Rh2BG096400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000612
Physical Location & Seq
Reverse (-)
7600255 .. 7601115
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG096400.1

Sequence Viewer

Length: 861 bp
ATGGCCTCAAACTCGGTACCTTCTTTTTTGATGAAACAGGAGGTGTACCTATTTCATGCAATGGACAGAGAGCTCTACAGCATTCTGGTGATCCTTCTCTGTCGCGATCCAGTGGAGTCTATGAAGGTTATGGCCTTGTGGCTCTGGCTGGAGAAGTTGGGGTTTCGAAATGTTGTGAAGAGGATGCTGGCTTTACCTCTCATCTTGATCAATGAACTAGCAGATGAGACAGTCACATGCCTCAATGCCATCAATGGAACCCTTTTCTCCTACTTATCCGAAAGCTATGACATTCCACTCCTACAAGCCTTCATGACCAGAGAAATTTCTGTACACTTCTTCTATGAACACCGCCTGGTTGCTGCCATGGGTATCGCCGAAGTTGGCAGGGATGTCTGCGTCAAAGCTTTAAGTGACATCATGGCACATGCCATTGAAAGAAATAACCTTGCTTATCAGAACGCAACAGCAGCAAATCAAAGCCAGGGGATGCTATCACCTTCCAATATTCGCCAACAGCCACCGCCGGTGAGAAGAAACGAGGTGCCACCACAGGATAGGACCATGTTTGTCACATTCTCTAAGGGGTACCCAGTTCATGAGTTTGAGGTGATACAGTTCTTTACTAGACTTTATGGAGATTGCATTGAGTCTTTGCAGATGCAGGAAGTGCAGCCTTTTGAGCAAGCACTGTATGGGATAATTGTGTTTTATTCTGCTAATACTGTTGAAGCCATACTCAATGGTATGAGCAAGGCAAAGTTCACCATAAATGGGAAGCATGTATGGGTGAGAAAATATGTGGCAAGACGCACAAGGGCTCCTTCGGTTCCACCCATGATGTGGCCTCAAAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.78

Weight (kDa)

7.7

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 16, 588
AccB1I GGYRCC 3 cut(s) 16, 544, 588
AccB7I CCANNNNNTGG 1 cut(s) 843
AccII CGCG 1 cut(s) 105
AciI CCGC 2 cut(s) 352, 524
AclWI GGATC 2 cut(s) 85, 101
AcsI RAATTY 1 cut(s) 324
AfaI GTAC 4 cut(s) 18, 47, 333, 590
AfiI CCNNNNNNNGG 2 cut(s) 774, 843
AgsI TTSAA 2 cut(s) 437, 731
AjnI CCWGG 2 cut(s) 354, 483
AluBI AGCT 3 cut(s) 73, 285, 407
AluI AGCT 3 cut(s) 73, 285, 407
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 2 cut(s) 85, 101
AoxI GGCC 3 cut(s) 3, 132, 845
ApeKI GCWGC 3 cut(s) 362, 470, 673
ApoI RAATTY 1 cut(s) 324
Asp718I GGTACC 2 cut(s) 16, 588
AspS9I GGNCC 1 cut(s) 561
AsuHPI GGTGA 6 cut(s) 100, 489, 541, 622, 757, 802
AsuII TTCGAA 1 cut(s) 166
AvaII GGWCC 1 cut(s) 561
BanI GGYRCC 3 cut(s) 16, 544, 588
BanII GRGCYC 2 cut(s) 75, 823
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 3 cut(s) 349, 482, 685
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 2 cut(s) 356, 485
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 2 cut(s) 218, 627
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 3 cut(s) 363, 471, 674
BlsI GCNGC 3 cut(s) 364, 472, 675
Bme1390I CCNGG 2 cut(s) 356, 485
Bme18I GGWCC 1 cut(s) 561
BmgT120I GGNCC 1 cut(s) 561
BmiI GGNNCC 6 cut(s) 18, 259, 546, 590, 822, 831
BmrFI CCNGG 2 cut(s) 356, 485
BmrI ACTGGG 1 cut(s) 587
BmsI GCATC 3 cut(s) 174, 480, 651
BmuI ACTGGG 1 cut(s) 587
BpmI CTGGAG 1 cut(s) 170
Bpu14I TTCGAA 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 366, 484
BsaXI ACNNNNNCTCC 2 cut(s) 805, 835
Bsc4I CCNNNNNNNGG 2 cut(s) 774, 843
Bse118I RCCGGY 1 cut(s) 526
Bse1I ACTGG 2 cut(s) 110, 593
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 2 cut(s) 356, 485
BseDI CCNNGG 2 cut(s) 366, 484
BseGI GGATG 3 cut(s) 189, 397, 495
BseLI CCNNNNNNNGG 2 cut(s) 774, 843
BseMI GCAATG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 110, 593
BseXI GCAGC 3 cut(s) 349, 482, 685
BsgI GTGCAG 1 cut(s) 692
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 3 cut(s) 5, 134, 847
BshNI GGYRCC 3 cut(s) 16, 544, 588
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 527
BslI CCNNNNNNNGG 2 cut(s) 774, 843
BsmAI GTCTC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 3 cut(s) 5, 134, 847
Bsp119I TTCGAA 1 cut(s) 166
Bsp1286I GDGCHC 2 cut(s) 75, 823
Bsp1407I TGTACA 1 cut(s) 331
Bsp143I GATC 3 cut(s) 90, 106, 207
Bsp19I CCATGG 1 cut(s) 366
Bsp68I TCGCGA 1 cut(s) 105
BspACI CCGC 2 cut(s) 352, 524
BspANI GGCC 3 cut(s) 5, 134, 847
BspFNI CGCG 1 cut(s) 105
BspHI TCATGA 2 cut(s) 312, 598
BspLI GGNNCC 6 cut(s) 18, 259, 546, 590, 822, 831
BspPI GGATC 2 cut(s) 85, 101
BspT104I TTCGAA 1 cut(s) 166
BspT107I GGYRCC 3 cut(s) 16, 544, 588
BsrDI GCAATG 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 526
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 2 cut(s) 110, 593
BssAI RCCGGY 1 cut(s) 526
BssECI CCNNGG 2 cut(s) 366, 484
BssMI GATC 3 cut(s) 90, 106, 207
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 2 cut(s) 356, 485
Bst4CI ACNGT 4 cut(s) 232, 618, 693, 727
Bst6I CTCTTC 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 670
BstAUI TGTACA 1 cut(s) 331
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 189, 687
BstDEI CTNAG 1 cut(s) 582
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 3 cut(s) 189, 397, 495
BstFNI CGCG 1 cut(s) 105
BstKTI GATC 3 cut(s) 93, 109, 210
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 3 cut(s) 90, 106, 207
BstMWI GCNNNNNNNGC 3 cut(s) 470, 670, 682
BstNI CCWGG 2 cut(s) 356, 485
BstNSI RCATGY 3 cut(s) 240, 431, 785
BstSCI CCNGG 2 cut(s) 354, 483
BstSFI CTRYAG 1 cut(s) 76
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 3 cut(s) 349, 482, 685
BsuRI GGCC 3 cut(s) 5, 134, 847
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 3 cut(s) 189, 397, 495
BtsIMutI CAGTG 2 cut(s) 117, 689
BtuMI TCGCGA 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 189, 687
CciI TCATGA 2 cut(s) 312, 598
Cfr10I RCCGGY 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 561
CseI GACGC 2 cut(s) 388, 819
Csp6I GTAC 4 cut(s) 17, 46, 332, 589
CviQI GTAC 4 cut(s) 17, 46, 332, 589
DdeI CTNAG 1 cut(s) 582
DpnI GATC 3 cut(s) 92, 108, 209
DpnII GATC 3 cut(s) 90, 106, 207
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 366
Eco24I GRGCYC 2 cut(s) 75, 823
Eco47I GGWCC 1 cut(s) 561
Eco53kI GAGCTC 1 cut(s) 73
EcoICRI GAGCTC 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 354, 483
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 2 cut(s) 75, 823
ErhI CCWWGG 1 cut(s) 366
FalI AAGNNNNNCTT 2 cut(s) 808, 840
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 3 cut(s) 363, 471, 674
FokI GGATG 3 cut(s) 196, 404, 502
FriOI GRGCYC 2 cut(s) 75, 823
Fsp4HI GCNGC 3 cut(s) 363, 471, 674
FspBI CTAG 2 cut(s) 218, 627
GluI GCNGC 3 cut(s) 363, 471, 674
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 3 cut(s) 5, 134, 847
HapII CCGG 1 cut(s) 527
HgaI GACGC 2 cut(s) 388, 819
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 2 cut(s) 116, 650
HpaII CCGG 1 cut(s) 527
HphI GGTGA 6 cut(s) 100, 489, 541, 622, 757, 802
Hpy166II GTNNAC 3 cut(s) 46, 334, 765
Hpy188I TCNGA 2 cut(s) 280, 459
Hpy188III TCNNGA 4 cut(s) 104, 205, 313, 599
Hpy8I GTNNAC 3 cut(s) 46, 334, 765
HpyAV CCTTC 6 cut(s) 30, 104, 118, 319, 510, 834
HpyCH4III ACNGT 4 cut(s) 232, 618, 693, 727
HpyCH4V TGCA 5 cut(s) 59, 645, 658, 664, 673
HpyF10VI GCNNNNNNNGC 3 cut(s) 470, 670, 682
HpyF3I CTNAG 1 cut(s) 582
KpnI GGTACC 2 cut(s) 20, 592
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 3 cut(s) 90, 106, 207
LmnI GCTCC 1 cut(s) 826
Lsp1109I GCAGC 3 cut(s) 349, 482, 685
LweI GCATC 3 cut(s) 174, 480, 651
MaeI CTAG 2 cut(s) 218, 627
MaeIII GTNAC 3 cut(s) 232, 413, 571
MalI GATC 3 cut(s) 92, 108, 209
MboI GATC 3 cut(s) 90, 106, 207
MboII GAAGA 3 cut(s) 190, 331, 546
MhlI GDGCHC 2 cut(s) 75, 823
MluCI AATT 2 cut(s) 324, 702
MlyI GAGTC 2 cut(s) 125, 659
MnlI CCTC 8 cut(s) 16, 34, 174, 207, 251, 535, 601, 858
MseI TTAA 1 cut(s) 410
MslI CAYNNNNRTG 1 cut(s) 86
MspI CCGG 1 cut(s) 527
MspR9I CCNGG 2 cut(s) 356, 485
Mva1269I GAATGC 1 cut(s) 81
MvaI CCWGG 2 cut(s) 356, 485
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 470, 670, 682
NcoI CCATGG 1 cut(s) 366
NdeII GATC 3 cut(s) 90, 106, 207
NlaIV GGNNCC 6 cut(s) 18, 259, 546, 590, 822, 831
NmuCI GTSAC 3 cut(s) 232, 413, 571
NruI TCGCGA 1 cut(s) 105
NspI RCATGY 3 cut(s) 240, 431, 785
NspV TTCGAA 1 cut(s) 166
PagI TCATGA 2 cut(s) 312, 598
PctI GAATGC 1 cut(s) 81
PflMI CCANNNNNTGG 1 cut(s) 843
PkrI GCNGC 3 cut(s) 364, 472, 675
PleI GAGTC 2 cut(s) 124, 658
PpsI GAGTC 2 cut(s) 124, 658
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 2 cut(s) 354, 483
PspGI CCWGG 2 cut(s) 354, 483
PspN4I GGNNCC 6 cut(s) 18, 259, 546, 590, 822, 831
PspPI GGNCC 1 cut(s) 561
RruI TCGCGA 1 cut(s) 105
RsaI GTAC 4 cut(s) 18, 47, 333, 590
RsaNI GTAC 4 cut(s) 17, 46, 332, 589
RseI CAYNNNNRTG 1 cut(s) 86
SacI GAGCTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 3 cut(s) 363, 471, 674
Sau3AI GATC 3 cut(s) 90, 106, 207
Sau96I GGNCC 1 cut(s) 561
SchI GAGTC 2 cut(s) 125, 659
ScrFI CCNGG 2 cut(s) 356, 485
SduI GDGCHC 2 cut(s) 75, 823
SfaNI GCATC 3 cut(s) 174, 480, 651
SfcI CTRYAG 1 cut(s) 76
SfuI TTCGAA 1 cut(s) 166
SgrAI CRCCGGYG 1 cut(s) 526
SinI GGWCC 1 cut(s) 561
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 2 cut(s) 324, 702
SsiI CCGC 2 cut(s) 352, 524
SspI AATATT 1 cut(s) 508
SspMI CTAG 2 cut(s) 218, 627
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 354, 483
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 4 cut(s) 232, 618, 693, 727
TaqI TCGA 1 cut(s) 166
TasI AATT 2 cut(s) 324, 702
TatI WGTACW 1 cut(s) 331
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 2 cut(s) 117, 696
TseFI GTSAC 3 cut(s) 232, 413, 571
TseI GCWGC 3 cut(s) 362, 470, 673
Tsp45I GTSAC 3 cut(s) 232, 413, 571
TspDTI ATGAA 7 cut(s) 44, 47, 137, 228, 301, 360, 587
TspRI CASTG 2 cut(s) 117, 696
Van91I CCANNNNNTGG 1 cut(s) 843
VpaK11BI GGWCC 1 cut(s) 561
XapI RAATTY 1 cut(s) 324
XceI RCATGY 3 cut(s) 240, 431, 785
XcmI CCANNNNNNNNNTGG 1 cut(s) 840
XspI CTAG 2 cut(s) 218, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.