Rw5G030320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000612
Physical Location & Seq
Forward (+)
47987531 .. 47988600
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030320.1

Sequence Viewer

Length: 900 bp
ATGGCCGACGAGTCATGCATGGTCCTCAATGTCGTTCAAAACGATGAATTTCCGATGGTCTTGGAATCAGATATCATTCCTCACGATATTCCCATTCTCCAAGGAATGACCAAAAGAGGCGTCACCCTCAGATTCTTCCATAAAAACCGCCTCAGCATCATCCGAGGACTTGCCTTGTTTTTCAATGACGTGTGCTTGAGAGCCTTTGAGGAATTGTACATTACAGCTGCTCACTGCCAAAACAAGACTATAGATCCTATATCCACCGGAATAGGGTTACACCCAGAGCCGCAAAATTATAACCTCTTCCTCCGCACCCCATGGATGGGGGATGTTGTTAACAGTAATAGTAGTGTTGATCCACTAATATGGGACCCTCGTGTGGCGGCTAAGGCGGTGTCTGTGGGGTCTGCTCAGTTCCCTTCGGAGAATTTGCACCATGGATTTGTTGATCCCTATGATCTTAGCACTCAGCGCGATTTCTTGAATAATGAAATGGCAGATATGCTTAGTCGTTTGCATTTGCATGACGATGATGGTGACGGTGGTGATATAGGCCGTGGTGTTCGGGGGGATCAAGTCGAGGAAGAAGTGTCTGCAGATGATAGGACTATTTTCTTGACATTTTCTAAGGGGTATCCCATTTCTGAAAAGGAAGTGAGAGAGTTCTTTACCAGGAAATATGGGAACTTTTTTGATGCTATCCATATGCAAGAAGTACAAGTAGCGGATCAGCAGCCTTTATATGCCCGCCTTGTGGTTCGTTCCGCTTCTTTTATTCCAGTGGTGCTCGAGGGACAAAGCAAGGCCAAATTTTCTATCAATGGAAAACATGTTTGGGCAAGAAAGTACGTGAAAAAGAATATTATCACGAACAAAGTTCACCAAAGGGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.98

Weight (kDa)

5.88

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AccII CGCG 1 cut(s) 477
AciI CCGC 8 cut(s) 148, 290, 313, 386, 395, 728, 751, 768
AclWI GGATC 5 cut(s) 248, 353, 446, 582, 738
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 47, 430, 812
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 3 cut(s) 218, 720, 851
AfiI CCNNNNNNNGG 5 cut(s) 273, 325, 326, 382, 757
AflIII ACRYGT 2 cut(s) 189, 832
AgsI TTSAA 3 cut(s) 38, 184, 487
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 674
AjuI GAANNNNNNNTTGG 2 cut(s) 820, 852
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw21I GWGCWC 1 cut(s) 792
AlwI GGATC 5 cut(s) 248, 353, 446, 582, 738
Ama87I CYCGRG 1 cut(s) 791
AoxI GGCC 3 cut(s) 3, 556, 807
ApeKI GCWGC 2 cut(s) 227, 736
ApoI RAATTY 3 cut(s) 47, 430, 812
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AspLEI GCGC 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 22, 373
AsuHPI GGTGA 4 cut(s) 115, 551, 560, 875
AvaI CYCGRG 1 cut(s) 791
AvaII GGWCC 2 cut(s) 22, 373
BauI CACGAG 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 792
BbvCI CCTCAGC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 214, 748
BccI CCATC 3 cut(s) 49, 319, 530
BceAI ACGGC 1 cut(s) 543
BciT130I CCWGG 1 cut(s) 676
BciVI GTATCC 1 cut(s) 648
BfmI CTRYAG 2 cut(s) 249, 597
BfuI GTATCC 1 cut(s) 648
BisI GCNGC 4 cut(s) 228, 290, 387, 737
BlsI GCNGC 4 cut(s) 229, 291, 388, 738
Bme1390I CCNGG 1 cut(s) 676
Bme18I GGWCC 2 cut(s) 22, 373
BmeT110I CYCGRG 1 cut(s) 791
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 22, 373
BmiI GGNNCC 2 cut(s) 374, 375
BmrFI CCNGG 1 cut(s) 676
BmsI GCATC 2 cut(s) 165, 688
Bpu10I CCTNAGC 2 cut(s) 152, 390
BpuEI CTTGAG 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 853
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 5 cut(s) 100, 163, 320, 439, 559
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 5 cut(s) 273, 325, 326, 382, 757
Bse1I ACTGG 1 cut(s) 782
BseBI CCWGG 1 cut(s) 676
BseDI CCNNGG 5 cut(s) 100, 163, 320, 439, 559
BseGI GGATG 3 cut(s) 159, 330, 337
BseLI CCNNNNNNNGG 5 cut(s) 273, 325, 326, 382, 757
BseMII CTCAG 4 cut(s) 142, 166, 428, 485
BseNI ACTGG 1 cut(s) 782
BseXI GCAGC 2 cut(s) 214, 748
Bsh1236I CGCG 1 cut(s) 477
BshFI GGCC 3 cut(s) 5, 558, 809
BsiHKAI GWGCWC 1 cut(s) 792
BsiHKCI CYCGRG 1 cut(s) 791
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 2 cut(s) 386, 810
BslI CCNNNNNNNGG 5 cut(s) 273, 325, 326, 382, 757
BsmFI GGGAC 2 cut(s) 386, 810
BsnI GGCC 3 cut(s) 5, 558, 809
BsoBI CYCGRG 1 cut(s) 791
Bsp1286I GDGCHC 1 cut(s) 792
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 6 cut(s) 253, 358, 451, 460, 574, 730
Bsp19I CCATGG 2 cut(s) 320, 439
BspACI CCGC 8 cut(s) 148, 290, 313, 386, 395, 728, 751, 768
BspANI GGCC 3 cut(s) 5, 558, 809
BspCNI CTCAG 4 cut(s) 141, 165, 427, 484
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 2 cut(s) 374, 375
BspMAI CTGCAG 1 cut(s) 601
BspPI GGATC 5 cut(s) 248, 353, 446, 582, 738
BsrGI TGTACA 1 cut(s) 216
BsrI ACTGG 1 cut(s) 782
BssECI CCNNGG 5 cut(s) 100, 163, 320, 439, 559
BssMI GATC 6 cut(s) 253, 358, 451, 460, 574, 730
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 378
BssT1I CCWWGG 3 cut(s) 100, 320, 439
Bst2BI CACGAG 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 676
Bst4CI ACNGT 2 cut(s) 344, 545
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 853
BstC8I GCNNGC 1 cut(s) 751
BstDEI CTNAG 8 cut(s) 128, 152, 390, 414, 464, 471, 509, 630
BstDSI CCRYGG 3 cut(s) 320, 439, 559
BstF5I GGATG 3 cut(s) 159, 330, 337
BstFNI CGCG 1 cut(s) 477
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 6 cut(s) 256, 361, 454, 463, 577, 733
BstMBI GATC 6 cut(s) 253, 358, 451, 460, 574, 730
BstMWI GCNNNNNNNGC 2 cut(s) 392, 474
BstNI CCWGG 1 cut(s) 676
BstNSI RCATGY 1 cut(s) 836
BstSCI CCNGG 1 cut(s) 674
BstSFI CTRYAG 2 cut(s) 249, 597
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 2 cut(s) 214, 748
BstX2I RGATCY 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 369
BstYI RGATCY 1 cut(s) 253
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 3 cut(s) 5, 558, 809
BtgI CCRYGG 3 cut(s) 320, 439, 559
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 3 cut(s) 159, 330, 337
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 232, 789
Cac8I GCNNGC 1 cut(s) 751
CfoI GCGC 1 cut(s) 477
Cfr13I GGNCC 2 cut(s) 22, 373
CseI GACGC 1 cut(s) 109
Csp6I GTAC 3 cut(s) 217, 719, 850
CviAII CATG 6 cut(s) 15, 19, 321, 440, 527, 833
CviJI RGCY 8 cut(s) 5, 203, 227, 289, 389, 558, 739, 809
CviKI_1 RGCY 8 cut(s) 5, 203, 227, 289, 389, 558, 739, 809
CviQI GTAC 3 cut(s) 217, 719, 850
DdeI CTNAG 8 cut(s) 128, 152, 390, 414, 464, 471, 509, 630
DpnI GATC 6 cut(s) 255, 360, 453, 462, 576, 732
DpnII GATC 6 cut(s) 253, 358, 451, 460, 574, 730
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 3 cut(s) 100, 320, 439
Eco32I GATATC 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 22, 373
Eco88I CYCGRG 1 cut(s) 791
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 674
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 3 cut(s) 100, 320, 439
EcoT22I ATGCAT 1 cut(s) 20
ErhI CCWWGG 3 cut(s) 100, 320, 439
FaeI CATG 6 cut(s) 18, 22, 324, 443, 530, 836
FaqI GGGAC 2 cut(s) 386, 810
FatI CATG 6 cut(s) 14, 18, 320, 439, 526, 832
FauI CCCGC 1 cut(s) 758
FauNDI CATATG 1 cut(s) 708
Fnu4HI GCNGC 4 cut(s) 228, 290, 387, 737
FokI GGATG 3 cut(s) 146, 337, 344
Fsp4HI GCNGC 4 cut(s) 228, 290, 387, 737
GlaI GCGC 1 cut(s) 476
GluI GCNGC 4 cut(s) 228, 290, 387, 737
HaeIII GGCC 3 cut(s) 5, 558, 809
HapII CCGG 1 cut(s) 267
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 477
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 6 cut(s) 18, 22, 324, 443, 530, 836
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 3 cut(s) 11, 65, 132
HpaI GTTAAC 1 cut(s) 340
HpaII CCGG 1 cut(s) 267
HphI GGTGA 4 cut(s) 115, 551, 560, 875
Hpy166II GTNNAC 2 cut(s) 340, 883
Hpy188I TCNGA 6 cut(s) 54, 70, 131, 164, 427, 649
Hpy188III TCNNGA 4 cut(s) 83, 484, 619, 871
Hpy8I GTNNAC 2 cut(s) 340, 883
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 432
HpyCH4III ACNGT 2 cut(s) 344, 545
HpyCH4IV ACGT 2 cut(s) 189, 852
HpyCH4V TGCA 6 cut(s) 18, 436, 520, 526, 599, 712
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 474
HpyF3I CTNAG 8 cut(s) 128, 152, 390, 414, 464, 471, 509, 630
HpySE526I ACGT 2 cut(s) 189, 852
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 6 cut(s) 18, 22, 324, 443, 530, 836
HspAI GCGC 1 cut(s) 475
KflI GGGWCCC 1 cut(s) 373
KspAI GTTAAC 1 cut(s) 340
Kzo9I GATC 6 cut(s) 253, 358, 451, 460, 574, 730
LpnPI CCDG 5 cut(s) 280, 297, 661, 688, 795
Lsp1109I GCAGC 2 cut(s) 214, 748
LweI GCATC 2 cut(s) 165, 688
MaeII ACGT 2 cut(s) 189, 852
MaeIII GTNAC 3 cut(s) 121, 276, 539
MalI GATC 6 cut(s) 255, 360, 453, 462, 576, 732
MboI GATC 6 cut(s) 253, 358, 451, 460, 574, 730
MboII GAAGA 3 cut(s) 127, 298, 599
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 792
MluCI AATT 5 cut(s) 47, 212, 295, 430, 812
MlyI GAGTC 1 cut(s) 20
Mph1103I ATGCAT 1 cut(s) 20
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 3 cut(s) 367, 525, 531
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 676
MvaI CCWGG 1 cut(s) 676
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 2 cut(s) 392, 474
NcoI CCATGG 2 cut(s) 320, 439
NdeI CATATG 1 cut(s) 708
NdeII GATC 6 cut(s) 253, 358, 451, 460, 574, 730
NlaIII CATG 6 cut(s) 18, 22, 324, 443, 530, 836
NlaIV GGNNCC 2 cut(s) 374, 375
NmuCI GTSAC 2 cut(s) 121, 539
NsiI ATGCAT 1 cut(s) 20
NspI RCATGY 1 cut(s) 836
PaeR7I CTCGAG 1 cut(s) 791
PciI ACATGT 1 cut(s) 832
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 2 cut(s) 65, 132
PkrI GCNGC 4 cut(s) 229, 291, 388, 738
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 853
PpuMI RGGWCCY 1 cut(s) 373
PscI ACATGT 1 cut(s) 832
PsiI TTATAA 1 cut(s) 300
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 674
PspGI CCWGG 1 cut(s) 674
PspN4I GGNNCC 2 cut(s) 374, 375
PspPI GGNCC 2 cut(s) 22, 373
PspPPI RGGWCCY 1 cut(s) 373
PspXI VCTCGAGB 1 cut(s) 791
PstI CTGCAG 1 cut(s) 601
PsuI RGATCY 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 3 cut(s) 218, 720, 851
RsaNI GTAC 3 cut(s) 217, 719, 850
RseI CAYNNNNRTG 3 cut(s) 367, 525, 531
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 4 cut(s) 228, 290, 387, 737
Sau3AI GATC 6 cut(s) 253, 358, 451, 460, 574, 730
Sau96I GGNCC 2 cut(s) 22, 373
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 676
SduI GDGCHC 1 cut(s) 792
SetI ASST 4 cut(s) 192, 229, 306, 855
SfaNI GCATC 2 cut(s) 165, 688
SfcI CTRYAG 2 cut(s) 249, 597
Sfr274I CTCGAG 1 cut(s) 791
SinI GGWCC 2 cut(s) 22, 373
SlaI CTCGAG 1 cut(s) 791
SmiMI CAYNNNNRTG 3 cut(s) 367, 525, 531
SmlI CTYRAG 2 cut(s) 196, 791
SmoI CTYRAG 2 cut(s) 196, 791
Sse9I AATT 5 cut(s) 47, 212, 295, 430, 812
SsiI CCGC 8 cut(s) 148, 290, 313, 386, 395, 728, 751, 768
SspI AATATT 1 cut(s) 865
StyD4I CCNGG 1 cut(s) 674
StyI CCWWGG 3 cut(s) 100, 320, 439
TaaI ACNGT 2 cut(s) 344, 545
TaiI ACGT 2 cut(s) 192, 855
TaqI TCGA 2 cut(s) 582, 792
TasI AATT 5 cut(s) 47, 212, 295, 430, 812
TatI WGTACW 2 cut(s) 216, 718
TauI GCSGC 2 cut(s) 292, 389
TfiI GAWTC 2 cut(s) 65, 132
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 2 cut(s) 239, 789
TseFI GTSAC 2 cut(s) 121, 539
TseI GCWGC 2 cut(s) 227, 736
Tsp45I GTSAC 2 cut(s) 121, 539
TspDTI ATGAA 2 cut(s) 60, 507
TspRI CASTG 2 cut(s) 239, 789
VpaK11BI GGWCC 2 cut(s) 22, 373
XapI RAATTY 3 cut(s) 47, 430, 812
XceI RCATGY 1 cut(s) 836
XhoI CTCGAG 1 cut(s) 791
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.