Rroxscaffold_1G00033000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000612
Physical Location & Seq
Forward (+)
47424147 .. 47435836
11690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00033000.1

Sequence Viewer

Length: 1617 bp
ATGGCTTCCTCTTCCTCTTCTTTGTCCCCACTGAAAGTCCGAATCACCAAGGAACAGTTCTACTCTTTCCACAACATTGACCGCAAGCTCTTCACCCGTCTTACATTGCATCTAGGCCGTGACCCGGGCGAGTCTGCTCAGATTATGGCCTTCTGGATGTGGCTCGAGCACGGTGGTAAGGTCACCCACTTCATTCACAAAGCCCTTAACACTCTCCCCAACACCCTCCTCCACATCATGGCCGACGAGTCATGCATGGTCCTCAATGTCATTCAAAACGATGAATTTCCGATGGTCTTGGAATCAGATATCATTCCTCACGATATTCCCGTTCTCCAAGGAATGACCAAAAGCGGCGTCACCCTCAGATTCTTCCATAAAAACCGCCTCAGCATCATCCGAGGACTTACCTTGTTTTTCAATGACGTGTGCTTGAGAGCCTTTGAGGACTTGTACATTACAGCCGCTCACTGCCAAAACAAGACTATAGATCCTATATCCACCGGAATAGGGTTACACCCAGAGCCGCAAAATTATGTAAGGAGGATGGTTCTAGTCAATAAGTACTACAATCCATTTCTCATTGGAGCTGCGACTTTTGACGCGCCTATGGAAACCATAGAACCTCTTCCTCCGCACCCCATGGATGGGGCTGTTGTTAACAGTAATAGTGGTGTTGATCCACTAATATGGGACCCTCGTGTGGCGGCCAAGGCGGTGTCTGCTCAGTCCCCTTCGGAGAATTTGCACCATGGATTTGTTGATCCCTATGATCTTAGCGCTCAGCGCGATTTCTTGAATAATGAAATGGCGGATATGCTGAGTCGTTTGCATTTGCATGGCGATGATGGTGATGGTGACGGTGGTGATATAGGCGGTGGTGTTCAGGGGGATCAAGTCGAGGAAGAAGTGTCTGCAGATGATAGGACTATTTTCTTGACATTTTCTAAGGGGTATCCCATTTCTGAAAAGGAAGTGAGAGAGTTCTTTACCAGGAAATATGGGGAATTTTTTGATGCTATCCATATGCAAGAAGTACAAGTAGCGGATCAGCAGCCTTTATATGCCCGCCTTGTGGTTCGTGTCGCTTCTTTTATTCCAGTGGTGCTCGAGGGACAAAGCAAGGCCAAATTTTCTATCAACGGAAAACATGTTTGGGCAAGAAAGTACGTGAAAAAGAATAATGTGATAGGAGAACAAAGTTCACCAAAGGACTGGCGCGAGAGAGTAAAGCTAATCCGAGAGAGAGAGAGTCGAAAGCAGGAGAGAAGAGGTTCGTCTGGATCCGAGAGAGAGGAAGAGCAGGAGACGGGAAGAGTTTCTGTGCAAGCACAGAAAGAGGCTGCTTCAGACATGCAATGCAAGGACAAGTTTCTCCTTCAGCGTGTAAAAACCAATGATGGTGCAACTATAAAGAAAATTACTCTAGAAGTGGCTGCAAAAGGATTTTCGGAGCAGCTTGAAGCTCTGGAGAGATCTGCAGAGTCCAGAGAAAGAGGCGAGATGAAAGAAAGGGAGAAGAGAACCCGGGAAGAAGGAAGAGAAGGAGAAGAGACAGACCGGAAGCTCTTGACTAAAACAACACAAGTGGAAGCAAAGCGCGGGTATACTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

538

Amino Acids

60.99

Weight (kDa)

6.22

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 238
AccBSI CCGCTC 1 cut(s) 467
AccI GTMKAC 1 cut(s) 1607
AccII CGCG 4 cut(s) 605, 789, 1221, 1602
AclWI GGATC 7 cut(s) 485, 674, 758, 900, 1056, 1278, 1291
AcoI YGGCCR 2 cut(s) 240, 708
AcsI RAATTY 4 cut(s) 284, 742, 1007, 1130
AcuI CTGAAG 2 cut(s) 1332, 1364
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 4 cut(s) 455, 566, 1038, 1169
AfeI AGCGCT 1 cut(s) 781
AfiI CCNNNNNNNGG 7 cut(s) 124, 238, 510, 647, 648, 703, 1075
AflIII ACRYGT 2 cut(s) 426, 1150
AgsI TTSAA 4 cut(s) 275, 421, 799, 1463
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 1 cut(s) 992
AjuI GAANNNNNNNTTGG 4 cut(s) 41, 73, 1138, 1170
AluBI AGCT 6 cut(s) 88, 590, 1234, 1459, 1466, 1567
AluI AGCT 6 cut(s) 88, 590, 1234, 1459, 1466, 1567
Alw21I GWGCWC 2 cut(s) 171, 1110
Alw26I GTCTC 2 cut(s) 1301, 1547
AlwI GGATC 7 cut(s) 485, 674, 758, 900, 1056, 1278, 1291
Ama87I CYCGRG 4 cut(s) 124, 164, 1109, 1527
Aor51HI AGCGCT 1 cut(s) 781
AoxI GGCC 5 cut(s) 115, 147, 240, 708, 1125
ApeKI GCWGC 5 cut(s) 590, 1054, 1343, 1436, 1456
ApoI RAATTY 4 cut(s) 284, 742, 1007, 1130
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
Asp700I GAANNNNTTC 3 cut(s) 627, 1273, 1318
AspLEI GCGC 5 cut(s) 607, 782, 789, 1221, 1602
AspS9I GGNCC 2 cut(s) 259, 694
AsuC2I CCSGG 4 cut(s) 125, 126, 1528, 1529
AsuHPI GGTGA 8 cut(s) 37, 85, 175, 352, 863, 869, 878, 1197
AvaI CYCGRG 4 cut(s) 124, 164, 1109, 1527
AvaII GGWCC 2 cut(s) 259, 694
BamHI GGATCC 1 cut(s) 1283
BauI CACGAG 1 cut(s) 699
Bbv12I GWGCWC 2 cut(s) 171, 1110
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 5 cut(s) 577, 1066, 1330, 1423, 1468
BccI CCATC 6 cut(s) 286, 541, 641, 842, 848, 1394
BceAI ACGGC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 994
BciVI GTATCC 1 cut(s) 966
BcnI CCSGG 4 cut(s) 125, 126, 1528, 1529
BcoDI GTCTC 2 cut(s) 1301, 1547
BfaI CTAG 4 cut(s) 113, 554, 1427, 1615
BfmI CTRYAG 3 cut(s) 486, 915, 1479
BfoI RGCGCY 1 cut(s) 783
BfuI GTATCC 1 cut(s) 966
BglII AGATCT 1 cut(s) 1475
BisI GCNGC 9 cut(s) 355, 465, 527, 591, 708, 1055, 1344, 1437, 1457
BlpI GCTNAGC 1 cut(s) 783
BlsI GCNGC 9 cut(s) 356, 466, 528, 592, 709, 1056, 1345, 1438, 1458
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 5 cut(s) 125, 126, 994, 1528, 1529
Bme18I GGWCC 2 cut(s) 259, 694
BmeT110I CYCGRG 4 cut(s) 124, 164, 1109, 1527
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 2 cut(s) 259, 694
BmiI GGNNCC 3 cut(s) 695, 696, 1285
BmrFI CCNGG 5 cut(s) 125, 126, 994, 1528, 1529
BmsI GCATC 3 cut(s) 118, 402, 1006
BpmI CTGGAG 1 cut(s) 1490
Bpu10I CCTNAGC 1 cut(s) 389
Bpu1102I GCTNAGC 1 cut(s) 783
BpuEI CTTGAG 1 cut(s) 454
BpuMI CCSGG 4 cut(s) 125, 126, 1528, 1529
BsaAI YACGTR 1 cut(s) 1171
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 8 cut(s) 48, 124, 337, 400, 642, 711, 751, 1527
BsaWI WCCGGW 2 cut(s) 503, 1560
Bsc4I CCNNNNNNNGG 7 cut(s) 124, 238, 510, 647, 648, 703, 1075
Bse1I ACTGG 2 cut(s) 1100, 1220
Bse3DI GCAATG 2 cut(s) 104, 1364
BseBI CCWGG 1 cut(s) 994
BseDI CCNNGG 8 cut(s) 48, 124, 337, 400, 642, 711, 751, 1527
BseGI GGATG 4 cut(s) 162, 396, 552, 652
BseLI CCNNNNNNNGG 7 cut(s) 124, 238, 510, 647, 648, 703, 1075
BseMI GCAATG 2 cut(s) 104, 1364
BseMII CTCAG 6 cut(s) 152, 379, 403, 740, 797, 812
BseNI ACTGG 2 cut(s) 1100, 1220
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 5 cut(s) 577, 1066, 1330, 1423, 1468
Bsh1236I CGCG 4 cut(s) 605, 789, 1221, 1602
BshFI GGCC 5 cut(s) 117, 149, 242, 710, 1127
BsiHKAI GWGCWC 2 cut(s) 171, 1110
BsiHKCI CYCGRG 4 cut(s) 124, 164, 1109, 1527
BsiSI CCGG 4 cut(s) 125, 504, 1528, 1561
BslFI GGGAC 4 cut(s) 10, 707, 715, 1128
BslI CCNNNNNNNGG 7 cut(s) 124, 238, 510, 647, 648, 703, 1075
BsmAI GTCTC 2 cut(s) 1301, 1547
BsmBI CGTCTC 1 cut(s) 1301
BsmFI GGGAC 4 cut(s) 10, 707, 715, 1128
BsnI GGCC 5 cut(s) 117, 149, 242, 710, 1127
BsoBI CYCGRG 4 cut(s) 124, 164, 1109, 1527
Bsp1286I GDGCHC 2 cut(s) 171, 1110
Bsp1407I TGTACA 1 cut(s) 453
Bsp143I GATC 8 cut(s) 490, 679, 763, 772, 892, 1048, 1283, 1475
Bsp1720I GCTNAGC 1 cut(s) 783
Bsp19I CCATGG 2 cut(s) 642, 751
BspANI GGCC 5 cut(s) 117, 149, 242, 710, 1127
BspCNI CTCAG 6 cut(s) 151, 378, 402, 739, 796, 813
BspFNI CGCG 4 cut(s) 605, 789, 1221, 1602
BspLI GGNNCC 3 cut(s) 695, 696, 1285
BspMAI CTGCAG 2 cut(s) 919, 1483
BspPI GGATC 7 cut(s) 485, 674, 758, 900, 1056, 1278, 1291
BspQI GCTCTTC 2 cut(s) 95, 1293
BsrBI CCGCTC 1 cut(s) 467
BsrDI GCAATG 2 cut(s) 104, 1364
BsrGI TGTACA 1 cut(s) 453
BsrI ACTGG 2 cut(s) 1100, 1220
BssECI CCNNGG 8 cut(s) 48, 124, 337, 400, 642, 711, 751, 1527
BssMI GATC 8 cut(s) 490, 679, 763, 772, 892, 1048, 1283, 1475
BssNAI GTATAC 1 cut(s) 1608
BssNI GRCGYC 1 cut(s) 357
BssSI CACGAG 1 cut(s) 699
BssT1I CCWWGG 5 cut(s) 48, 337, 642, 711, 751
Bst1107I GTATAC 1 cut(s) 1608
Bst2BI CACGAG 1 cut(s) 699
Bst2UI CCWGG 1 cut(s) 994
Bst4CI ACNGT 5 cut(s) 57, 173, 665, 863, 1612
BstACI GRCGYC 1 cut(s) 357
BstAUI TGTACA 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 1171
BstC8I GCNNGC 3 cut(s) 86, 1069, 1329
BstDEI CTNAG 8 cut(s) 138, 365, 389, 726, 776, 783, 821, 948
BstDSI CCRYGG 2 cut(s) 642, 751
BstEII GGTNACC 1 cut(s) 181
BstF5I GGATG 4 cut(s) 162, 396, 552, 652
BstFNI CGCG 4 cut(s) 605, 789, 1221, 1602
BstH2I RGCGCY 1 cut(s) 783
BstHHI GCGC 5 cut(s) 607, 782, 789, 1221, 1602
BstKTI GATC 8 cut(s) 493, 682, 766, 775, 895, 1051, 1286, 1478
BstMAI GTCTC 2 cut(s) 1301, 1547
BstMBI GATC 8 cut(s) 490, 679, 763, 772, 892, 1048, 1283, 1475
BstMWI GCNNNNNNNGC 3 cut(s) 713, 722, 786
BstNI CCWGG 1 cut(s) 994
BstNSI RCATGY 2 cut(s) 1154, 1357
BstPI GGTNACC 1 cut(s) 181
BstSCI CCNGG 5 cut(s) 123, 124, 992, 1526, 1527
BstSFI CTRYAG 3 cut(s) 486, 915, 1479
BstUI CGCG 4 cut(s) 605, 789, 1221, 1602
BstV1I GCAGC 5 cut(s) 577, 1066, 1330, 1423, 1468
BstX2I RGATCY 3 cut(s) 490, 1283, 1475
BstXI CCANNNNNNTGG 2 cut(s) 690, 1215
BstYI RGATCY 3 cut(s) 490, 1283, 1475
BstZ17I GTATAC 1 cut(s) 1608
BsuI GTATCC 1 cut(s) 966
BsuRI GGCC 5 cut(s) 117, 149, 242, 710, 1127
BtgI CCRYGG 2 cut(s) 642, 751
BtgZI GCGATG 1 cut(s) 858
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 4 cut(s) 162, 396, 552, 652
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 3 cut(s) 29, 469, 1107
Cac8I GCNNGC 3 cut(s) 86, 1069, 1329
CfoI GCGC 5 cut(s) 607, 782, 789, 1221, 1602
Cfr13I GGNCC 2 cut(s) 259, 694
Cfr9I CCCGGG 2 cut(s) 124, 1527
CseI GACGC 2 cut(s) 346, 611
Csp6I GTAC 4 cut(s) 454, 565, 1037, 1168
CspCI CAANNNNNGTGG 2 cut(s) 1569, 1604
CviAII CATG 8 cut(s) 238, 252, 256, 643, 752, 839, 1151, 1354
CviQI GTAC 4 cut(s) 454, 565, 1037, 1168
DdeI CTNAG 8 cut(s) 138, 365, 389, 726, 776, 783, 821, 948
DpnI GATC 8 cut(s) 492, 681, 765, 774, 894, 1050, 1285, 1477
DpnII GATC 8 cut(s) 490, 679, 763, 772, 892, 1048, 1283, 1475
EaeI YGGCCR 2 cut(s) 240, 708
EciI GGCGGA 1 cut(s) 827
Eco130I CCWWGG 5 cut(s) 48, 337, 642, 711, 751
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 259, 694
Eco47III AGCGCT 1 cut(s) 781
Eco57I CTGAAG 2 cut(s) 1332, 1364
Eco88I CYCGRG 4 cut(s) 124, 164, 1109, 1527
Eco91I GGTNACC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 694
EcoO65I GGTNACC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 992
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 5 cut(s) 48, 337, 642, 711, 751
EcoT22I ATGCAT 1 cut(s) 257
ErhI CCWWGG 5 cut(s) 48, 337, 642, 711, 751
Esp3I CGTCTC 1 cut(s) 1301
FaeI CATG 8 cut(s) 241, 255, 259, 646, 755, 842, 1154, 1357
FaqI GGGAC 4 cut(s) 10, 707, 715, 1128
FatI CATG 8 cut(s) 237, 251, 255, 642, 751, 838, 1150, 1353
FauI CCCGC 2 cut(s) 1076, 1595
FauNDI CATATG 1 cut(s) 1026
FblI GTMKAC 1 cut(s) 1607
Fnu4HI GCNGC 9 cut(s) 355, 465, 527, 591, 708, 1055, 1344, 1437, 1457
FokI GGATG 4 cut(s) 169, 383, 559, 659
Fsp4HI GCNGC 9 cut(s) 355, 465, 527, 591, 708, 1055, 1344, 1437, 1457
FspBI CTAG 4 cut(s) 113, 554, 1427, 1615
GlaI GCGC 5 cut(s) 606, 781, 788, 1220, 1601
GluI GCNGC 9 cut(s) 355, 465, 527, 591, 708, 1055, 1344, 1437, 1457
GsuI CTGGAG 1 cut(s) 1490
HaeII RGCGCY 1 cut(s) 783
HaeIII GGCC 5 cut(s) 117, 149, 242, 710, 1127
HapII CCGG 4 cut(s) 125, 504, 1528, 1561
HgaI GACGC 2 cut(s) 346, 611
HhaI GCGC 5 cut(s) 607, 782, 789, 1221, 1602
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 8 cut(s) 241, 255, 259, 646, 755, 842, 1154, 1357
Hin6I GCGC 5 cut(s) 605, 780, 787, 1219, 1600
HinP1I GCGC 5 cut(s) 605, 780, 787, 1219, 1600
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HinfI GANTC 8 cut(s) 42, 131, 248, 302, 369, 823, 1252, 1484
HpaI GTTAAC 1 cut(s) 661
HpaII CCGG 4 cut(s) 125, 504, 1528, 1561
HphI GGTGA 8 cut(s) 37, 85, 175, 352, 863, 869, 878, 1197
Hpy166II GTNNAC 3 cut(s) 661, 1205, 1608
Hpy188III TCNNGA 9 cut(s) 154, 320, 796, 937, 1281, 1427, 1469, 1488, 1570
Hpy8I GTNNAC 3 cut(s) 661, 1205, 1608
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 5 cut(s) 160, 744, 1388, 1529, 1538
HpyCH4III ACNGT 5 cut(s) 57, 173, 665, 863, 1612
HpyCH4IV ACGT 2 cut(s) 426, 1170
HpyF10VI GCNNNNNNNGC 3 cut(s) 713, 722, 786
HpyF3I CTNAG 8 cut(s) 138, 365, 389, 726, 776, 783, 821, 948
HpySE526I ACGT 2 cut(s) 426, 1170
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 8 cut(s) 241, 255, 259, 646, 755, 842, 1154, 1357
HspAI GCGC 5 cut(s) 605, 780, 787, 1219, 1600
KflI GGGWCCC 1 cut(s) 694
KspAI GTTAAC 1 cut(s) 661
Kzo9I GATC 8 cut(s) 490, 679, 763, 772, 892, 1048, 1283, 1475
LguI GCTCTTC 2 cut(s) 95, 1293
LmnI GCTCC 2 cut(s) 587, 1453
Lsp1109I GCAGC 5 cut(s) 577, 1066, 1330, 1423, 1468
LweI GCATC 3 cut(s) 118, 402, 1006
MaeI CTAG 4 cut(s) 113, 554, 1427, 1615
MaeII ACGT 2 cut(s) 426, 1170
MaeIII GTNAC 5 cut(s) 119, 181, 358, 513, 857
MalI GATC 8 cut(s) 492, 681, 765, 774, 894, 1050, 1285, 1477
MbiI CCGCTC 1 cut(s) 467
MboI GATC 8 cut(s) 490, 679, 763, 772, 892, 1048, 1283, 1475
MflI RGATCY 3 cut(s) 490, 1283, 1475
MhlI GDGCHC 2 cut(s) 171, 1110
MluCI AATT 6 cut(s) 284, 532, 742, 1007, 1130, 1419
MlyI GAGTC 5 cut(s) 140, 257, 832, 1261, 1493
Mph1103I ATGCAT 1 cut(s) 257
MroXI GAANNNNTTC 3 cut(s) 627, 1273, 1318
MseI TTAA 2 cut(s) 207, 660
MslI CAYNNNNRTG 3 cut(s) 688, 837, 843
MspI CCGG 4 cut(s) 125, 504, 1528, 1561
MspR9I CCNGG 5 cut(s) 125, 126, 994, 1528, 1529
MvaI CCWGG 1 cut(s) 994
MvnI CGCG 4 cut(s) 605, 789, 1221, 1602
MwoI GCNNNNNNNGC 3 cut(s) 713, 722, 786
NciI CCSGG 4 cut(s) 125, 126, 1528, 1529
NcoI CCATGG 2 cut(s) 642, 751
NdeI CATATG 1 cut(s) 1026
NdeII GATC 8 cut(s) 490, 679, 763, 772, 892, 1048, 1283, 1475
NlaIII CATG 8 cut(s) 241, 255, 259, 646, 755, 842, 1154, 1357
NlaIV GGNNCC 3 cut(s) 695, 696, 1285
NmuCI GTSAC 4 cut(s) 119, 181, 358, 857
NsiI ATGCAT 1 cut(s) 257
NspI RCATGY 2 cut(s) 1154, 1357
PaeR7I CTCGAG 2 cut(s) 164, 1109
PciI ACATGT 1 cut(s) 1150
PciSI GCTCTTC 2 cut(s) 95, 1293
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PdmI GAANNNNTTC 3 cut(s) 627, 1273, 1318
PfeI GAWTC 3 cut(s) 42, 302, 369
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 9 cut(s) 356, 466, 528, 592, 709, 1056, 1345, 1438, 1458
PleI GAGTC 5 cut(s) 139, 256, 831, 1260, 1492
PpsI GAGTC 5 cut(s) 139, 256, 831, 1260, 1492
Ppu21I YACGTR 1 cut(s) 1171
PpuMI RGGWCCY 1 cut(s) 694
PscI ACATGT 1 cut(s) 1150
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 1 cut(s) 992
PspEI GGTNACC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 992
PspN4I GGNNCC 3 cut(s) 695, 696, 1285
PspPI GGNCC 2 cut(s) 259, 694
PspPPI RGGWCCY 1 cut(s) 694
PspXI VCTCGAGB 2 cut(s) 164, 1109
PstI CTGCAG 2 cut(s) 919, 1483
PsuI RGATCY 3 cut(s) 490, 1283, 1475
RsaI GTAC 4 cut(s) 455, 566, 1038, 1169
RsaNI GTAC 4 cut(s) 454, 565, 1037, 1168
RseI CAYNNNNRTG 3 cut(s) 688, 837, 843
SapI GCTCTTC 2 cut(s) 95, 1293
SaqAI TTAA 2 cut(s) 207, 660
SatI GCNGC 9 cut(s) 355, 465, 527, 591, 708, 1055, 1344, 1437, 1457
Sau3AI GATC 8 cut(s) 490, 679, 763, 772, 892, 1048, 1283, 1475
Sau96I GGNCC 2 cut(s) 259, 694
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 5 cut(s) 140, 257, 832, 1261, 1493
ScrFI CCNGG 5 cut(s) 125, 126, 994, 1528, 1529
SduI GDGCHC 2 cut(s) 171, 1110
SfaNI GCATC 3 cut(s) 118, 402, 1006
SfcI CTRYAG 3 cut(s) 486, 915, 1479
Sfr274I CTCGAG 2 cut(s) 164, 1109
SinI GGWCC 2 cut(s) 259, 694
SlaI CTCGAG 2 cut(s) 164, 1109
SmaI CCCGGG 2 cut(s) 126, 1529
SmiMI CAYNNNNRTG 3 cut(s) 688, 837, 843
SmlI CTYRAG 3 cut(s) 164, 433, 1109
SmoI CTYRAG 3 cut(s) 164, 433, 1109
Sse9I AATT 6 cut(s) 284, 532, 742, 1007, 1130, 1419
SspMI CTAG 4 cut(s) 113, 554, 1427, 1615
StyD4I CCNGG 5 cut(s) 123, 124, 992, 1526, 1527
StyI CCWWGG 5 cut(s) 48, 337, 642, 711, 751
TaaI ACNGT 5 cut(s) 57, 173, 665, 863, 1612
TaiI ACGT 2 cut(s) 429, 1173
TaqI TCGA 4 cut(s) 165, 900, 1110, 1255
TasI AATT 6 cut(s) 284, 532, 742, 1007, 1130, 1419
TatI WGTACW 3 cut(s) 453, 564, 1036
TauI GCSGC 4 cut(s) 357, 467, 529, 710
TfiI GAWTC 3 cut(s) 42, 302, 369
Tru1I TTAA 2 cut(s) 207, 660
Tru9I TTAA 2 cut(s) 207, 660
TscAI CASTG 3 cut(s) 36, 476, 1107
TseFI GTSAC 4 cut(s) 119, 181, 358, 857
TseI GCWGC 5 cut(s) 590, 1054, 1343, 1436, 1456
Tsp45I GTSAC 4 cut(s) 119, 181, 358, 857
TspDTI ATGAA 4 cut(s) 181, 297, 819, 1520
TspGWI ACGGA 1 cut(s) 1158
TspMI CCCGGG 2 cut(s) 124, 1527
TspRI CASTG 3 cut(s) 36, 476, 1107
Van91I CCANNNNNTGG 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 259, 694
XapI RAATTY 4 cut(s) 284, 742, 1007, 1130
XbaI TCTAGA 1 cut(s) 1426
XceI RCATGY 2 cut(s) 1154, 1357
XhoI CTCGAG 2 cut(s) 164, 1109
XmaI CCCGGG 2 cut(s) 124, 1527
XmiI GTMKAC 1 cut(s) 1607
XmnI GAANNNNTTC 3 cut(s) 627, 1273, 1318
XspI CTAG 4 cut(s) 113, 554, 1427, 1615
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.