RLG00000027503

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000612
Physical Location & Seq
Reverse (-)
12240682 .. 12242468
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027503

Sequence Viewer

Length: 1077 bp
ATGGGTGGTTTTGAAAACCCTTATACCTCTTCTGTTCCTGCAACAATGGCAGCTTTGCAGAAACGACTCATTGCTAGAAGATCAAAACCCCTAAATGCTTCTGTCTCAATCCAAGAGTTCAATTCGTTTCACACCATTGACCGCAAGCTCTTCACTCGATTGGTGTTCAGTCTGGGCCGTGACCCGACCCAGTCGGCCCAAGTCATGGCTTTGTGGATGTGGCTGGAGCACAACGGCAACGAGTTTAACTTGGTGCACAAGGCACTGGTGACCCTACCCAATACCCTTCTCAATGATATGGCTGATGAGTCGGTTTCGGCCTTGAATTGCATTCAGAGCAATGTGTTTCCTTCCTCTGATTCAGGCATTACTCCTGACATTCCTATGCTGCAAGCCATGAGCAACAGTGGTGTCACCCTCAGATTCTTCCATGAAAATCGCGGCGAAATTGCGAGTGGAGTCATCACATTGCTCAAAGATGTTTGCTTGAGAGTGTTTGAGGACTTGTTGTTTCAACCCCTTCACCAGGAGAAAAAGGGTGGTGGTGAAGAAGATAGGACTAGTGTTGATGGTTTGTGCAATCCAGTAATGGGTGATATTGGTCAAGGCAATGTGCAGGGGGGTGATGATATTCCATTATATTGGCACCCACAAATGAATAGTGCTAATCTTTACTATTTGCTTGGAGGTTTTGATCCTCATAAGCTTGCAGTTCAGCGCCAGAGTTTGAATAAGGAAATGGAGGAGGTTTTGAGCTGTTTGAATTTGAATGATCATGAAGATCAAGAAGTCTTCCCTCAAGACAGGACTATTTTCCTAACATTTTCTAGAGGGTTTCCAATTGCAGAAAATAAGCTCAGAGAGTTCTTCACTAGGAGATTTGGGGAGATTATTGATGAAATCTGTATGCAAGAAGCTAAGGAACCTCTGTATGCCCGGCTTGTGCTACATTCTGCTTCCTCCATTCCGGTGGTTCTTGGTGGGAAAAGCATGGTCCAATTCTGCATTGATGGCAAGCATGTTCGGGCGAGGAAATTTGTGCTCAGGCATGCTCGCGCTGGGCAAAGGAGAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

40.27

Weight (kDa)

6.14

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 645
AccB7I CCANNNNNTGG 1 cut(s) 205
AccII CGCG 2 cut(s) 441, 1056
AciI CCGC 2 cut(s) 142, 441
AclWI GGATC 1 cut(s) 689
AcsI RAATTY 2 cut(s) 763, 1034
AfiI CCNNNNNNNGG 3 cut(s) 205, 526, 590
AgsI TTSAA 7 cut(s) 14, 121, 325, 515, 730, 763, 769
AhlI ACTAGT 1 cut(s) 560
AjnI CCWGG 1 cut(s) 525
AluBI AGCT 6 cut(s) 53, 148, 706, 756, 856, 917
AluI AGCT 6 cut(s) 53, 148, 706, 756, 856, 917
Alw21I GWGCWC 3 cut(s) 231, 258, 1044
Alw26I GTCTC 2 cut(s) 109, 1065
Alw44I GTGCAC 1 cut(s) 254
AlwI GGATC 1 cut(s) 689
AoxI GGCC 3 cut(s) 175, 195, 318
ApaLI GTGCAC 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 50, 388
ApoI RAATTY 2 cut(s) 763, 1034
AspLEI GCGC 2 cut(s) 720, 1058
AspS9I GGNCC 3 cut(s) 175, 196, 994
AsuC2I CCSGG 1 cut(s) 937
AsuHPI GGTGA 6 cut(s) 280, 406, 515, 557, 605, 635
AvaII GGWCC 1 cut(s) 994
BaeGI GKGCMC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 645
BbsI GAAGAC 1 cut(s) 784
Bbv12I GWGCWC 3 cut(s) 231, 258, 1044
BbvI GCAGC 2 cut(s) 62, 375
BccI CCATC 2 cut(s) 563, 1004
BceAI ACGGC 2 cut(s) 162, 250
BciT130I CCWGG 1 cut(s) 527
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 1 cut(s) 937
BcoDI GTCTC 2 cut(s) 109, 1065
BcuI ACTAGT 1 cut(s) 560
BfaI CTAG 4 cut(s) 75, 561, 828, 873
BfoI RGCGCY 1 cut(s) 721
BisI GCNGC 3 cut(s) 51, 389, 442
BlsI GCNGC 3 cut(s) 52, 390, 443
Bme1390I CCNGG 2 cut(s) 527, 937
Bme18I GGWCC 1 cut(s) 994
BmgT120I GGNCC 3 cut(s) 175, 196, 994
BmiI GGNNCC 2 cut(s) 647, 924
BmrFI CCNGG 2 cut(s) 527, 937
BmrI ACTGGG 1 cut(s) 184
BmuI ACTGGG 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 784
BpmI CTGGAG 1 cut(s) 245
Bpu10I CCTNAGC 2 cut(s) 918, 1043
BpuEI CTTGAG 2 cut(s) 508, 783
BpuMI CCSGG 1 cut(s) 937
BsaWI WCCGGW 1 cut(s) 967
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 526, 590
Bse1I ACTGG 3 cut(s) 190, 270, 584
Bse3DI GCAATG 4 cut(s) 69, 346, 467, 616
BseBI CCWGG 1 cut(s) 527
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 3 cut(s) 205, 526, 590
BseMI GCAATG 4 cut(s) 69, 346, 467, 616
BseMII CTCAG 3 cut(s) 433, 871, 1057
BseNI ACTGG 3 cut(s) 190, 270, 584
BseRI GAGGAG 1 cut(s) 758
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 2 cut(s) 62, 375
BseYI CCCAGC 1 cut(s) 1058
BsgI GTGCAG 1 cut(s) 635
Bsh1236I CGCG 2 cut(s) 441, 1056
BshFI GGCC 3 cut(s) 177, 197, 320
BshNI GGYRCC 1 cut(s) 645
BsiHKAI GWGCWC 3 cut(s) 231, 258, 1044
BsiSI CCGG 2 cut(s) 937, 968
BslI CCNNNNNNNGG 3 cut(s) 205, 526, 590
BsmAI GTCTC 2 cut(s) 109, 1065
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 3 cut(s) 177, 197, 320
Bsp1286I GDGCHC 3 cut(s) 231, 258, 1044
Bsp143I GATC 4 cut(s) 80, 694, 772, 781
BspACI CCGC 2 cut(s) 142, 441
BspANI GGCC 3 cut(s) 177, 197, 320
BspCNI CTCAG 3 cut(s) 432, 870, 1056
BspFNI CGCG 2 cut(s) 441, 1056
BspHI TCATGA 1 cut(s) 775
BspLI GGNNCC 2 cut(s) 647, 924
BspPI GGATC 1 cut(s) 689
BspQI GCTCTTC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 645
BsrDI GCAATG 4 cut(s) 69, 346, 467, 616
BsrI ACTGG 3 cut(s) 190, 270, 584
BssMI GATC 4 cut(s) 80, 694, 772, 781
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 2 cut(s) 34, 155
BstC8I GCNNGC 6 cut(s) 146, 393, 708, 1016, 1050, 1054
BstDEI CTNAG 4 cut(s) 419, 857, 918, 1043
BstEII GGTNACC 1 cut(s) 268
BstENI CCTNNNNNAGG 1 cut(s) 524
BstF5I GGATG 1 cut(s) 222
BstFNI CGCG 2 cut(s) 441, 1056
BstH2I RGCGCY 1 cut(s) 721
BstHHI GCGC 2 cut(s) 720, 1058
BstKTI GATC 4 cut(s) 83, 697, 775, 784
BstMAI GTCTC 2 cut(s) 109, 1065
BstMBI GATC 4 cut(s) 80, 694, 772, 781
BstMWI GCNNNNNNNGC 3 cut(s) 47, 336, 1011
BstNI CCWGG 1 cut(s) 527
BstNSI RCATGY 2 cut(s) 1022, 1052
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 525, 935
BstSLI GKGCMC 1 cut(s) 258
BstUI CGCG 2 cut(s) 441, 1056
BstV1I GCAGC 2 cut(s) 62, 375
BstV2I GAAGAC 1 cut(s) 784
BstXI CCANNNNNNTGG 2 cut(s) 642, 970
BsuRI GGCC 3 cut(s) 177, 197, 320
BtsCI GGATG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 263, 412
Cac8I GCNNGC 6 cut(s) 146, 393, 708, 1016, 1050, 1054
CciI TCATGA 1 cut(s) 775
CfoI GCGC 2 cut(s) 720, 1058
Cfr13I GGNCC 3 cut(s) 175, 196, 994
CviAII CATG 7 cut(s) 205, 397, 431, 776, 991, 1019, 1049
DdeI CTNAG 4 cut(s) 419, 857, 918, 1043
DpnI GATC 4 cut(s) 82, 696, 774, 783
DpnII GATC 4 cut(s) 80, 694, 772, 781
Eam1104I CTCTTC 2 cut(s) 34, 155
EarI CTCTTC 2 cut(s) 34, 155
Eco47I GGWCC 1 cut(s) 994
Eco91I GGTNACC 1 cut(s) 268
EcoNI CCTNNNNNAGG 1 cut(s) 524
EcoO65I GGTNACC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 525
FaeI CATG 7 cut(s) 208, 400, 434, 779, 994, 1022, 1052
FatI CATG 7 cut(s) 204, 396, 430, 775, 990, 1018, 1048
FbaI TGATCA 1 cut(s) 772
Fnu4HI GCNGC 3 cut(s) 51, 389, 442
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 3 cut(s) 51, 389, 442
FspBI CTAG 4 cut(s) 75, 561, 828, 873
GlaI GCGC 2 cut(s) 719, 1057
GluI GCNGC 3 cut(s) 51, 389, 442
GsaI CCCAGC 1 cut(s) 1062
GsuI CTGGAG 1 cut(s) 245
HaeII RGCGCY 1 cut(s) 721
HaeIII GGCC 3 cut(s) 177, 197, 320
HapII CCGG 2 cut(s) 937, 968
HhaI GCGC 2 cut(s) 720, 1058
Hin1II CATG 7 cut(s) 208, 400, 434, 779, 994, 1022, 1052
Hin6I GCGC 2 cut(s) 718, 1056
HinP1I GCGC 2 cut(s) 718, 1056
HindIII AAGCTT 1 cut(s) 704
HinfI GANTC 5 cut(s) 66, 308, 359, 423, 459
HpaII CCGG 2 cut(s) 937, 968
HphI GGTGA 6 cut(s) 280, 406, 515, 557, 605, 635
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 4 cut(s) 336, 358, 422, 860
Hpy188III TCNNGA 5 cut(s) 374, 776, 785, 800, 828
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 3 cut(s) 296, 360, 530
HpyCH4III ACNGT 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 336, 1011
HpyF3I CTNAG 4 cut(s) 419, 857, 918, 1043
Hsp92II CATG 7 cut(s) 208, 400, 434, 779, 994, 1022, 1052
HspAI GCGC 2 cut(s) 718, 1056
Ksp22I TGATCA 1 cut(s) 772
Kzo9I GATC 4 cut(s) 80, 694, 772, 781
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 1 cut(s) 226
Lsp1109I GCAGC 2 cut(s) 62, 375
MaeI CTAG 4 cut(s) 75, 561, 828, 873
MaeIII GTNAC 3 cut(s) 179, 268, 412
MalI GATC 4 cut(s) 82, 696, 774, 783
MboI GATC 4 cut(s) 80, 694, 772, 781
MboII GAAGA 9 cut(s) 21, 90, 142, 418, 560, 563, 784, 791, 859
MfeI CAATTG 1 cut(s) 840
MhlI GDGCHC 3 cut(s) 231, 258, 1044
MluCI AATT 7 cut(s) 121, 325, 447, 763, 840, 998, 1034
MlyI GAGTC 3 cut(s) 60, 317, 468
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 2 cut(s) 383, 968
MspI CCGG 2 cut(s) 937, 968
MspR9I CCNGG 2 cut(s) 527, 937
MunI CAATTG 1 cut(s) 840
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 1 cut(s) 527
MvnI CGCG 2 cut(s) 441, 1056
MwoI GCNNNNNNNGC 3 cut(s) 47, 336, 1011
NciI CCSGG 1 cut(s) 937
NdeII GATC 4 cut(s) 80, 694, 772, 781
NlaIII CATG 7 cut(s) 208, 400, 434, 779, 994, 1022, 1052
NlaIV GGNNCC 2 cut(s) 647, 924
NmuCI GTSAC 3 cut(s) 179, 268, 412
NspI RCATGY 2 cut(s) 1022, 1052
PaeI GCATGC 1 cut(s) 1052
PagI TCATGA 1 cut(s) 775
PciSI GCTCTTC 1 cut(s) 155
PctI GAATGC 1 cut(s) 330
PfeI GAWTC 2 cut(s) 359, 423
PflFI GACNNNGTC 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 3 cut(s) 52, 390, 443
PleI GAGTC 3 cut(s) 60, 316, 467
PpsI GAGTC 3 cut(s) 60, 316, 467
Psp6I CCWGG 1 cut(s) 525
PspEI GGTNACC 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 1058
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 2 cut(s) 647, 924
PspPI GGNCC 3 cut(s) 175, 196, 994
PsyI GACNNNGTC 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 383, 968
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 3 cut(s) 51, 389, 442
Sau3AI GATC 4 cut(s) 80, 694, 772, 781
Sau96I GGNCC 3 cut(s) 175, 196, 994
SchI GAGTC 3 cut(s) 60, 317, 468
ScrFI CCNGG 2 cut(s) 527, 937
SduI GDGCHC 3 cut(s) 231, 258, 1044
SinI GGWCC 1 cut(s) 994
SmiMI CAYNNNNRTG 2 cut(s) 383, 968
SmlI CTYRAG 2 cut(s) 487, 798
SmoI CTYRAG 2 cut(s) 487, 798
SpeI ACTAGT 1 cut(s) 560
SphI GCATGC 1 cut(s) 1052
Sse9I AATT 7 cut(s) 121, 325, 447, 763, 840, 998, 1034
SsiI CCGC 2 cut(s) 142, 441
SspMI CTAG 4 cut(s) 75, 561, 828, 873
StyD4I CCNGG 2 cut(s) 525, 935
TaaI ACNGT 1 cut(s) 407
TaqI TCGA 1 cut(s) 157
TasI AATT 7 cut(s) 121, 325, 447, 763, 840, 998, 1034
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 2 cut(s) 359, 423
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 2 cut(s) 270, 412
TseFI GTSAC 3 cut(s) 179, 268, 412
TseI GCWGC 2 cut(s) 50, 388
Tsp45I GTSAC 3 cut(s) 179, 268, 412
TspDTI ATGAA 4 cut(s) 447, 671, 792, 912
TspRI CASTG 2 cut(s) 270, 412
Tth111I GACNNNGTC 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 205
VneI GTGCAC 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 994
XagI CCTNNNNNAGG 1 cut(s) 524
XapI RAATTY 2 cut(s) 763, 1034
XbaI TCTAGA 1 cut(s) 827
XceI RCATGY 2 cut(s) 1022, 1052
XspI CTAG 4 cut(s) 75, 561, 828, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.