FvH4_3g26240

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
19185439 .. 19186883
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26240.t1

Sequence Viewer

Length: 1245 bp
ATGGCTTTCTTTTCCTCTTCCTCGTCCTCATGCGAAGTCCAAATCACCAAAGAACAGTTCTATTCATTCCATAACATTGACCGCAAGCTTTTCACACGTCTCACATTGCATCTGGGCCGTGACCCGGGCGAGTCAGCCCAGGTTATGGCCTTCTGGATGTGGCTTGAGCACAGTGGTAAAGTCACCCGCTTCATCCAAAAAGCCCTCGACACTCTCCCCAACACCCTCCTCCATATCATGGCCGACGAGTCTTGCATGGTCCTTAATGTCATTCAACACGAGGAGTTTCCGACGGTCTTGGAATCCGATATCATGCCTCACGATATTCCCATCCTCCAAGGAATGACCAAGAGCGGCGTCACCCTCAAATTCTTCCATAAGAACCGCCTCAGCATCATCCGAGGAATTACCATATTTCTCAACGACGTGTGCTTAAGAGCGTTTGATGACTTGTATATCACAGCAGCTAACTACCAAAACAAGACTATCGATCCCAGAATCACAGGAATAGGGTTACAGCCAGAGACGCAGAATTATGCCAGGAGGGTGGTTCAAGTCAACAAGTACTATAATCCATTTCTCGTTGGAGCTGCGACTTTTGACGCTCCTATAGAAACCATAGGACCTCTTCCTCCACCCTCCATAGATGAGACTGTTGTTAACAGTAATAGTAGTGTTGATCCACATCCACTAACATTGGAGCCCTGCGTGGCGGTTATGGCGTCGTCTGTTGGAGCAGCTCAATCTCCTCCAGAGTATTTGCGTCTTGGTTTTGCTAATGCATATGATATTGGGGCTCAACATGATATTCTGAATAACGAAATGGCAAATATGTTGAGTTGTTTGCATCTGCATGACGATGTTAGAGGTAAGGGTGATACAAGTGATGTTGTTCGGGGGGATCAGGTCCAGGAAGAAGTTCCTGCGGATGATAGGACTATTTTCTTGACATTTTCTAAGGGGTATCCCATTTCTGAAAAGGAAGTGAGAGAGTTCTTCACTAGGAAATATGGGGACATTTTTGATGCTATCCATATGCAAGAAGTACCTGTAGAAGATCAACAGCCTTTATATGCTCGCCTTGTAGTTCGTTATGCTTTCTTCATTCCGATGGTACTTGAGGGACAAACAAAGGCCAAATTTGCCATTAATGGAAAACATGTTTGGGCTAGAAAGTACGTGAAGAAAAATGCCACAGGAGAACAAACTTCACCAAAGGGTGCTACTACAAATACTCGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

415

Amino Acids

46.58

Weight (kDa)

5.92

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000612)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 145, 238
AccBSI CCGCTC 1 cut(s) 354
AciI CCGC 6 cut(s) 82, 187, 354, 385, 713, 926
AclWI GGATC 3 cut(s) 485, 674, 909
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 2 cut(s) 368, 1139
AcyI GRCGYC 2 cut(s) 357, 722
AfaI GTAC 4 cut(s) 566, 1047, 1116, 1178
AfiI CCNNNNNNNGG 3 cut(s) 124, 145, 238
AflII CTTAAG 1 cut(s) 433
AflIII ACRYGT 3 cut(s) 95, 426, 1159
AgsI TTSAA 2 cut(s) 275, 554
AjiI CACGTC 2 cut(s) 98, 427
AjnI CCWGG 3 cut(s) 138, 539, 909
AjuI GAANNNNNNNTTGG 4 cut(s) 41, 73, 1147, 1179
AluBI AGCT 4 cut(s) 88, 467, 590, 740
AluI AGCT 4 cut(s) 88, 467, 590, 740
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 3 cut(s) 104, 518, 644
AlwI GGATC 3 cut(s) 485, 674, 909
Ama87I CYCGRG 1 cut(s) 124
AoxI GGCC 4 cut(s) 115, 147, 240, 1134
ApeKI GCWGC 3 cut(s) 464, 590, 737
ApoI RAATTY 2 cut(s) 368, 1139
AseI ATTAAT 1 cut(s) 1149
Asp700I GAANNNNTTC 1 cut(s) 918
AspS9I GGNCC 4 cut(s) 115, 259, 623, 907
AsuC2I CCSGG 2 cut(s) 125, 126
AsuHPI GGTGA 5 cut(s) 37, 175, 352, 887, 1203
AvaI CYCGRG 1 cut(s) 124
AvaII GGWCC 3 cut(s) 259, 623, 907
BanII GRGCYC 2 cut(s) 705, 799
BauI CACGAG 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 171
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 3 cut(s) 476, 577, 749
BccI CCATC 2 cut(s) 338, 1105
BceAI ACGGC 1 cut(s) 102
BciT130I CCWGG 3 cut(s) 140, 541, 911
BciVI GTATCC 1 cut(s) 975
BcnI CCSGG 2 cut(s) 125, 126
BcoDI GTCTC 3 cut(s) 104, 518, 644
BfaI CTAG 2 cut(s) 1002, 1170
BfmI CTRYAG 2 cut(s) 609, 1050
BfrI CTTAAG 1 cut(s) 433
BfuI GTATCC 1 cut(s) 975
BisI GCNGC 4 cut(s) 355, 465, 591, 738
BlsI GCNGC 4 cut(s) 356, 466, 592, 739
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 5 cut(s) 125, 126, 140, 541, 911
Bme18I GGWCC 3 cut(s) 259, 623, 907
BmeT110I CYCGRG 1 cut(s) 124
BmgBI CACGTC 2 cut(s) 98, 427
BmgT120I GGNCC 4 cut(s) 115, 259, 623, 907
BmiI GGNNCC 1 cut(s) 702
BmrFI CCNGG 5 cut(s) 125, 126, 140, 541, 911
BmsI GCATC 4 cut(s) 118, 402, 856, 1015
BpmI CTGGAG 1 cut(s) 735
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 2 cut(s) 185, 1139
BpuMI CCSGG 2 cut(s) 125, 126
Bsa29I ATCGAT 1 cut(s) 489
BsaAI YACGTR 1 cut(s) 1180
BsaBI GATNNNNATC 1 cut(s) 684
BsaHI GRCGYC 2 cut(s) 357, 722
BsaJI CCNNGG 4 cut(s) 124, 138, 337, 400
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 145, 238
Bse3DI GCAATG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 684
BseBI CCWGG 3 cut(s) 140, 541, 911
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 4 cut(s) 124, 138, 337, 400
BseGI GGATG 6 cut(s) 162, 192, 330, 396, 685, 934
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 3 cut(s) 124, 145, 238
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 403
BseRI GAGGAG 3 cut(s) 218, 296, 738
BseXI GCAGC 3 cut(s) 476, 577, 749
BshFI GGCC 4 cut(s) 117, 149, 242, 1136
BshVI ATCGAT 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 1 cut(s) 125
BslFI GGGAC 2 cut(s) 1028, 1137
BslI CCNNNNNNNGG 3 cut(s) 124, 145, 238
BsmAI GTCTC 3 cut(s) 104, 518, 644
BsmBI CGTCTC 2 cut(s) 104, 518
BsmFI GGGAC 2 cut(s) 1028, 1137
BsnI GGCC 4 cut(s) 117, 149, 242, 1136
BsoBI CYCGRG 1 cut(s) 124
Bsp1286I GDGCHC 3 cut(s) 171, 705, 799
Bsp143I GATC 5 cut(s) 490, 679, 901, 1057, 1238
BspACI CCGC 6 cut(s) 82, 187, 354, 385, 713, 926
BspANI GGCC 4 cut(s) 117, 149, 242, 1136
BspCNI CTCAG 1 cut(s) 402
BspDI ATCGAT 1 cut(s) 489
BspLI GGNNCC 1 cut(s) 702
BspPI GGATC 3 cut(s) 485, 674, 909
BspTI CTTAAG 1 cut(s) 433
BsrBI CCGCTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 104
BssECI CCNNGG 4 cut(s) 124, 138, 337, 400
BssMI GATC 5 cut(s) 490, 679, 901, 1057, 1238
BssNI GRCGYC 2 cut(s) 357, 722
BssSI CACGAG 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 337
Bst2BI CACGAG 1 cut(s) 278
Bst2UI CCWGG 3 cut(s) 140, 541, 911
Bst4CI ACNGT 5 cut(s) 57, 173, 295, 655, 665
Bst6I CTCTTC 2 cut(s) 22, 633
BstACI GRCGYC 2 cut(s) 357, 722
BstAFI CTTAAG 1 cut(s) 433
BstBAI YACGTR 1 cut(s) 1180
BstC8I GCNNGC 2 cut(s) 86, 1078
BstDEI CTNAG 2 cut(s) 389, 957
BstF5I GGATG 6 cut(s) 162, 192, 330, 396, 685, 934
BstKTI GATC 5 cut(s) 493, 682, 904, 1060, 1241
BstMAI GTCTC 3 cut(s) 104, 518, 644
BstMBI GATC 5 cut(s) 490, 679, 901, 1057, 1238
BstMWI GCNNNNNNNGC 3 cut(s) 526, 719, 1142
BstNI CCWGG 3 cut(s) 140, 541, 911
BstNSI RCATGY 1 cut(s) 1163
BstSCI CCNGG 5 cut(s) 123, 124, 138, 539, 909
BstSFI CTRYAG 2 cut(s) 609, 1050
BstV1I GCAGC 3 cut(s) 476, 577, 749
BstXI CCANNNNNNTGG 1 cut(s) 547
Bsu15I ATCGAT 1 cut(s) 489
BsuI GTATCC 1 cut(s) 975
BsuRI GGCC 4 cut(s) 117, 149, 242, 1136
BsuTUI ATCGAT 1 cut(s) 489
BtrI CACGTC 2 cut(s) 98, 427
BtsCI GGATG 6 cut(s) 162, 192, 330, 396, 685, 934
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 2 cut(s) 86, 1078
Cfr13I GGNCC 4 cut(s) 115, 259, 623, 907
Cfr9I CCCGGG 1 cut(s) 124
ClaI ATCGAT 1 cut(s) 489
CseI GACGC 5 cut(s) 346, 535, 611, 711, 752
Csp6I GTAC 4 cut(s) 565, 1046, 1115, 1177
CspCI CAANNNNNGTGG 2 cut(s) 678, 713
CviAII CATG 7 cut(s) 30, 238, 256, 313, 803, 854, 1160
CviQI GTAC 4 cut(s) 565, 1046, 1115, 1177
DdeI CTNAG 2 cut(s) 389, 957
DpnI GATC 5 cut(s) 492, 681, 903, 1059, 1240
DpnII GATC 5 cut(s) 490, 679, 901, 1057, 1238
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 2 cut(s) 22, 633
EarI CTCTTC 2 cut(s) 22, 633
Eco130I CCWWGG 1 cut(s) 337
Eco24I GRGCYC 2 cut(s) 705, 799
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 3 cut(s) 259, 623, 907
Eco88I CYCGRG 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 623
EcoRII CCWGG 3 cut(s) 138, 539, 909
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 337
EcoT22I ATGCAT 1 cut(s) 784
EcoT38I GRGCYC 2 cut(s) 705, 799
ErhI CCWWGG 1 cut(s) 337
Esp3I CGTCTC 2 cut(s) 104, 518
FaeI CATG 7 cut(s) 33, 241, 259, 316, 806, 857, 1163
FaqI GGGAC 2 cut(s) 1028, 1137
FatI CATG 7 cut(s) 29, 237, 255, 312, 802, 853, 1159
FauI CCCGC 1 cut(s) 194
FauNDI CATATG 2 cut(s) 784, 1035
Fnu4HI GCNGC 4 cut(s) 355, 465, 591, 738
FokI GGATG 6 cut(s) 169, 179, 317, 383, 672, 941
FriOI GRGCYC 2 cut(s) 705, 799
Fsp4HI GCNGC 4 cut(s) 355, 465, 591, 738
FspBI CTAG 2 cut(s) 1002, 1170
GluI GCNGC 4 cut(s) 355, 465, 591, 738
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 4 cut(s) 117, 149, 242, 1136
HapII CCGG 1 cut(s) 125
HgaI GACGC 5 cut(s) 346, 535, 611, 711, 752
Hin1I GRCGYC 2 cut(s) 357, 722
Hin1II CATG 7 cut(s) 33, 241, 259, 316, 806, 857, 1163
HincII GTYRAC 2 cut(s) 559, 661
HindII GTYRAC 2 cut(s) 559, 661
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 4 cut(s) 131, 248, 302, 498
HpaI GTTAAC 1 cut(s) 661
HpaII CCGG 1 cut(s) 125
HphI GGTGA 5 cut(s) 37, 175, 352, 887, 1203
Hpy166II GTNNAC 2 cut(s) 559, 661
Hpy188I TCNGA 6 cut(s) 291, 307, 401, 813, 976, 1110
Hpy188III TCNNGA 4 cut(s) 154, 320, 752, 946
Hpy8I GTNNAC 2 cut(s) 559, 661
Hpy99I CGWCG 4 cut(s) 248, 295, 428, 727
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 5 cut(s) 57, 173, 295, 655, 665
HpyCH4IV ACGT 3 cut(s) 97, 426, 1179
HpyCH4V TGCA 6 cut(s) 109, 255, 782, 847, 853, 1039
HpyF10VI GCNNNNNNNGC 3 cut(s) 526, 719, 1142
HpyF3I CTNAG 2 cut(s) 389, 957
HpySE526I ACGT 3 cut(s) 97, 426, 1179
Hsp92I GRCGYC 2 cut(s) 357, 722
Hsp92II CATG 7 cut(s) 33, 241, 259, 316, 806, 857, 1163
KspAI GTTAAC 1 cut(s) 661
Kzo9I GATC 5 cut(s) 490, 679, 901, 1057, 1238
LmnI GCTCC 4 cut(s) 587, 610, 700, 734
Lsp1109I GCAGC 3 cut(s) 476, 577, 749
LweI GCATC 4 cut(s) 118, 402, 856, 1015
MaeI CTAG 2 cut(s) 1002, 1170
MaeII ACGT 3 cut(s) 97, 426, 1179
MaeIII GTNAC 4 cut(s) 119, 181, 358, 513
MalI GATC 5 cut(s) 492, 681, 903, 1059, 1240
MbiI CCGCTC 1 cut(s) 354
MboI GATC 5 cut(s) 490, 679, 901, 1057, 1238
MboII GAAGA 8 cut(s) 9, 364, 620, 926, 988, 1067, 1093, 1195
MhlI GDGCHC 3 cut(s) 171, 705, 799
MluCI AATT 4 cut(s) 368, 405, 532, 1139
MlyI GAGTC 2 cut(s) 140, 257
MmeI TCCRAC 3 cut(s) 314, 565, 712
Mph1103I ATGCAT 1 cut(s) 784
MroXI GAANNNNTTC 1 cut(s) 918
MseI TTAA 5 cut(s) 264, 434, 660, 1149, 1243
MslI CAYNNNNRTG 3 cut(s) 852, 858, 1109
MspCI CTTAAG 1 cut(s) 433
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 5 cut(s) 125, 126, 140, 541, 911
MvaI CCWGG 3 cut(s) 140, 541, 911
MwoI GCNNNNNNNGC 3 cut(s) 526, 719, 1142
NciI CCSGG 2 cut(s) 125, 126
NdeI CATATG 2 cut(s) 784, 1035
NdeII GATC 5 cut(s) 490, 679, 901, 1057, 1238
NlaIII CATG 7 cut(s) 33, 241, 259, 316, 806, 857, 1163
NlaIV GGNNCC 1 cut(s) 702
NmuCI GTSAC 3 cut(s) 119, 181, 358
NsiI ATGCAT 1 cut(s) 784
NspI RCATGY 1 cut(s) 1163
PciI ACATGT 1 cut(s) 1159
PdmI GAANNNNTTC 1 cut(s) 918
PfeI GAWTC 2 cut(s) 302, 498
PflMI CCANNNNNTGG 2 cut(s) 145, 238
PfoI TCCNGGA 1 cut(s) 909
PkrI GCNGC 4 cut(s) 356, 466, 592, 739
PleI GAGTC 2 cut(s) 139, 256
PpsI GAGTC 2 cut(s) 139, 256
Ppu21I YACGTR 1 cut(s) 1180
PpuMI RGGWCCY 1 cut(s) 623
PscI ACATGT 1 cut(s) 1159
PshBI ATTAAT 1 cut(s) 1149
Psp5II RGGWCCY 1 cut(s) 623
Psp6I CCWGG 3 cut(s) 138, 539, 909
PspGI CCWGG 3 cut(s) 138, 539, 909
PspN4I GGNNCC 1 cut(s) 702
PspPI GGNCC 4 cut(s) 115, 259, 623, 907
PspPPI RGGWCCY 1 cut(s) 623
RsaI GTAC 4 cut(s) 566, 1047, 1116, 1178
RsaNI GTAC 4 cut(s) 565, 1046, 1115, 1177
RseI CAYNNNNRTG 3 cut(s) 852, 858, 1109
SaqAI TTAA 5 cut(s) 264, 434, 660, 1149, 1243
SatI GCNGC 4 cut(s) 355, 465, 591, 738
Sau3AI GATC 5 cut(s) 490, 679, 901, 1057, 1238
Sau96I GGNCC 4 cut(s) 115, 259, 623, 907
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 2 cut(s) 140, 257
ScrFI CCNGG 5 cut(s) 125, 126, 140, 541, 911
SduI GDGCHC 3 cut(s) 171, 705, 799
SfaNI GCATC 4 cut(s) 118, 402, 856, 1015
SfcI CTRYAG 2 cut(s) 609, 1050
SinI GGWCC 3 cut(s) 259, 623, 907
SmaI CCCGGG 1 cut(s) 126
SmiMI CAYNNNNRTG 3 cut(s) 852, 858, 1109
SmlI CTYRAG 3 cut(s) 164, 433, 1118
SmoI CTYRAG 3 cut(s) 164, 433, 1118
Sse9I AATT 4 cut(s) 368, 405, 532, 1139
SsiI CCGC 6 cut(s) 82, 187, 354, 385, 713, 926
SspMI CTAG 2 cut(s) 1002, 1170
StyD4I CCNGG 5 cut(s) 123, 124, 138, 539, 909
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 5 cut(s) 57, 173, 295, 655, 665
TaiI ACGT 3 cut(s) 100, 429, 1182
TaqI TCGA 3 cut(s) 207, 489, 1237
TasI AATT 4 cut(s) 368, 405, 532, 1139
TatI WGTACW 1 cut(s) 564
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 2 cut(s) 302, 498
Tru1I TTAA 5 cut(s) 264, 434, 660, 1149, 1243
Tru9I TTAA 5 cut(s) 264, 434, 660, 1149, 1243
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 3 cut(s) 119, 181, 358
TseI GCWGC 3 cut(s) 464, 590, 737
Tsp45I GTSAC 3 cut(s) 119, 181, 358
TspDTI ATGAA 3 cut(s) 54, 181, 1093
TspMI CCCGGG 1 cut(s) 124
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 2 cut(s) 145, 238
Vha464I CTTAAG 1 cut(s) 433
VpaK11BI GGWCC 3 cut(s) 259, 623, 907
VspI ATTAAT 1 cut(s) 1149
XapI RAATTY 2 cut(s) 368, 1139
XceI RCATGY 1 cut(s) 1163
XmaI CCCGGG 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 918
XspI CTAG 2 cut(s) 1002, 1170
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.