 2 cut(s) 27, 855
BsiSI CCGG 3 cut(s) 389, 748, 779
BslI CCNNNNNNNGG 4 cut(s) 359, 561, 754, 802
BsmAI GTCTC 1 cut(s) 262
BsmBI CGTCTC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 4 cut(s) 98, 528, 795, 806
Bsp1286I GDGCHC 3 cut(s) 27, 555, 855
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 4 cut(s) 243, 433, 538, 705
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 1 cut(s) 426
BspANI GGCC 4 cut(s) 98, 528, 795, 806
BspCNI CTCAG 2 cut(s) 664, 742
BspFNI CGCG 1 cut(s) 459
BspLI GGNNCC 2 cut(s) 386, 593
BspPI GGATC 2 cut(s) 251, 428
BspT107I GGYRCC 1 cut(s) 591
BsrGI TGTACA 1 cut(s) 345
BssECI CCNNGG 3 cut(s) 93, 99, 529
BssMI GATC 4 cut(s) 243, 433, 538, 705
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 93
BstACI GRCGYC 1 cut(s) 255
BstAUI TGTACA 1 cut(s) 345
BstC8I GCNNGC 1 cut(s) 827
BstDEI CTNAG 3 cut(s) 630, 672, 729
BstDSI CCRYGG 2 cut(s) 93, 529
BstF5I GGATG 2 cut(s) 18, 310
BstFNI CGCG 1 cut(s) 459
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 265, 459
BstKTI GATC 4 cut(s) 246, 436, 541, 708
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 4 cut(s) 243, 433, 538, 705
BstNSI RCATGY 1 cut(s) 833
BstSCI CCNGG 2 cut(s) 387, 746
BstSLI GKGCMC 1 cut(s) 855
BstUI CGCG 1 cut(s) 459
BstV2I GAAGAC 1 cut(s) 401
BstXI CCANNNNNNTGG 2 cut(s) 381, 781
BsuRI GGCC 4 cut(s) 98, 528, 795, 806
BtgI CCRYGG 2 cut(s) 93, 529
BtsCI GGATG 2 cut(s) 18, 310
BtsIMutI CAGTG 2 cut(s) 59, 403
Cac8I GCNNGC 1 cut(s) 827
CfoI GCGC 3 cut(s) 7, 265, 459
Cfr13I GGNCC 1 cut(s) 793
CseI GACGC 1 cut(s) 244
Csp6I GTAC 2 cut(s) 346, 592
CviAII CATG 6 cut(s) 94, 227, 247, 557, 660, 830
CviQI GTAC 2 cut(s) 346, 592
DdeI CTNAG 3 cut(s) 630, 672, 729
DpnI GATC 4 cut(s) 245, 435, 540, 707
DpnII GATC 4 cut(s) 243, 433, 538, 705
EaeI YGGCCR 2 cut(s) 96, 526
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 555
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 262
FaeI CATG 6 cut(s) 97, 230, 250, 560, 663, 833
FalI AAGNNNNNCTT 2 cut(s) 708, 740
FatI CATG 6 cut(s) 93, 226, 246, 556, 659, 829
FokI GGATG 2 cut(s) 25, 297
FriOI GRGCYC 1 cut(s) 555
GlaI GCGC 3 cut(s) 6, 264, 458
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 98, 528, 795, 806
HapII CCGG 3 cut(s) 389, 748, 779
HgaI GACGC 1 cut(s) 244
HhaI GCGC 3 cut(s) 7, 265, 459
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 6 cut(s) 97, 230, 250, 560, 663, 833
Hin6I GCGC 3 cut(s) 5, 263, 457
HinP1I GCGC 3 cut(s) 5, 263, 457
HinfI GANTC 3 cut(s) 67, 104, 859
HpaII CCGG 3 cut(s) 389, 748, 779
HphI GGTGA 5 cut(s) 202, 308, 545, 805, 864
Hpy166II GTNNAC 3 cut(s) 52, 346, 853
Hpy188I TCNGA 4 cut(s) 132, 414, 604, 673
Hpy188III TCNNGA 4 cut(s) 296, 542, 574, 788
Hpy8I GTNNAC 3 cut(s) 52, 346, 853
HpyAV CCTTC 1 cut(s) 28
HpyCH4V TGCA 5 cut(s) 126, 404, 638, 715, 853
HpyF3I CTNAG 3 cut(s) 630, 672, 729
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 6 cut(s) 97, 230, 250, 560, 663, 833
HspAI GCGC 3 cut(s) 5, 263, 457
KpnI GGTACC 1 cut(s) 595
Kzo9I GATC 4 cut(s) 243, 433, 538, 705
LmnI GCTCC 3 cut(s) 22, 189, 376
LpnPI CCDG 6 cut(s) 281, 362, 402, 638, 761, 792
LweI GCATC 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 208
MalI GATC 4 cut(s) 245, 435, 540, 707
MboI GATC 4 cut(s) 243, 433, 538, 705
MboII GAAGA 4 cut(s) 214, 401, 530, 548
MhlI GDGCHC 3 cut(s) 27, 555, 855
MluCI AATT 6 cut(s) 192, 218, 415, 620, 683, 809
MlyI GAGTC 3 cut(s) 61, 113, 853
MmeI TCCRAC 1 cut(s) 377
MseI TTAA 4 cut(s) 42, 216, 819, 877
MslI CAYNNNNRTG 1 cut(s) 779
MspI CCGG 3 cut(s) 389, 748, 779
MspR9I CCNGG 2 cut(s) 389, 748
Mva1269I GAATGC 1 cut(s) 126
MvnI CGCG 1 cut(s) 459
NciI CCSGG 2 cut(s) 389, 748
NcoI CCATGG 1 cut(s) 93
NdeII GATC 4 cut(s) 243, 433, 538, 705
NlaIII CATG 6 cut(s) 97, 230, 250, 560, 663, 833
NlaIV GGNNCC 2 cut(s) 386, 593
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 1 cut(s) 833
PctI GAATGC 1 cut(s) 126
PleI GAGTC 3 cut(s) 61, 112, 853
PpsI GAGTC 3 cut(s) 61, 112, 853
PspN4I GGNNCC 2 cut(s) 386, 593
PspPI GGNCC 1 cut(s) 793
RsaI GTAC 2 cut(s) 347, 593
RsaNI GTAC 2 cut(s) 346, 592
RseI CAYNNNNRTG 1 cut(s) 779
SaqAI TTAA 4 cut(s) 42, 216, 819, 877
Sau3AI GATC 4 cut(s) 243, 433, 538, 705
Sau96I GGNCC 1 cut(s) 793
SchI GAGTC 3 cut(s) 61, 113, 853
ScrFI CCNGG 2 cut(s) 389, 748
SduI GDGCHC 3 cut(s) 27, 555, 855
SetI ASST 4 cut(s) 159, 381, 447, 877
SfaNI GCATC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
Sse9I AATT 6 cut(s) 192, 218, 415, 620, 683, 809
SsiI CCGC 1 cut(s) 426
StyD4I CCNGG 2 cut(s) 387, 746
StyI CCWWGG 1 cut(s) 93
TaqI TCGA 1 cut(s) 235
TasI AATT 6 cut(s) 192, 218, 415, 620, 683, 809
TatI WGTACW 1 cut(s) 345
Tru1I TTAA 4 cut(s) 42, 216, 819, 877
Tru9I TTAA 4 cut(s) 42, 216, 819, 877
TscAI CASTG 2 cut(s) 66, 403
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 4 cut(s) 299, 531, 624, 648
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 2 cut(s) 66, 403
VneI GTGCAC 1 cut(s) 851
XapI RAATTY 5 cut(s) 218, 415, 620, 683, 809
XceI RCATGY 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.