Rroxscaffold_2G00146780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000612
Physical Location & Seq
Forward (+)
84665803 .. 84670257
4455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146780.1

Sequence Viewer

Length: 951 bp
ATGGACAGAGAGCTCTACAGCATTCTGGTGATCCTTCTCTGTCGCGATCCAGTGGAGTCTATGAAGGTTATGGCCTTGTGGCTCTGGCTGGAGAAGTTGGGGTATCGAAATGTTGTGAAGAGGATGCTGGCTTTACCTCTCATCTTGATCAATGAACTAGCAGATGAGACAGTCACTTGCCTCAATGCCATCAATGGAACCCTTTTCTCCTACTTATCCGAAAGCTATGACATTCCACTCCTACAAGCCTTCATGACCAGAGAAATTTCTGTACACTTCTTCTATGAACACCGCCTGGTTGCTGCCATGGGTATCGCCGAAGTTGGCAGGGATGTGTGCGTCAAAGCTTTCAGTGACATTATGGCACATGCCATTGAAAGAAATAACCTTGCTTATCAGAACGCAACAGCAGCAAATCAAAGCCAGGGGATGCTATCACCTTCCAATATTCGCCAACAGCCACCGCCGGTGAGAAGAAACGAGGTGCCACCACAGGATAGGACCATGTTTGTCACATTCTCTAAGGGGTACCCAGTTCATGAGTTTGAGGTGACACAGTTCTTTACTAGACTTTATGGAGATTGCATTGAGTCTTTGCAGATGCAGGAAGTGCAGCCTTTTGAGCAAGCCCTGTATGCGAGAATTGTGTGTTATTCTGCTAATACTGTTGAAGCCATACTCAATGGTATGAGCAAGGCAAAGTTCACCATCAATGGGAAGCATGTATGGGTGAGAAAATATGTGGCAAGACGCACAAGGGCTCCTTCGCTAAAGCACTTTTGCCTTCAACTTACCAAACACCTAGAAATTGCTTTTCGCTCTCACAACACTTTTAAAAACGGTTACCAAACACCTCACCGCTTACTCTCACAACAAGTTCGAAGTGATTCCTCTCACAGCAAGTTCGAAGTGTTTCCTCTCACAGCACAACAATCCCAAACTAAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

36.36

Weight (kDa)

9.07

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 2 cut(s) 484, 528
AccII CGCG 1 cut(s) 45
AciI CCGC 3 cut(s) 292, 464, 859
AclWI GGATC 2 cut(s) 25, 41
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 2 cut(s) 273, 530
AfiI CCNNNNNNNGG 1 cut(s) 714
AgsI TTSAA 3 cut(s) 377, 671, 788
AjnI CCWGG 2 cut(s) 294, 423
AluBI AGCT 3 cut(s) 13, 225, 347
AluI AGCT 3 cut(s) 13, 225, 347
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 2 cut(s) 25, 41
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 3 cut(s) 302, 410, 613
ApoI RAATTY 1 cut(s) 264
Asp700I GAANNNNTTC 2 cut(s) 886, 912
Asp718I GGTACC 1 cut(s) 528
AspS9I GGNCC 1 cut(s) 501
AsuHPI GGTGA 7 cut(s) 40, 429, 481, 562, 697, 742, 848
AsuII TTCGAA 2 cut(s) 880, 906
AvaII GGWCC 1 cut(s) 501
BanI GGYRCC 2 cut(s) 484, 528
BanII GRGCYC 2 cut(s) 15, 763
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 3 cut(s) 289, 422, 625
BccI CCATC 2 cut(s) 197, 716
BciT130I CCWGG 2 cut(s) 296, 425
BclI TGATCA 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 3 cut(s) 158, 567, 803
BfmI CTRYAG 1 cut(s) 16
BisI GCNGC 3 cut(s) 303, 411, 614
BlsI GCNGC 3 cut(s) 304, 412, 615
Bme1390I CCNGG 2 cut(s) 296, 425
Bme18I GGWCC 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 501
BmiI GGNNCC 4 cut(s) 199, 486, 530, 762
BmrFI CCNGG 2 cut(s) 296, 425
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 3 cut(s) 114, 420, 591
BmuI ACTGGG 1 cut(s) 527
BpmI CTGGAG 1 cut(s) 110
Bpu14I TTCGAA 2 cut(s) 880, 906
BsaJI CCNNGG 2 cut(s) 306, 424
BsaXI ACNNNNNCTCC 2 cut(s) 745, 775
Bsc4I CCNNNNNNNGG 1 cut(s) 714
Bse118I RCCGGY 1 cut(s) 466
Bse1I ACTGG 2 cut(s) 50, 533
BseBI CCWGG 2 cut(s) 296, 425
BseDI CCNNGG 2 cut(s) 306, 424
BseGI GGATG 3 cut(s) 129, 337, 435
BseLI CCNNNNNNNGG 1 cut(s) 714
BseNI ACTGG 2 cut(s) 50, 533
BseXI GCAGC 3 cut(s) 289, 422, 625
BsgI GTGCAG 1 cut(s) 632
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 2 cut(s) 484, 528
BsiHKAI GWGCWC 1 cut(s) 15
BsiSI CCGG 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 714
BsmAI GTCTC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 21
BsnI GGCC 1 cut(s) 74
Bsp119I TTCGAA 2 cut(s) 880, 906
Bsp1286I GDGCHC 2 cut(s) 15, 763
Bsp1407I TGTACA 1 cut(s) 271
Bsp143I GATC 3 cut(s) 30, 46, 147
Bsp19I CCATGG 1 cut(s) 306
Bsp68I TCGCGA 1 cut(s) 45
BspACI CCGC 3 cut(s) 292, 464, 859
BspANI GGCC 1 cut(s) 74
BspFNI CGCG 1 cut(s) 45
BspHI TCATGA 2 cut(s) 252, 538
BspLI GGNNCC 4 cut(s) 199, 486, 530, 762
BspPI GGATC 2 cut(s) 25, 41
BspT104I TTCGAA 2 cut(s) 880, 906
BspT107I GGYRCC 2 cut(s) 484, 528
BsrFI RCCGGY 1 cut(s) 466
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 2 cut(s) 50, 533
BssAI RCCGGY 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 306, 424
BssMI GATC 3 cut(s) 30, 46, 147
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 296, 425
Bst4CI ACNGT 4 cut(s) 172, 558, 667, 842
Bst6I CTCTTC 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 610
BstAUI TGTACA 1 cut(s) 271
BstBI TTCGAA 2 cut(s) 880, 906
BstC8I GCNNGC 2 cut(s) 129, 627
BstDEI CTNAG 2 cut(s) 522, 942
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 842
BstF5I GGATG 3 cut(s) 129, 337, 435
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 3 cut(s) 33, 49, 150
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 3 cut(s) 30, 46, 147
BstMWI GCNNNNNNNGC 4 cut(s) 410, 610, 622, 635
BstNI CCWGG 2 cut(s) 296, 425
BstNSI RCATGY 2 cut(s) 371, 725
BstPI GGTNACC 1 cut(s) 842
BstSCI CCNGG 2 cut(s) 294, 423
BstSFI CTRYAG 1 cut(s) 16
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 289, 422, 625
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 129, 337, 435
BtsIMutI CAGTG 2 cut(s) 57, 358
BtuMI TCGCGA 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 129, 627
CciI TCATGA 2 cut(s) 252, 538
Cfr10I RCCGGY 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 501
CseI GACGC 2 cut(s) 328, 759
Csp6I GTAC 2 cut(s) 272, 529
CviAII CATG 6 cut(s) 253, 307, 368, 505, 539, 722
CviQI GTAC 2 cut(s) 272, 529
DdeI CTNAG 2 cut(s) 522, 942
DpnI GATC 3 cut(s) 32, 48, 149
DpnII GATC 3 cut(s) 30, 46, 147
DraI TTTAAA 1 cut(s) 835
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 15, 763
Eco47I GGWCC 1 cut(s) 501
Eco53kI GAGCTC 1 cut(s) 13
Eco91I GGTNACC 1 cut(s) 842
EcoICRI GAGCTC 1 cut(s) 13
EcoO65I GGTNACC 1 cut(s) 842
EcoRII CCWGG 2 cut(s) 294, 423
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 15, 763
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 6 cut(s) 256, 310, 371, 508, 542, 725
FalI AAGNNNNNCTT 2 cut(s) 748, 780
FatI CATG 6 cut(s) 252, 306, 367, 504, 538, 721
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 303, 411, 614
FokI GGATG 3 cut(s) 136, 344, 442
FriOI GRGCYC 2 cut(s) 15, 763
Fsp4HI GCNGC 3 cut(s) 303, 411, 614
FspBI CTAG 3 cut(s) 158, 567, 803
GluI GCNGC 3 cut(s) 303, 411, 614
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 467
HgaI GACGC 2 cut(s) 328, 759
Hin1II CATG 6 cut(s) 256, 310, 371, 508, 542, 725
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 3 cut(s) 56, 590, 887
HpaII CCGG 1 cut(s) 467
HphI GGTGA 7 cut(s) 40, 429, 481, 562, 697, 742, 848
Hpy166II GTNNAC 2 cut(s) 274, 705
Hpy188I TCNGA 2 cut(s) 220, 399
Hpy188III TCNNGA 4 cut(s) 44, 145, 253, 539
Hpy8I GTNNAC 2 cut(s) 274, 705
HpyAV CCTTC 6 cut(s) 44, 58, 259, 450, 774, 794
HpyCH4III ACNGT 4 cut(s) 172, 558, 667, 842
HpyCH4V TGCA 4 cut(s) 585, 598, 604, 613
HpyF10VI GCNNNNNNNGC 4 cut(s) 410, 610, 622, 635
HpyF3I CTNAG 2 cut(s) 522, 942
Hsp92II CATG 6 cut(s) 256, 310, 371, 508, 542, 725
KpnI GGTACC 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 3 cut(s) 30, 46, 147
LmnI GCTCC 1 cut(s) 766
Lsp1109I GCAGC 3 cut(s) 289, 422, 625
LweI GCATC 3 cut(s) 114, 420, 591
MaeI CTAG 3 cut(s) 158, 567, 803
MaeIII GTNAC 5 cut(s) 172, 353, 511, 550, 842
MalI GATC 3 cut(s) 32, 48, 149
MboI GATC 3 cut(s) 30, 46, 147
MboII GAAGA 3 cut(s) 130, 271, 486
MhlI GDGCHC 2 cut(s) 15, 763
MluCI AATT 3 cut(s) 264, 642, 807
MlyI GAGTC 2 cut(s) 65, 599
MnlI CCTC 8 cut(s) 114, 147, 191, 475, 541, 864, 901, 927
MroXI GAANNNNTTC 2 cut(s) 886, 912
MseI TTAA 2 cut(s) 834, 949
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 296, 425
Mva1269I GAATGC 1 cut(s) 21
MvaI CCWGG 2 cut(s) 296, 425
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 4 cut(s) 410, 610, 622, 635
NcoI CCATGG 1 cut(s) 306
NdeII GATC 3 cut(s) 30, 46, 147
NlaIII CATG 6 cut(s) 256, 310, 371, 508, 542, 725
NlaIV GGNNCC 4 cut(s) 199, 486, 530, 762
NmuCI GTSAC 4 cut(s) 172, 353, 511, 550
NruI TCGCGA 1 cut(s) 45
NspI RCATGY 2 cut(s) 371, 725
NspV TTCGAA 2 cut(s) 880, 906
PagI TCATGA 2 cut(s) 252, 538
PctI GAATGC 1 cut(s) 21
PdmI GAANNNNTTC 2 cut(s) 886, 912
PfeI GAWTC 1 cut(s) 887
PkrI GCNGC 3 cut(s) 304, 412, 615
PleI GAGTC 2 cut(s) 64, 598
PpsI GAGTC 2 cut(s) 64, 598
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 294, 423
PspEI GGTNACC 1 cut(s) 842
PspGI CCWGG 2 cut(s) 294, 423
PspN4I GGNNCC 4 cut(s) 199, 486, 530, 762
PspPI GGNCC 1 cut(s) 501
RruI TCGCGA 1 cut(s) 45
RsaI GTAC 2 cut(s) 273, 530
RsaNI GTAC 2 cut(s) 272, 529
RseI CAYNNNNRTG 1 cut(s) 26
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 834, 949
SatI GCNGC 3 cut(s) 303, 411, 614
Sau3AI GATC 3 cut(s) 30, 46, 147
Sau96I GGNCC 1 cut(s) 501
SchI GAGTC 2 cut(s) 65, 599
ScrFI CCNGG 2 cut(s) 296, 425
SduI GDGCHC 2 cut(s) 15, 763
SfaNI GCATC 3 cut(s) 114, 420, 591
SfcI CTRYAG 1 cut(s) 16
SfuI TTCGAA 2 cut(s) 880, 906
SgrAI CRCCGGYG 1 cut(s) 466
SinI GGWCC 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 3 cut(s) 264, 642, 807
SsiI CCGC 3 cut(s) 292, 464, 859
SspI AATATT 1 cut(s) 448
SspMI CTAG 3 cut(s) 158, 567, 803
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 294, 423
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 4 cut(s) 172, 558, 667, 842
TaqI TCGA 3 cut(s) 106, 880, 906
TasI AATT 3 cut(s) 264, 642, 807
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 1 cut(s) 887
Tru1I TTAA 2 cut(s) 834, 949
Tru9I TTAA 2 cut(s) 834, 949
TscAI CASTG 2 cut(s) 57, 358
TseFI GTSAC 4 cut(s) 172, 353, 511, 550
TseI GCWGC 3 cut(s) 302, 410, 613
Tsp45I GTSAC 4 cut(s) 172, 353, 511, 550
TspDTI ATGAA 5 cut(s) 77, 168, 241, 300, 527
TspRI CASTG 2 cut(s) 57, 358
VpaK11BI GGWCC 1 cut(s) 501
XapI RAATTY 1 cut(s) 264
XceI RCATGY 2 cut(s) 371, 725
XmnI GAANNNNTTC 2 cut(s) 886, 912
XspI CTAG 3 cut(s) 158, 567, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.