FvH4_7g20310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000612
Physical Location & Seq
Forward (+)
16534197 .. 16538002
3806 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20310.t2

Sequence Viewer

Length: 978 bp
ATGGGTGCTTCTGGAAACCCTAATACCTCTTCTGCTTTGCAAAAACGAATCTTTCCTAGAAGATTAAAGCCCCTGAATGCTACTGTCTCAACCCAGGAGTTCAATTCCTTCCACGCCATTGACCGCAGGCTCTTCACCCGTTTGGTGTTGGGTCTGGGCCGTGACCCGACCGAGTCGGCCCAAGTCATGGCTCTGTGGATGTGGCTGGAGCGCTATGGCGGCGAGGTTAACTTGGTGTACAAGGCACTGATGACTCTACCTGACTCCCTTCTTGATTCTATGGCTAACGAGTCGATTTCGGCATTGAATTGCATTCGGAGCAATGTGGTTCCTTTCTCTGATTTGGACATTGTCCCTGGGATTCCAATGCTGCAAGCCATGAGCAGCAGTGGTGTCACACTTGGGTACTTTTATGAAAATCGGGGAGAAATTGCGAGTGGAGTTATCACATTGCTTAAAGATGTTTGCTTGAGAGTGTTTGAGGACTTGTTGTTTGAGAAAATTGCTCAGGGCAATGTGAAAGGGGGTGATGATGTGCCATTGTATTGGCATCGGCAATTGAATAGTGCTAATCTTTACTATTTGCGTGGAGGTTTTGTTTCTGATCAAGAGCTTGCAGTTCAGCGCAAGGATTTGAATAACGAAATGGAGGAGGTTTTGAGGTGTTTGAATGTGAATGATCTTGAAGTAGTTAAGGTTCACCCTCAGGACAGGACTATTTTCCTGACATTTTCTAAAGGGCATCCACTTTCAGAAAATGATCTCAGAGACTTCTTCACTAGGAATTTTGGGGAGATTATTGATGAGATTCTTATAGCTAAGGAACCTTTGTATGGGCGGCTTGTGCTACATTCTGCTTCCTCCATTCCTGTGGTTCTTGGTGTGAAAGGCAAGGTCCAATTCTCCATTAATGGCAGGCATGTTCGGGCAAGGAAATTTGTCCCCAAGGATGCTCGTGCTGGGCAAAGGAGAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

36.54

Weight (kDa)

8.37

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 187
AciI CCGC 3 cut(s) 124, 219, 838
AcsI RAATTY 2 cut(s) 784, 935
AfaI GTAC 2 cut(s) 239, 407
AfeI AGCGCT 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 187, 833
AgsI TTSAA 6 cut(s) 103, 307, 562, 637, 670, 686
AjnI CCWGG 2 cut(s) 93, 355
AluBI AGCT 2 cut(s) 613, 818
AluI AGCT 2 cut(s) 613, 818
Alw26I GTCTC 3 cut(s) 91, 762, 966
Aor51HI AGCGCT 1 cut(s) 212
AoxI GGCC 2 cut(s) 157, 177
ApeKI GCWGC 2 cut(s) 370, 384
ApoI RAATTY 2 cut(s) 784, 935
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
AseI ATTAAT 1 cut(s) 909
AspLEI GCGC 2 cut(s) 213, 627
AspS9I GGNCC 3 cut(s) 157, 178, 895
AsuHPI GGTGA 3 cut(s) 127, 539, 692
AvaII GGWCC 1 cut(s) 895
AxyI CCTNAGG 1 cut(s) 705
BauI CACGAG 1 cut(s) 954
BbvI GCAGC 2 cut(s) 357, 396
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 2 cut(s) 95, 357
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 3 cut(s) 91, 762, 966
BfaI CTAG 2 cut(s) 57, 780
BfoI RGCGCY 1 cut(s) 214
BisI GCNGC 4 cut(s) 220, 371, 385, 839
BlsI GCNGC 4 cut(s) 221, 372, 386, 840
Bme1390I CCNGG 2 cut(s) 95, 357
Bme18I GGWCC 1 cut(s) 895
BmgT120I GGNCC 3 cut(s) 157, 178, 895
BmiI GGNNCC 2 cut(s) 330, 825
BmrFI CCNGG 2 cut(s) 95, 357
BmsI GCATC 3 cut(s) 559, 751, 940
BpmI CTGGAG 1 cut(s) 227
Bpu10I CCTNAGC 2 cut(s) 507, 819
BpuEI CTTGAG 1 cut(s) 490
BsaJI CCNNGG 4 cut(s) 93, 355, 356, 945
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 833
Bse21I CCTNAGG 1 cut(s) 705
Bse3DI GCAATG 3 cut(s) 328, 449, 520
BseBI CCWGG 2 cut(s) 95, 357
BseDI CCNNGG 4 cut(s) 93, 355, 356, 945
BseGI GGATG 3 cut(s) 204, 742, 955
BseLI CCNNNNNNNGG 2 cut(s) 187, 833
BseMI GCAATG 3 cut(s) 328, 449, 520
BseMII CTCAG 3 cut(s) 521, 719, 778
BseRI GAGGAG 1 cut(s) 665
BseXI GCAGC 2 cut(s) 357, 396
BseYI CCCAGC 1 cut(s) 959
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 2 cut(s) 159, 179
BsiEI CGRYCG 1 cut(s) 171
BslFI GGGAC 2 cut(s) 338, 926
BslI CCNNNNNNNGG 2 cut(s) 187, 833
BsmAI GTCTC 3 cut(s) 91, 762, 966
BsmFI GGGAC 2 cut(s) 338, 926
BsmI GAATGC 2 cut(s) 82, 312
BsnI GGCC 2 cut(s) 159, 179
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 3 cut(s) 604, 679, 760
BspACI CCGC 3 cut(s) 124, 219, 838
BspANI GGCC 2 cut(s) 159, 179
BspCNI CTCAG 3 cut(s) 520, 718, 777
BspLI GGNNCC 2 cut(s) 330, 825
BspQI GCTCTTC 1 cut(s) 137
BsrDI GCAATG 3 cut(s) 328, 449, 520
BsrGI TGTACA 1 cut(s) 237
BssECI CCNNGG 4 cut(s) 93, 355, 356, 945
BssMI GATC 3 cut(s) 604, 679, 760
BssSI CACGAG 1 cut(s) 954
BssT1I CCWWGG 1 cut(s) 945
Bst2BI CACGAG 1 cut(s) 954
Bst2UI CCWGG 2 cut(s) 95, 357
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 2 cut(s) 34, 137
BstAUI TGTACA 1 cut(s) 237
BstC8I GCNNGC 4 cut(s) 128, 375, 615, 917
BstDEI CTNAG 4 cut(s) 507, 705, 764, 819
BstF5I GGATG 3 cut(s) 204, 742, 955
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 2 cut(s) 213, 627
BstKTI GATC 3 cut(s) 607, 682, 763
BstMAI GTCTC 3 cut(s) 91, 762, 966
BstMBI GATC 3 cut(s) 604, 679, 760
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 3 cut(s) 219, 318, 844
BstNI CCWGG 2 cut(s) 95, 357
BstNSI RCATGY 1 cut(s) 923
BstSCI CCNGG 2 cut(s) 93, 355
BstV1I GCAGC 2 cut(s) 357, 396
BstXI CCANNNNNNTGG 2 cut(s) 546, 871
Bsu36I CCTNAGG 1 cut(s) 705
BsuRI GGCC 2 cut(s) 159, 179
BtsCI GGATG 3 cut(s) 204, 742, 955
BtsI GCAGTG 1 cut(s) 394
BtsIMutI CAGTG 2 cut(s) 245, 394
Cac8I GCNNGC 4 cut(s) 128, 375, 615, 917
CfoI GCGC 2 cut(s) 213, 627
Cfr13I GGNCC 3 cut(s) 157, 178, 895
Csp6I GTAC 2 cut(s) 238, 406
CviAII CATG 3 cut(s) 187, 379, 920
CviQI GTAC 2 cut(s) 238, 406
DdeI CTNAG 4 cut(s) 507, 705, 764, 819
DpnI GATC 3 cut(s) 606, 681, 762
DpnII GATC 3 cut(s) 604, 679, 760
Eam1104I CTCTTC 2 cut(s) 34, 137
EarI CTCTTC 2 cut(s) 34, 137
Eco130I CCWWGG 1 cut(s) 945
Eco47I GGWCC 1 cut(s) 895
Eco47III AGCGCT 1 cut(s) 212
Eco81I CCTNAGG 1 cut(s) 705
EcoRII CCWGG 2 cut(s) 93, 355
EcoT14I CCWWGG 1 cut(s) 945
ErhI CCWWGG 1 cut(s) 945
FaeI CATG 3 cut(s) 190, 382, 923
FaiI YATR 8 cut(s) 188, 216, 281, 380, 414, 815, 834, 921
FaqI GGGAC 2 cut(s) 338, 926
FatI CATG 3 cut(s) 186, 378, 919
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 4 cut(s) 220, 371, 385, 839
FokI GGATG 3 cut(s) 211, 729, 962
Fsp4HI GCNGC 4 cut(s) 220, 371, 385, 839
FspBI CTAG 2 cut(s) 57, 780
GlaI GCGC 2 cut(s) 212, 626
GluI GCNGC 4 cut(s) 220, 371, 385, 839
GsaI CCCAGC 1 cut(s) 963
GsuI CTGGAG 1 cut(s) 227
HaeII RGCGCY 1 cut(s) 214
HaeIII GGCC 2 cut(s) 159, 179
HhaI GCGC 2 cut(s) 213, 627
Hin1II CATG 3 cut(s) 190, 382, 923
Hin6I GCGC 2 cut(s) 211, 625
HinP1I GCGC 2 cut(s) 211, 625
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 8 cut(s) 48, 173, 253, 263, 275, 290, 361, 808
HpaI GTTAAC 1 cut(s) 229
HphI GGTGA 3 cut(s) 127, 539, 692
Hpy166II GTNNAC 3 cut(s) 229, 238, 700
Hpy188I TCNGA 5 cut(s) 318, 340, 604, 754, 767
Hpy188III TCNNGA 6 cut(s) 12, 272, 608, 683, 707, 724
Hpy8I GTNNAC 3 cut(s) 229, 238, 700
HpyAV CCTTC 2 cut(s) 118, 278
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 4 cut(s) 40, 312, 373, 617
HpyF10VI GCNNNNNNNGC 3 cut(s) 219, 318, 844
HpyF3I CTNAG 4 cut(s) 507, 705, 764, 819
Hsp92II CATG 3 cut(s) 190, 382, 923
HspAI GCGC 2 cut(s) 211, 625
Ksp22I TGATCA 1 cut(s) 604
KspAI GTTAAC 1 cut(s) 229
Kzo9I GATC 3 cut(s) 604, 679, 760
LguI GCTCTTC 1 cut(s) 137
LmnI GCTCC 2 cut(s) 208, 318
Lsp1109I GCAGC 2 cut(s) 357, 396
LweI GCATC 3 cut(s) 559, 751, 940
MaeI CTAG 2 cut(s) 57, 780
MaeIII GTNAC 2 cut(s) 161, 394
MalI GATC 3 cut(s) 606, 681, 762
MboI GATC 3 cut(s) 604, 679, 760
MboII GAAGA 4 cut(s) 21, 72, 124, 766
MfeI CAATTG 1 cut(s) 557
MluCI AATT 8 cut(s) 103, 307, 429, 501, 557, 784, 899, 935
MlyI GAGTC 4 cut(s) 182, 247, 257, 299
MnlI CCTC 9 cut(s) 37, 217, 475, 584, 643, 646, 654, 714, 871
MseI TTAA 5 cut(s) 65, 228, 456, 693, 909
MslI CAYNNNNRTG 1 cut(s) 869
MspR9I CCNGG 2 cut(s) 95, 357
MunI CAATTG 1 cut(s) 557
Mva1269I GAATGC 2 cut(s) 82, 312
MvaI CCWGG 2 cut(s) 95, 357
MwoI GCNNNNNNNGC 3 cut(s) 219, 318, 844
NdeII GATC 3 cut(s) 604, 679, 760
NlaIII CATG 3 cut(s) 190, 382, 923
NlaIV GGNNCC 2 cut(s) 330, 825
NmuCI GTSAC 2 cut(s) 161, 394
NspI RCATGY 1 cut(s) 923
PasI CCCWGGG 1 cut(s) 356
PciSI GCTCTTC 1 cut(s) 137
PctI GAATGC 2 cut(s) 82, 312
PfeI GAWTC 4 cut(s) 48, 275, 361, 808
PflFI GACNNNGTC 2 cut(s) 172, 350
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 4 cut(s) 221, 372, 386, 840
PleI GAGTC 4 cut(s) 181, 247, 257, 298
PpsI GAGTC 4 cut(s) 181, 247, 257, 298
PshBI ATTAAT 1 cut(s) 909
Psp6I CCWGG 2 cut(s) 93, 355
PspFI CCCAGC 1 cut(s) 959
PspGI CCWGG 2 cut(s) 93, 355
PspN4I GGNNCC 2 cut(s) 330, 825
PspPI GGNCC 3 cut(s) 157, 178, 895
PsrI GAACNNNNNNTAC 2 cut(s) 681, 713
PsyI GACNNNGTC 2 cut(s) 172, 350
RsaI GTAC 2 cut(s) 239, 407
RsaNI GTAC 2 cut(s) 238, 406
RseI CAYNNNNRTG 1 cut(s) 869
SapI GCTCTTC 1 cut(s) 137
SaqAI TTAA 5 cut(s) 65, 228, 456, 693, 909
SatI GCNGC 4 cut(s) 220, 371, 385, 839
Sau3AI GATC 3 cut(s) 604, 679, 760
Sau96I GGNCC 3 cut(s) 157, 178, 895
SchI GAGTC 4 cut(s) 182, 247, 257, 299
ScrFI CCNGG 2 cut(s) 95, 357
SfaNI GCATC 3 cut(s) 559, 751, 940
SinI GGWCC 1 cut(s) 895
SmiMI CAYNNNNRTG 1 cut(s) 869
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 8 cut(s) 103, 307, 429, 501, 557, 784, 899, 935
SsiI CCGC 3 cut(s) 124, 219, 838
SspMI CTAG 2 cut(s) 57, 780
StyD4I CCNGG 2 cut(s) 93, 355
StyI CCWWGG 1 cut(s) 945
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 293
TaqII GACCGA 1 cut(s) 185
TasI AATT 8 cut(s) 103, 307, 429, 501, 557, 784, 899, 935
TatI WGTACW 1 cut(s) 237
TauI GCSGC 2 cut(s) 222, 841
TfiI GAWTC 4 cut(s) 48, 275, 361, 808
Tru1I TTAA 5 cut(s) 65, 228, 456, 693, 909
Tru9I TTAA 5 cut(s) 65, 228, 456, 693, 909
TscAI CASTG 2 cut(s) 252, 394
TseFI GTSAC 2 cut(s) 161, 394
TseI GCWGC 2 cut(s) 370, 384
Tsp45I GTSAC 2 cut(s) 161, 394
TspDTI ATGAA 1 cut(s) 429
TspRI CASTG 2 cut(s) 252, 394
Tth111I GACNNNGTC 2 cut(s) 172, 350
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 895
VspI ATTAAT 1 cut(s) 909
XapI RAATTY 2 cut(s) 784, 935
XceI RCATGY 1 cut(s) 923
XspI CTAG 2 cut(s) 57, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.