FvH4_2g11491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000612
Physical Location & Seq
Reverse (-)
10057217 .. 10058473
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11491.t1

Sequence Viewer

Length: 1257 bp
ATGGCATTCTTACCTCTTATGGTACACGATGCTTCCCACGTACTGTTCCAGCCAACACTTGTTCAAAACAATTGGAATACAATCAGGAGCACCAATGCAGCTTTGGTACACAATGATATTGATGTTTCCGTCATTCCTCCACTAGAACCTGAAGAAGATCGGACTATTGTTGTAACATTCTCTCCGGTAGACCCTATTCCGGAATGTGAGCTTAGAGACTTCTTCATTTGGTGTATATATTGTACTACCGGGGATCAAATTACAGTTACGGATCATCATCATGTTATTGCTGGCATCCGTATGGAACCCGGGGAGCGACCTTGTTGTGCCTACATTGTATTTCGATATGCTTCTTTTGTTGAACGACTCCTTGGTGGAAACCAGATGATAATATTCCACATTAACAGGTACATTGTTTCTGCTAGAAAATATGAGCAGTCTCTAGAAGAGTTTAACAAATTCCATAACATTGATAGGAGGCTCTACACTCGATTAATCTATGATCTGAGACGTGACGTGGATGAATCAGCAGCGGTCATGGCACTATGGATGTCGATTGAGCACATCAGCAAGGAGTTTAACAACTTGGTGAACAAGGCATTGACTCTACCCGACACTGAGCTCAATGCCATAGCTGACGAGACAGTAATAGCCTTGAATTACATTACGACTGATGATATAGAGAGCGACATCGAAATCCCTAAGCTCCAAGCCGTAAGTGATAGTCCTGTCACCCTCAAGTTCTTCCATGACAACCACCATGCAATCATTTGTGGAACGATCAAGTTCCTCAAAGATGTTTGCTTGAAAACCTTCCAGGACTTCCCTCATCAACCGAACTACCATGCCAAGGACAAGCTTGTTGAAGAAAATAGGAGTATTTTTCATCAAGAGAGGGAGATCGAGGATAAAGAAGCGGCGGAGACTAGTAGAAATTCACCATCGGGTGATGAACAAGAGAGGACTCTTTTCCTAACATTCTCTCGAGGTTTCCCCCTATCGGAAAATGAAGTCAGAGAGTGTTTCACTAGGGAATTTGGTGACATTGTTGATCGTATCTACATGCAGGAAGTTAAGGAAAAACTTCAGCAGCCTATTTATGCTCAACTTGTAGTTCGTTCGGCATCCTTGATTCCAATGATTCTTGATGGGAGAAGCAAAGTGGACTTGAGCATAAATGGCAAGCACATTAGGGCCAAAAAATCTGTACCCAAGCTGCGGTCAGATTCATCGGAAGCATCATCGCAACGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

419

Amino Acids

48.17

Weight (kDa)

5.42

Isoelectric Point (pI)

57.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 4 cut(s) 533, 917, 920, 1219
AclWI GGATC 2 cut(s) 261, 279
AcsI RAATTY 3 cut(s) 458, 934, 1034
AcuI CTGAAG 2 cut(s) 171, 1070
AfaI GTAC 6 cut(s) 24, 42, 108, 244, 410, 1209
AfiI CCNNNNNNNGG 4 cut(s) 199, 850, 1000, 1218
AgsI TTSAA 5 cut(s) 65, 362, 658, 808, 866
AhlI ACTAGT 1 cut(s) 926
AjiI CACGTC 2 cut(s) 512, 517
AjnI CCWGG 1 cut(s) 816
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 7 cut(s) 101, 211, 622, 635, 706, 859, 1216
AluI AGCT 7 cut(s) 101, 211, 622, 635, 706, 859, 1216
Alw21I GWGCWC 3 cut(s) 92, 564, 624
Alw26I GTCTC 5 cut(s) 210, 444, 502, 635, 917
AlwI GGATC 2 cut(s) 261, 279
Ama87I CYCGRG 2 cut(s) 308, 984
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 1 cut(s) 1194
ApeKI GCWGC 4 cut(s) 98, 530, 1090, 1216
ApoI RAATTY 3 cut(s) 458, 934, 1034
AseI ATTAAT 1 cut(s) 494
Asp700I GAANNNNTTC 2 cut(s) 812, 1083
AspS9I GGNCC 1 cut(s) 1194
AsuC2I CCSGG 3 cut(s) 250, 309, 310
AsuHPI GGTGA 5 cut(s) 601, 724, 930, 959, 1052
AvaI CYCGRG 2 cut(s) 308, 984
BanII GRGCYC 1 cut(s) 624
Bbv12I GWGCWC 3 cut(s) 92, 564, 624
BbvI GCAGC 4 cut(s) 110, 542, 1102, 1203
BccI CCATC 2 cut(s) 949, 1142
BceAI ACGGC 1 cut(s) 698
BciT130I CCWGG 1 cut(s) 818
BcnI CCSGG 3 cut(s) 250, 309, 310
BcoDI GTCTC 5 cut(s) 210, 444, 502, 635, 917
BcuI ACTAGT 1 cut(s) 926
BfaI CTAG 5 cut(s) 143, 423, 443, 927, 1029
BisI GCNGC 5 cut(s) 99, 531, 918, 1091, 1217
BlsI GCNGC 5 cut(s) 100, 532, 919, 1092, 1218
Bme1390I CCNGG 4 cut(s) 250, 309, 310, 818
BmeT110I CYCGRG 2 cut(s) 308, 984
BmgBI CACGTC 2 cut(s) 512, 517
BmgT120I GGNCC 1 cut(s) 1194
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 4 cut(s) 250, 309, 310, 818
BmsI GCATC 4 cut(s) 19, 303, 1133, 1247
Bpu10I CCTNAGC 1 cut(s) 702
BpuEI CTTGAG 2 cut(s) 722, 1189
BpuMI CCSGG 3 cut(s) 250, 309, 310
BsaAI YACGTR 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 5 cut(s) 249, 308, 309, 370, 849
BsaWI WCCGGW 2 cut(s) 184, 199
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 850, 1000, 1218
Bse8I GATNNNNATC 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 1 cut(s) 818
BseDI CCNNGG 5 cut(s) 249, 308, 309, 370, 849
BseGI GGATG 4 cut(s) 294, 526, 555, 1124
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 4 cut(s) 199, 850, 1000, 1218
BseMII CTCAG 2 cut(s) 497, 609
BseXI GCAGC 4 cut(s) 110, 542, 1102, 1203
BshFI GGCC 1 cut(s) 1196
BsiHKAI GWGCWC 3 cut(s) 92, 564, 624
BsiHKCI CYCGRG 2 cut(s) 308, 984
BsiSI CCGG 4 cut(s) 185, 200, 249, 309
BslI CCNNNNNNNGG 4 cut(s) 199, 850, 1000, 1218
BsmAI GTCTC 5 cut(s) 210, 444, 502, 635, 917
BsmBI CGTCTC 1 cut(s) 502
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 1 cut(s) 1196
BsoBI CYCGRG 2 cut(s) 308, 984
Bsp1286I GDGCHC 3 cut(s) 92, 564, 624
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 8 cut(s) 157, 253, 271, 502, 780, 900, 1051, 1250
BspACI CCGC 4 cut(s) 533, 917, 920, 1219
BspANI GGCC 1 cut(s) 1196
BspCNI CTCAG 2 cut(s) 498, 610
BspEI TCCGGA 1 cut(s) 199
BspHI TCATGA 1 cut(s) 1253
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 2 cut(s) 261, 279
BssECI CCNNGG 5 cut(s) 249, 308, 309, 370, 849
BssMI GATC 8 cut(s) 157, 253, 271, 502, 780, 900, 1051, 1250
BssT1I CCWWGG 2 cut(s) 370, 849
Bst2UI CCWGG 1 cut(s) 818
Bst4CI ACNGT 3 cut(s) 45, 265, 646
Bst6I CTCTTC 1 cut(s) 441
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 292, 1184
BstDEI CTNAG 4 cut(s) 212, 506, 618, 702
BstF5I GGATG 4 cut(s) 294, 526, 555, 1124
BstKTI GATC 8 cut(s) 160, 256, 274, 505, 783, 903, 1054, 1253
BstMAI GTCTC 5 cut(s) 210, 444, 502, 635, 917
BstMBI GATC 8 cut(s) 157, 253, 271, 502, 780, 900, 1051, 1250
BstMWI GCNNNNNNNGC 2 cut(s) 539, 1179
BstNI CCWGG 1 cut(s) 818
BstNSI RCATGY 1 cut(s) 1066
BstSCI CCNGG 4 cut(s) 248, 307, 308, 816
BstV1I GCAGC 4 cut(s) 110, 542, 1102, 1203
BsuRI GGCC 1 cut(s) 1196
BtgZI GCGATG 1 cut(s) 1227
BtrI CACGTC 2 cut(s) 512, 517
BtsCI GGATG 4 cut(s) 294, 526, 555, 1124
BtsIMutI CAGTG 1 cut(s) 615
Cac8I GCNNGC 2 cut(s) 292, 1184
CciI TCATGA 1 cut(s) 1253
Cfr13I GGNCC 1 cut(s) 1194
Cfr9I CCCGGG 1 cut(s) 308
Csp6I GTAC 6 cut(s) 23, 41, 107, 243, 409, 1208
CviAII CATG 7 cut(s) 281, 538, 749, 761, 845, 1063, 1254
CviQI GTAC 6 cut(s) 23, 41, 107, 243, 409, 1208
DdeI CTNAG 4 cut(s) 212, 506, 618, 702
DpnI GATC 8 cut(s) 159, 255, 273, 504, 782, 902, 1053, 1252
DpnII GATC 8 cut(s) 157, 253, 271, 502, 780, 900, 1051, 1250
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
EciI GGCGGA 1 cut(s) 935
Ecl136II GAGCTC 1 cut(s) 622
Eco130I CCWWGG 2 cut(s) 370, 849
Eco24I GRGCYC 1 cut(s) 624
Eco53kI GAGCTC 1 cut(s) 622
Eco57I CTGAAG 2 cut(s) 171, 1070
Eco88I CYCGRG 2 cut(s) 308, 984
EcoICRI GAGCTC 1 cut(s) 622
EcoRII CCWGG 1 cut(s) 816
EcoT14I CCWWGG 2 cut(s) 370, 849
EcoT38I GRGCYC 1 cut(s) 624
ErhI CCWWGG 2 cut(s) 370, 849
Esp3I CGTCTC 1 cut(s) 502
FaeI CATG 7 cut(s) 284, 541, 752, 764, 848, 1066, 1257
FatI CATG 7 cut(s) 280, 537, 748, 760, 844, 1062, 1253
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 5 cut(s) 99, 531, 918, 1091, 1217
FokI GGATG 4 cut(s) 281, 533, 562, 1111
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 5 cut(s) 99, 531, 918, 1091, 1217
FspBI CTAG 5 cut(s) 143, 423, 443, 927, 1029
GluI GCNGC 5 cut(s) 99, 531, 918, 1091, 1217
HaeIII GGCC 1 cut(s) 1196
HapII CCGG 4 cut(s) 185, 200, 249, 309
Hin1II CATG 7 cut(s) 284, 541, 752, 764, 848, 1066, 1257
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 7 cut(s) 366, 524, 604, 964, 1132, 1141, 1226
HpaII CCGG 4 cut(s) 185, 200, 249, 309
HphI GGTGA 5 cut(s) 601, 724, 930, 959, 1052
Hpy166II GTNNAC 5 cut(s) 25, 109, 190, 592, 1165
Hpy188I TCNGA 6 cut(s) 162, 507, 1003, 1016, 1225, 1234
Hpy188III TCNNGA 7 cut(s) 85, 200, 443, 890, 984, 1145, 1254
Hpy8I GTNNAC 5 cut(s) 25, 109, 190, 592, 1165
HpyAV CCTTC 1 cut(s) 823
HpyCH4III ACNGT 3 cut(s) 45, 265, 646
HpyCH4IV ACGT 3 cut(s) 39, 511, 516
HpyCH4V TGCA 3 cut(s) 98, 764, 1066
HpyF10VI GCNNNNNNNGC 2 cut(s) 539, 1179
HpyF3I CTNAG 4 cut(s) 212, 506, 618, 702
HpySE526I ACGT 3 cut(s) 39, 511, 516
Hsp92II CATG 7 cut(s) 284, 541, 752, 764, 848, 1066, 1257
Kpn2I TCCGGA 1 cut(s) 199
Kzo9I GATC 8 cut(s) 157, 253, 271, 502, 780, 900, 1051, 1250
LmnI GCTCC 3 cut(s) 87, 313, 711
Lsp1109I GCAGC 4 cut(s) 110, 542, 1102, 1203
LweI GCATC 4 cut(s) 19, 303, 1133, 1247
MaeI CTAG 5 cut(s) 143, 423, 443, 927, 1029
MaeII ACGT 3 cut(s) 39, 511, 516
MaeIII GTNAC 5 cut(s) 172, 265, 512, 730, 1040
MalI GATC 8 cut(s) 159, 255, 273, 504, 782, 902, 1053, 1252
MboI GATC 8 cut(s) 157, 253, 271, 502, 780, 900, 1051, 1250
MboII GAAGA 6 cut(s) 164, 167, 214, 458, 736, 878
MfeI CAATTG 1 cut(s) 70
MhlI GDGCHC 3 cut(s) 92, 564, 624
MluCI AATT 6 cut(s) 70, 258, 458, 658, 934, 1034
MlyI GAGTC 3 cut(s) 360, 598, 958
MroI TCCGGA 1 cut(s) 199
MroXI GAANNNNTTC 2 cut(s) 812, 1083
MseI TTAA 5 cut(s) 402, 453, 494, 579, 1074
MslI CAYNNNNRTG 2 cut(s) 279, 299
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 4 cut(s) 185, 200, 249, 309
MspR9I CCNGG 4 cut(s) 250, 309, 310, 818
MunI CAATTG 1 cut(s) 70
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 1 cut(s) 818
MwoI GCNNNNNNNGC 2 cut(s) 539, 1179
NciI CCSGG 3 cut(s) 250, 309, 310
NdeII GATC 8 cut(s) 157, 253, 271, 502, 780, 900, 1051, 1250
NlaIII CATG 7 cut(s) 284, 541, 752, 764, 848, 1066, 1257
NlaIV GGNNCC 1 cut(s) 306
NmuCI GTSAC 3 cut(s) 512, 730, 1040
NspI RCATGY 1 cut(s) 1066
PaeR7I CTCGAG 1 cut(s) 984
PagI TCATGA 1 cut(s) 1253
PctI GAATGC 1 cut(s) 5
PdmI GAANNNNTTC 2 cut(s) 812, 1083
PfeI GAWTC 4 cut(s) 524, 1132, 1141, 1226
PfoI TCCNGGA 1 cut(s) 816
PkrI GCNGC 5 cut(s) 100, 532, 919, 1092, 1218
PleI GAGTC 3 cut(s) 360, 598, 958
PpsI GAGTC 3 cut(s) 360, 598, 958
Ppu21I YACGTR 1 cut(s) 40
PshBI ATTAAT 1 cut(s) 494
Psp124BI GAGCTC 1 cut(s) 624
Psp6I CCWGG 1 cut(s) 816
PspGI CCWGG 1 cut(s) 816
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 1194
RsaI GTAC 6 cut(s) 24, 42, 108, 244, 410, 1209
RsaNI GTAC 6 cut(s) 23, 41, 107, 243, 409, 1208
RseI CAYNNNNRTG 2 cut(s) 279, 299
SacI GAGCTC 1 cut(s) 624
SaqAI TTAA 5 cut(s) 402, 453, 494, 579, 1074
SatI GCNGC 5 cut(s) 99, 531, 918, 1091, 1217
Sau3AI GATC 8 cut(s) 157, 253, 271, 502, 780, 900, 1051, 1250
Sau96I GGNCC 1 cut(s) 1194
SchI GAGTC 3 cut(s) 360, 598, 958
ScrFI CCNGG 4 cut(s) 250, 309, 310, 818
SduI GDGCHC 3 cut(s) 92, 564, 624
SfaNI GCATC 4 cut(s) 19, 303, 1133, 1247
Sfr274I CTCGAG 1 cut(s) 984
SlaI CTCGAG 1 cut(s) 984
SmaI CCCGGG 1 cut(s) 310
SmiMI CAYNNNNRTG 2 cut(s) 279, 299
SmlI CTYRAG 3 cut(s) 737, 984, 1168
SmoI CTYRAG 3 cut(s) 737, 984, 1168
SpeI ACTAGT 1 cut(s) 926
Sse9I AATT 6 cut(s) 70, 258, 458, 658, 934, 1034
SsiI CCGC 4 cut(s) 533, 917, 920, 1219
SspI AATATT 1 cut(s) 393
SspMI CTAG 5 cut(s) 143, 423, 443, 927, 1029
SstI GAGCTC 1 cut(s) 624
StyD4I CCNGG 4 cut(s) 248, 307, 308, 816
StyI CCWWGG 2 cut(s) 370, 849
TaaI ACNGT 3 cut(s) 45, 265, 646
TaiI ACGT 3 cut(s) 42, 514, 519
TaqI TCGA 6 cut(s) 343, 490, 554, 693, 903, 985
TasI AATT 6 cut(s) 70, 258, 458, 658, 934, 1034
TatI WGTACW 1 cut(s) 242
TauI GCSGC 1 cut(s) 920
TfiI GAWTC 4 cut(s) 524, 1132, 1141, 1226
Tru1I TTAA 5 cut(s) 402, 453, 494, 579, 1074
Tru9I TTAA 5 cut(s) 402, 453, 494, 579, 1074
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 3 cut(s) 512, 730, 1040
TseI GCWGC 4 cut(s) 98, 530, 1090, 1216
Tsp45I GTSAC 3 cut(s) 512, 730, 1040
TspDTI ATGAA 6 cut(s) 214, 537, 875, 966, 1023, 1218
TspGWI ACGGA 3 cut(s) 118, 284, 287
TspMI CCCGGG 1 cut(s) 308
TspRI CASTG 1 cut(s) 622
VspI ATTAAT 1 cut(s) 494
XapI RAATTY 3 cut(s) 458, 934, 1034
XbaI TCTAGA 1 cut(s) 442
XceI RCATGY 1 cut(s) 1066
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XhoI CTCGAG 1 cut(s) 984
XmaI CCCGGG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 2 cut(s) 812, 1083
XspI CTAG 5 cut(s) 143, 423, 443, 927, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.