RchiOBHm_Chr5g0048891

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
46233243 .. 46234558
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32657

Sequence Viewer

Length: 1083 bp
ATGGCTTCCTCTTCCTCGTCTTTGTCCCCATTGAAAGTCCGAATCACCAAAGAACAGTTCTACTCTTTCCACAACATTGACCGCAAGCTCTTCACCCGTCTTACATTGCATCTAGGCCGTGACCCGGGCGATTCTGCTCAGATTATGGCCTTTTGGATGTGGCTCGAGCACGGTGGTAAGGTCACCCACTTCATTCACAAAGCCCTTAACACTCTCCCCAACACCCTCCTCCACATCATGGCCGACGAGTCATGCATGGTCCTCAATGTCATTCAAAACGATGAATTTCCGATGGTCTTGGAATCAGATATCATTCCTCACGATATTCCCATTCTCCAAGGAATGACAAAAAGCGGCGTCACCCTCAGATTCTTCCATAAAAACCGCCTCAGCATTATCCGAGGACTTACCTTGTTTTTCAATGACGTGTGCTTGAGAGCCTTTGAGGACTTGTACATTACAGCTGCTCACTGCCAAAACAAGACTATAGATCCTATATCCACCGGAATAGGGTTACACCCAGAGCCGCAAAATTATGCAAGGAGGACGGTTCTAGTCAATAAGTACTACAATCCATTTCTCATTGGAGCTGCGACTTTTGACGCGCCTATGGAAACCATAGAACCTCTTCCTCCGCACCCCATGGATGGGCCTGTTGTTAACAGTAATAGTAGTGTTGATCCACTAATATGGGACCCTCGTGTGGCGGCTAAGGCGGTGTCTGTGGGGCGGTGGTGTTCGGGGGATCAAGTCGAGGAAGAAGTGTCTACAGATGATAGGACTATTTTCTTGACATTTTCTAAGGGGTATCCCATTTCTGAAAAGGAAGTGAGAGAGTTCTTTACCAGGAAATATGGGGAATTTTTTGATGCTATCCATATGCAAGAAGTACAAGCAGCAGATCAGCAGCCTTTATATGCCCGCCTTGTGGTTCGTTCTGCTTCTTTTATTCCAGTGGTGCTCGAGGGACAAAGCAAGGCCAAATTTTCTATCAACGGAAAACATGTTTGGGCAAGAAAGTACGTGAAAAAGAATATTGTGATAGGAGAACAAAGTTCACCAAAGGGTGTTTTAGCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

360

Amino Acids

40.65

Weight (kDa)

7.23

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000612)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 238
AccI GTMKAC 1 cut(s) 767
AccII CGCG 1 cut(s) 605
AciI CCGC 9 cut(s) 82, 354, 385, 527, 635, 707, 716, 730, 922
AclWI GGATC 3 cut(s) 485, 674, 753
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 3 cut(s) 284, 860, 983
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 4 cut(s) 455, 566, 891, 1022
AfiI CCNNNNNNNGG 7 cut(s) 124, 238, 510, 647, 648, 703, 928
AflIII ACRYGT 2 cut(s) 426, 1003
AgsI TTSAA 3 cut(s) 34, 275, 421
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 1 cut(s) 845
AjuI GAANNNNNNNTTGG 4 cut(s) 41, 73, 991, 1023
AluBI AGCT 4 cut(s) 88, 464, 590, 1076
AluI AGCT 4 cut(s) 88, 464, 590, 1076
Alw21I GWGCWC 2 cut(s) 171, 963
AlwI GGATC 3 cut(s) 485, 674, 753
Ama87I CYCGRG 3 cut(s) 124, 164, 962
AoxI GGCC 5 cut(s) 115, 147, 240, 650, 978
ApeKI GCWGC 4 cut(s) 464, 590, 896, 907
ApoI RAATTY 3 cut(s) 284, 860, 983
Asp700I GAANNNNTTC 1 cut(s) 627
AspLEI GCGC 1 cut(s) 607
AspS9I GGNCC 3 cut(s) 259, 650, 694
AsuC2I CCSGG 2 cut(s) 125, 126
AsuHPI GGTGA 5 cut(s) 37, 85, 175, 352, 1050
AvaI CYCGRG 3 cut(s) 124, 164, 962
AvaII GGWCC 2 cut(s) 259, 694
BauI CACGAG 1 cut(s) 699
Bbv12I GWGCWC 2 cut(s) 171, 963
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 4 cut(s) 451, 577, 908, 919
BccI CCATC 2 cut(s) 286, 641
BceAI ACGGC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 847
BciVI GTATCC 1 cut(s) 819
BcnI CCSGG 2 cut(s) 125, 126
BfaI CTAG 2 cut(s) 113, 554
BfmI CTRYAG 2 cut(s) 486, 768
BfuI GTATCC 1 cut(s) 819
BisI GCNGC 7 cut(s) 355, 465, 527, 591, 708, 897, 908
BlsI GCNGC 7 cut(s) 356, 466, 528, 592, 709, 898, 909
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 3 cut(s) 125, 126, 847
Bme18I GGWCC 2 cut(s) 259, 694
BmeT110I CYCGRG 3 cut(s) 124, 164, 962
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 3 cut(s) 259, 650, 694
BmiI GGNNCC 2 cut(s) 695, 696
BmrFI CCNGG 3 cut(s) 125, 126, 847
BmsI GCATC 2 cut(s) 118, 859
Bpu10I CCTNAGC 2 cut(s) 389, 711
BpuEI CTTGAG 1 cut(s) 454
BpuMI CCSGG 2 cut(s) 125, 126
BsaAI YACGTR 1 cut(s) 1024
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 4 cut(s) 124, 337, 400, 642
BsaWI WCCGGW 1 cut(s) 503
Bsc4I CCNNNNNNNGG 7 cut(s) 124, 238, 510, 647, 648, 703, 928
Bse1I ACTGG 1 cut(s) 953
Bse3DI GCAATG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 847
BseDI CCNNGG 4 cut(s) 124, 337, 400, 642
BseGI GGATG 2 cut(s) 162, 652
BseLI CCNNNNNNNGG 7 cut(s) 124, 238, 510, 647, 648, 703, 928
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 3 cut(s) 152, 379, 403
BseNI ACTGG 1 cut(s) 953
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 4 cut(s) 451, 577, 908, 919
Bsh1236I CGCG 1 cut(s) 605
BshFI GGCC 5 cut(s) 117, 149, 242, 652, 980
BsiHKAI GWGCWC 2 cut(s) 171, 963
BsiHKCI CYCGRG 3 cut(s) 124, 164, 962
BsiSI CCGG 2 cut(s) 125, 504
BslFI GGGAC 3 cut(s) 10, 707, 981
BslI CCNNNNNNNGG 7 cut(s) 124, 238, 510, 647, 648, 703, 928
BsmFI GGGAC 3 cut(s) 10, 707, 981
BsnI GGCC 5 cut(s) 117, 149, 242, 652, 980
BsoBI CYCGRG 3 cut(s) 124, 164, 962
Bsp1286I GDGCHC 2 cut(s) 171, 963
Bsp1407I TGTACA 1 cut(s) 453
Bsp143I GATC 4 cut(s) 490, 679, 745, 901
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 9 cut(s) 82, 354, 385, 527, 635, 707, 716, 730, 922
BspANI GGCC 5 cut(s) 117, 149, 242, 652, 980
BspCNI CTCAG 3 cut(s) 151, 378, 402
BspFNI CGCG 1 cut(s) 605
BspLI GGNNCC 2 cut(s) 695, 696
BspPI GGATC 3 cut(s) 485, 674, 753
BspQI GCTCTTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 453
BsrI ACTGG 1 cut(s) 953
BssECI CCNNGG 4 cut(s) 124, 337, 400, 642
BssMI GATC 4 cut(s) 490, 679, 745, 901
BssNI GRCGYC 1 cut(s) 357
BssSI CACGAG 1 cut(s) 699
BssT1I CCWWGG 2 cut(s) 337, 642
Bst2BI CACGAG 1 cut(s) 699
Bst2UI CCWGG 1 cut(s) 847
Bst4CI ACNGT 4 cut(s) 57, 173, 550, 665
Bst6I CTCTTC 3 cut(s) 16, 95, 633
BstACI GRCGYC 1 cut(s) 357
BstAUI TGTACA 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 1024
BstC8I GCNNGC 2 cut(s) 86, 922
BstDEI CTNAG 5 cut(s) 138, 365, 389, 711, 801
BstDSI CCRYGG 1 cut(s) 642
BstEII GGTNACC 1 cut(s) 181
BstF5I GGATG 2 cut(s) 162, 652
BstFNI CGCG 1 cut(s) 605
BstHHI GCGC 1 cut(s) 607
BstKTI GATC 4 cut(s) 493, 682, 748, 904
BstMBI GATC 4 cut(s) 490, 679, 745, 901
BstMWI GCNNNNNNNGC 1 cut(s) 713
BstNI CCWGG 1 cut(s) 847
BstNSI RCATGY 1 cut(s) 1007
BstPI GGTNACC 1 cut(s) 181
BstSCI CCNGG 3 cut(s) 123, 124, 845
BstSFI CTRYAG 2 cut(s) 486, 768
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 4 cut(s) 451, 577, 908, 919
BstX2I RGATCY 1 cut(s) 490
BstXI CCANNNNNNTGG 1 cut(s) 690
BstYI RGATCY 1 cut(s) 490
BsuI GTATCC 1 cut(s) 819
BsuRI GGCC 5 cut(s) 117, 149, 242, 652, 980
BtgI CCRYGG 1 cut(s) 642
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 2 cut(s) 162, 652
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 2 cut(s) 469, 960
Cac8I GCNNGC 2 cut(s) 86, 922
CfoI GCGC 1 cut(s) 607
Cfr13I GGNCC 3 cut(s) 259, 650, 694
Cfr9I CCCGGG 1 cut(s) 124
CseI GACGC 2 cut(s) 346, 611
Csp6I GTAC 4 cut(s) 454, 565, 890, 1021
CviAII CATG 5 cut(s) 238, 252, 256, 643, 1004
CviQI GTAC 4 cut(s) 454, 565, 890, 1021
DdeI CTNAG 5 cut(s) 138, 365, 389, 711, 801
DpnI GATC 4 cut(s) 492, 681, 747, 903
DpnII GATC 4 cut(s) 490, 679, 745, 901
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 3 cut(s) 16, 95, 633
EarI CTCTTC 3 cut(s) 16, 95, 633
Eco130I CCWWGG 2 cut(s) 337, 642
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 259, 694
Eco88I CYCGRG 3 cut(s) 124, 164, 962
Eco91I GGTNACC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 694
EcoO65I GGTNACC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 845
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 2 cut(s) 337, 642
EcoT22I ATGCAT 1 cut(s) 257
ErhI CCWWGG 2 cut(s) 337, 642
FaeI CATG 5 cut(s) 241, 255, 259, 646, 1007
FaqI GGGAC 3 cut(s) 10, 707, 981
FatI CATG 5 cut(s) 237, 251, 255, 642, 1003
FauI CCCGC 1 cut(s) 929
FauNDI CATATG 1 cut(s) 879
FblI GTMKAC 1 cut(s) 767
Fnu4HI GCNGC 7 cut(s) 355, 465, 527, 591, 708, 897, 908
FokI GGATG 2 cut(s) 169, 659
Fsp4HI GCNGC 7 cut(s) 355, 465, 527, 591, 708, 897, 908
FspBI CTAG 2 cut(s) 113, 554
GlaI GCGC 1 cut(s) 606
GluI GCNGC 7 cut(s) 355, 465, 527, 591, 708, 897, 908
HaeIII GGCC 5 cut(s) 117, 149, 242, 652, 980
HapII CCGG 2 cut(s) 125, 504
HgaI GACGC 2 cut(s) 346, 611
HhaI GCGC 1 cut(s) 607
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 5 cut(s) 241, 255, 259, 646, 1007
Hin6I GCGC 1 cut(s) 605
HinP1I GCGC 1 cut(s) 605
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HinfI GANTC 5 cut(s) 42, 131, 248, 302, 369
HpaI GTTAAC 1 cut(s) 661
HpaII CCGG 2 cut(s) 125, 504
HphI GGTGA 5 cut(s) 37, 85, 175, 352, 1050
Hpy166II GTNNAC 3 cut(s) 661, 768, 1058
Hpy188I TCNGA 7 cut(s) 41, 141, 291, 307, 368, 401, 820
Hpy188III TCNNGA 2 cut(s) 320, 790
Hpy8I GTNNAC 3 cut(s) 661, 768, 1058
Hpy99I CGWCG 1 cut(s) 248
HpyCH4III ACNGT 4 cut(s) 57, 173, 550, 665
HpyCH4IV ACGT 2 cut(s) 426, 1023
HpyCH4V TGCA 4 cut(s) 109, 255, 539, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 713
HpyF3I CTNAG 5 cut(s) 138, 365, 389, 711, 801
HpySE526I ACGT 2 cut(s) 426, 1023
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 5 cut(s) 241, 255, 259, 646, 1007
HspAI GCGC 1 cut(s) 605
KflI GGGWCCC 1 cut(s) 694
KspAI GTTAAC 1 cut(s) 661
Kzo9I GATC 4 cut(s) 490, 679, 745, 901
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 587
LpnPI CCDG 7 cut(s) 138, 517, 534, 666, 832, 859, 966
Lsp1109I GCAGC 4 cut(s) 451, 577, 908, 919
LweI GCATC 2 cut(s) 118, 859
MaeI CTAG 2 cut(s) 113, 554
MaeII ACGT 2 cut(s) 426, 1023
MaeIII GTNAC 4 cut(s) 119, 181, 358, 513
MalI GATC 4 cut(s) 492, 681, 747, 903
MboI GATC 4 cut(s) 490, 679, 745, 901
MboII GAAGA 5 cut(s) 3, 82, 364, 620, 770
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 2 cut(s) 171, 963
MluCI AATT 4 cut(s) 284, 532, 860, 983
MlyI GAGTC 1 cut(s) 257
Mph1103I ATGCAT 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 627
MseI TTAA 2 cut(s) 207, 660
MslI CAYNNNNRTG 1 cut(s) 688
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 2 cut(s) 125, 504
MspR9I CCNGG 3 cut(s) 125, 126, 847
MvaI CCWGG 1 cut(s) 847
MvnI CGCG 1 cut(s) 605
MwoI GCNNNNNNNGC 1 cut(s) 713
NciI CCSGG 2 cut(s) 125, 126
NcoI CCATGG 1 cut(s) 642
NdeI CATATG 1 cut(s) 879
NdeII GATC 4 cut(s) 490, 679, 745, 901
NlaIII CATG 5 cut(s) 241, 255, 259, 646, 1007
NlaIV GGNNCC 2 cut(s) 695, 696
NmuCI GTSAC 3 cut(s) 119, 181, 358
NsiI ATGCAT 1 cut(s) 257
NspI RCATGY 1 cut(s) 1007
PaeR7I CTCGAG 2 cut(s) 164, 962
PciI ACATGT 1 cut(s) 1003
PciSI GCTCTTC 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 4 cut(s) 42, 131, 302, 369
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 7 cut(s) 356, 466, 528, 592, 709, 898, 909
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
Ppu21I YACGTR 1 cut(s) 1024
PpuMI RGGWCCY 1 cut(s) 694
PscI ACATGT 1 cut(s) 1003
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 1 cut(s) 845
PspEI GGTNACC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 845
PspN4I GGNNCC 2 cut(s) 695, 696
PspPI GGNCC 3 cut(s) 259, 650, 694
PspPPI RGGWCCY 1 cut(s) 694
PspXI VCTCGAGB 2 cut(s) 164, 962
PsuI RGATCY 1 cut(s) 490
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 4 cut(s) 455, 566, 891, 1022
RsaNI GTAC 4 cut(s) 454, 565, 890, 1021
RseI CAYNNNNRTG 1 cut(s) 688
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 207, 660
SatI GCNGC 7 cut(s) 355, 465, 527, 591, 708, 897, 908
Sau3AI GATC 4 cut(s) 490, 679, 745, 901
Sau96I GGNCC 3 cut(s) 259, 650, 694
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 3 cut(s) 125, 126, 847
SduI GDGCHC 2 cut(s) 171, 963
SetI ASST 9 cut(s) 90, 183, 413, 429, 466, 592, 628, 1026, 1078
SfaNI GCATC 2 cut(s) 118, 859
SfcI CTRYAG 2 cut(s) 486, 768
Sfr274I CTCGAG 2 cut(s) 164, 962
SinI GGWCC 2 cut(s) 259, 694
SlaI CTCGAG 2 cut(s) 164, 962
SmaI CCCGGG 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 688
SmlI CTYRAG 3 cut(s) 164, 433, 962
SmoI CTYRAG 3 cut(s) 164, 433, 962
Sse9I AATT 4 cut(s) 284, 532, 860, 983
SsiI CCGC 9 cut(s) 82, 354, 385, 527, 635, 707, 716, 730, 922
SspI AATATT 1 cut(s) 1036
SspMI CTAG 2 cut(s) 113, 554
StyD4I CCNGG 3 cut(s) 123, 124, 845
StyI CCWWGG 2 cut(s) 337, 642
TaaI ACNGT 4 cut(s) 57, 173, 550, 665
TaiI ACGT 2 cut(s) 429, 1026
TaqI TCGA 3 cut(s) 165, 753, 963
TasI AATT 4 cut(s) 284, 532, 860, 983
TatI WGTACW 3 cut(s) 453, 564, 889
TauI GCSGC 3 cut(s) 357, 529, 710
TfiI GAWTC 4 cut(s) 42, 131, 302, 369
Tru1I TTAA 2 cut(s) 207, 660
Tru9I TTAA 2 cut(s) 207, 660
TscAI CASTG 2 cut(s) 476, 960
TseFI GTSAC 3 cut(s) 119, 181, 358
TseI GCWGC 4 cut(s) 464, 590, 896, 907
Tsp45I GTSAC 3 cut(s) 119, 181, 358
TspDTI ATGAA 2 cut(s) 181, 297
TspGWI ACGGA 1 cut(s) 1011
TspMI CCCGGG 1 cut(s) 124
TspRI CASTG 2 cut(s) 476, 960
Van91I CCANNNNNTGG 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 259, 694
XapI RAATTY 3 cut(s) 284, 860, 983
XceI RCATGY 1 cut(s) 1007
XhoI CTCGAG 2 cut(s) 164, 962
XmaI CCCGGG 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 767
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 2 cut(s) 113, 554
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.