Rroxscaffold_4G00292480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000612
Physical Location & Seq
Reverse (-)
12779844 .. 12780846
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00292480.1

Sequence Viewer

Length: 858 bp
ATGGCTTCATCTTTCTCCTCCTCATCCTCATTCGAAGTCCGAGTTACCAAAAAGCAGTACTACTCCTTCCACAACATCCACCGTAAACTTTTTACCCGTCTCACCTTGAATCTCGACAGTAACTCAGGCGAAACGACCAGTGATCTTGAATCTGACACCATCCCTCATGCTATTCCTATCCTTCAAGCAATAACCAAGTGCGATGTTACCCTCAGATTCTTCCATAATAACCGCCTCGGCATCATCCAAGGAGTCACCTTGTCCTTCAATGAAGTGTGTTTGAGAGCCTTTGAGGACTTGTATATTAATGTTGCTCACTACCAGAACAAGATAGTAGATCATATAGCCACCAGAATAAGGCTACACCTGGAGTCGCAGAATTATGTTAGGAGGTCGGTTCTAGTCAATAAGTACTACAATCCATTCCTTGTTAGAGCTGCGAGTTTTGATGCCCCTATGAAAATCATCGAACCTCTTCCTCCACACCCCATGGATGGCATTGTTGTTAACAATAATAGTCATATTAAGCCATTAATGTGGAACCCTCGCGTGGCTGCTGTAACGACAACTGTGTCTTTAGGGCCGGCTCATCTGCCTCATCTGGAGTTTTTGCACTGTGGTTTTGTTGATCCTTATGATCTTGGGGCTCAACGTGATATTTTGGATAACGAAATGGCATATATGCTGAGTCGCTTGCTTGTGCATGATGATCATAGAGATGGAGGTTATATAATTGGTGGTGGTCGGTGGAATCAAGTTAAGGAAGAATTGGCTGCGGATGATAGGACTATTTTCTTGACATTTTCTAAAGGGTACCCCATTTTTGAAAAGGAAGTGAGAAAGTTCTTCACAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

285

Amino Acids

32.69

Weight (kDa)

7.82

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 571
Acc65I GGTACC 1 cut(s) 813
AccB1I GGYRCC 1 cut(s) 813
AccII CGCG 1 cut(s) 549
AciI CCGC 2 cut(s) 232, 776
AclWI GGATC 1 cut(s) 623
AfaI GTAC 3 cut(s) 59, 413, 815
AfiI CCNNNNNNNGG 3 cut(s) 357, 494, 550
AgsI TTSAA 5 cut(s) 109, 149, 185, 268, 827
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 1 cut(s) 623
AoxI GGCC 1 cut(s) 581
ApeKI GCWGC 3 cut(s) 437, 554, 773
AseI ATTAAT 2 cut(s) 306, 533
Asp700I GAANNNNTTC 1 cut(s) 474
Asp718I GGTACC 1 cut(s) 813
AspS9I GGNCC 1 cut(s) 581
AsuHPI GGTGA 2 cut(s) 94, 247
AsuII TTCGAA 1 cut(s) 33
BanI GGYRCC 1 cut(s) 813
BanII GRGCYC 1 cut(s) 649
BarI GAAGNNNNNNTAC 2 cut(s) 50, 82
BbvI GCAGC 3 cut(s) 424, 541, 760
BccI CCATC 3 cut(s) 167, 488, 713
BciT130I CCWGG 1 cut(s) 368
BclI TGATCA 1 cut(s) 709
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 401
BisI GCNGC 3 cut(s) 438, 555, 774
BlsI GCNGC 3 cut(s) 439, 556, 775
BmcAI AGTACT 2 cut(s) 59, 413
Bme1390I CCNGG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 2 cut(s) 542, 815
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 249, 439
BpmI CTGGAG 2 cut(s) 389, 623
Bpu14I TTCGAA 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 235, 247, 489
Bsc4I CCNNNNNNNGG 3 cut(s) 357, 494, 550
Bse118I RCCGGY 1 cut(s) 583
Bse1I ACTGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 3 cut(s) 235, 247, 489
BseGI GGATG 6 cut(s) 23, 75, 159, 243, 499, 784
BseLI CCNNNNNNNGG 3 cut(s) 357, 494, 550
BseMII CTCAG 3 cut(s) 138, 226, 677
BseNI ACTGG 1 cut(s) 138
BseRI GAGGAG 2 cut(s) 7, 10
BseXI GCAGC 3 cut(s) 424, 541, 760
Bsh1236I CGCG 1 cut(s) 549
BshFI GGCC 1 cut(s) 583
BshNI GGYRCC 1 cut(s) 813
BsiSI CCGG 1 cut(s) 584
BslI CCNNNNNNNGG 3 cut(s) 357, 494, 550
BsmAI GTCTC 1 cut(s) 104
BsmBI CGTCTC 1 cut(s) 104
BsnI GGCC 1 cut(s) 583
Bsp119I TTCGAA 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 649
Bsp143I GATC 5 cut(s) 142, 337, 628, 637, 709
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 2 cut(s) 232, 776
BspANI GGCC 1 cut(s) 583
BspCNI CTCAG 3 cut(s) 137, 225, 678
BspFNI CGCG 1 cut(s) 549
BspLI GGNNCC 2 cut(s) 542, 815
BspPI GGATC 1 cut(s) 623
BspT104I TTCGAA 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 813
BsrFI RCCGGY 1 cut(s) 583
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 583
BssECI CCNNGG 3 cut(s) 235, 247, 489
BssMI GATC 5 cut(s) 142, 337, 628, 637, 709
BssT1I CCWWGG 2 cut(s) 247, 489
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 4 cut(s) 83, 119, 571, 617
Bst6I CTCTTC 1 cut(s) 480
BstBI TTCGAA 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 585, 695
BstDEI CTNAG 3 cut(s) 124, 212, 686
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 6 cut(s) 23, 75, 159, 243, 499, 784
BstFNI CGCG 1 cut(s) 549
BstKTI GATC 5 cut(s) 145, 340, 631, 640, 712
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 5 cut(s) 142, 337, 628, 637, 709
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstUI CGCG 1 cut(s) 549
BstV1I GCAGC 3 cut(s) 424, 541, 760
BstXI CCANNNNNNTGG 1 cut(s) 537
BsuRI GGCC 1 cut(s) 583
BtgI CCRYGG 1 cut(s) 489
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 6 cut(s) 23, 75, 159, 243, 499, 784
BtsIMutI CAGTG 2 cut(s) 145, 613
Cac8I GCNNGC 2 cut(s) 585, 695
Cfr10I RCCGGY 1 cut(s) 583
Cfr13I GGNCC 1 cut(s) 581
Csp6I GTAC 3 cut(s) 58, 412, 814
CviAII CATG 3 cut(s) 167, 490, 704
CviQI GTAC 3 cut(s) 58, 412, 814
DdeI CTNAG 3 cut(s) 124, 212, 686
DpnI GATC 5 cut(s) 144, 339, 630, 639, 711
DpnII GATC 5 cut(s) 142, 337, 628, 637, 709
DrdI GACNNNNNNGTC 1 cut(s) 571
DseDI GACNNNNNNGTC 1 cut(s) 571
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 247, 489
Eco24I GRGCYC 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 2 cut(s) 247, 489
EcoT38I GRGCYC 1 cut(s) 649
ErhI CCWWGG 2 cut(s) 247, 489
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 3 cut(s) 170, 493, 707
FatI CATG 3 cut(s) 166, 489, 703
FbaI TGATCA 1 cut(s) 709
Fnu4HI GCNGC 3 cut(s) 438, 555, 774
FokI GGATG 6 cut(s) 10, 62, 146, 230, 506, 791
FriOI GRGCYC 1 cut(s) 649
Fsp4HI GCNGC 3 cut(s) 438, 555, 774
FspBI CTAG 1 cut(s) 401
GluI GCNGC 3 cut(s) 438, 555, 774
GsuI CTGGAG 2 cut(s) 389, 623
HaeIII GGCC 1 cut(s) 583
HapII CCGG 1 cut(s) 584
Hin1II CATG 3 cut(s) 170, 493, 707
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 7 cut(s) 109, 149, 216, 252, 371, 688, 751
HpaI GTTAAC 1 cut(s) 508
HpaII CCGG 1 cut(s) 584
HphI GGTGA 2 cut(s) 94, 247
Hpy166II GTNNAC 2 cut(s) 86, 508
Hpy188I TCNGA 3 cut(s) 41, 154, 215
Hpy188III TCNNGA 4 cut(s) 113, 146, 602, 796
Hpy8I GTNNAC 2 cut(s) 86, 508
HpyAV CCTTC 3 cut(s) 76, 191, 274
HpyCH4III ACNGT 4 cut(s) 83, 119, 571, 617
HpyCH4IV ACGT 1 cut(s) 652
HpyCH4V TGCA 2 cut(s) 613, 703
HpyF3I CTNAG 3 cut(s) 124, 212, 686
HpySE526I ACGT 1 cut(s) 652
Hsp92II CATG 3 cut(s) 170, 493, 707
KpnI GGTACC 1 cut(s) 817
KroI GCCGGC 1 cut(s) 583
KroNI GCCGGC 1 cut(s) 585
Ksp22I TGATCA 1 cut(s) 709
KspAI GTTAAC 1 cut(s) 508
Kzo9I GATC 5 cut(s) 142, 337, 628, 637, 709
LpnPI CCDG 8 cut(s) 111, 151, 335, 353, 364, 380, 587, 597
Lsp1109I GCAGC 3 cut(s) 424, 541, 760
LweI GCATC 2 cut(s) 249, 439
MaeI CTAG 1 cut(s) 401
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 5 cut(s) 43, 119, 205, 253, 559
MalI GATC 5 cut(s) 144, 339, 630, 639, 711
MboI GATC 5 cut(s) 142, 337, 628, 637, 709
MboII GAAGA 4 cut(s) 211, 467, 776, 838
MhlI GDGCHC 1 cut(s) 649
MluCI AATT 3 cut(s) 379, 732, 767
MlyI GAGTC 3 cut(s) 261, 380, 697
MroNI GCCGGC 1 cut(s) 583
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 5 cut(s) 306, 507, 525, 533, 759
MslI CAYNNNNRTG 2 cut(s) 535, 717
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MvnI CGCG 1 cut(s) 549
NaeI GCCGGC 1 cut(s) 585
NcoI CCATGG 1 cut(s) 489
NdeII GATC 5 cut(s) 142, 337, 628, 637, 709
NgoMIV GCCGGC 1 cut(s) 583
NlaIII CATG 3 cut(s) 170, 493, 707
NlaIV GGNNCC 2 cut(s) 542, 815
NmeAIII GCCGAG 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 253
NspV TTCGAA 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 585
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 4 cut(s) 109, 149, 216, 751
PkrI GCNGC 3 cut(s) 439, 556, 775
PleI GAGTC 3 cut(s) 260, 379, 696
PpsI GAGTC 3 cut(s) 260, 379, 696
PshBI ATTAAT 2 cut(s) 306, 533
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 542, 815
PspPI GGNCC 1 cut(s) 581
RsaI GTAC 3 cut(s) 59, 413, 815
RsaNI GTAC 3 cut(s) 58, 412, 814
RseI CAYNNNNRTG 2 cut(s) 535, 717
SaqAI TTAA 5 cut(s) 306, 507, 525, 533, 759
SatI GCNGC 3 cut(s) 438, 555, 774
Sau3AI GATC 5 cut(s) 142, 337, 628, 637, 709
Sau96I GGNCC 1 cut(s) 581
ScaI AGTACT 2 cut(s) 59, 413
SchI GAGTC 3 cut(s) 261, 380, 697
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 1 cut(s) 649
SetI ASST 9 cut(s) 107, 260, 369, 395, 439, 475, 655, 727, 857
SfaNI GCATC 2 cut(s) 249, 439
SfuI TTCGAA 1 cut(s) 33
SmiMI CAYNNNNRTG 2 cut(s) 535, 717
Sse9I AATT 3 cut(s) 379, 732, 767
SsiI CCGC 2 cut(s) 232, 776
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 2 cut(s) 247, 489
TaaI ACNGT 4 cut(s) 83, 119, 571, 617
TaiI ACGT 1 cut(s) 655
TaqI TCGA 3 cut(s) 33, 114, 468
TasI AATT 3 cut(s) 379, 732, 767
TatI WGTACW 2 cut(s) 57, 411
TfiI GAWTC 4 cut(s) 109, 149, 216, 751
Tru1I TTAA 5 cut(s) 306, 507, 525, 533, 759
Tru9I TTAA 5 cut(s) 306, 507, 525, 533, 759
TscAI CASTG 2 cut(s) 145, 620
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 3 cut(s) 437, 554, 773
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 285, 473
TspRI CASTG 2 cut(s) 145, 620
VspI ATTAAT 2 cut(s) 306, 533
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 1 cut(s) 401
ZrmI AGTACT 2 cut(s) 59, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.