Rh1AG322300

Amino-transferase class IV

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004670
Physical Location & Seq
Reverse (-)
55622361 .. 55626030
3670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG322300.1

Sequence Viewer

Length: 1041 bp
ATGACGACTACTCCTCTCAGGTTGTTGCTCACCAACGGCATCGTCTCCAACCCTGCCAACACTCCTCCCGTCACCACCTTCCTCGAGACCCACCCAGGGGCTTACACGACGACTCGCACTCACAACAACGCCTCGTTCGTGTTGTTTTGGGATAGGCACTTGAAAAGGCTCGCGGAGTCCGTGAGAATCCTGTACAATGCCGATCCTCAACTTCTGTTCGGACCCAACAAGACTTCGCTTCCATTACCGTCTCTTGCATCCAATTCTCTTTTGCTCCACGATCTCGTGAATGATTCGATGAAAAAAGTGCTGCCAATTGCTTTGGAGGGGAGGAGTGACGGGGAGGAACTGTCGATTACTACTTTGGTCAGTGGCAATTGGGGGAAATTGGAGCTAGAAAAAATTGGCGGGGCTCTTGATGTGAGCATTTACGTTGGGATTTATGTGCCTTCTGTGTTTGGTGTCAGAGGAAACGGTGCGCAGTTGGCTGTGGTGGGTCGTGGGAGAGATGTTGCTGCTGCTAAGTACTCGGATTGGGTAAGGATTAGGAAGTCTTTGGAGAGGTTGAGGCCGCCCTCGGGGACCGAGCTCCTGTTGTCCAATGATGGGGATCGGATTCTTGAAGGCAGCCTGTCAAACTTCTTTGTGGTCCGCCGAAAGGATGACAATGAAGCTAAAGAGCAAACTATCCACTGTTTTGAAGTACAGACAGCTCCTATTAGCGAGGGTGTCCTACCAGGAATTATACGCCAACTAGTCATTGAAGTATGCTTGAGCAAAGGAATCCCTTTTCGAGAAGTTGCACCACTGTGGTCAGAGCGTGAATTTTGGGAAGAGGCGTTCATTACAAATAGCTTAAGACTTATGCAGCATGCGGACATTGTTCGTGCTCCTAGTTCATGGGAATCACTGCATGGTAATTCATGGAAGGACATATCTTGGAAAGAGAAGCAGTTTGAGGAGGGTCCTGGAATGATTACTACAATACTCCAGAAGGAGATCATGGAAAAAGCAGTTTCAGAAGGATACTCTTTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

346

Amino Acids

38.48

Weight (kDa)

6.04

Isoelectric Point (pI)

31.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 196 - 289 1.9e-10 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 480
AccII CGCG 1 cut(s) 173
AciI CCGC 5 cut(s) 173, 408, 572, 652, 875
AclWI GGATC 2 cut(s) 197, 618
AcsI RAATTY 1 cut(s) 824
AfaI GTAC 3 cut(s) 194, 527, 705
AfiI CCNNNNNNNGG 5 cut(s) 96, 97, 578, 606, 658
AflII CTTAAG 1 cut(s) 856
AgsI TTSAA 4 cut(s) 163, 623, 701, 764
AhlI ACTAGT 1 cut(s) 754
AjnI CCWGG 3 cut(s) 94, 736, 967
AleI CACNNNNGTG 1 cut(s) 808
AloI GAACNNNNNNTCC 2 cut(s) 824, 856
AluBI AGCT 5 cut(s) 394, 589, 674, 713, 855
AluI AGCT 5 cut(s) 394, 589, 674, 713, 855
Alw21I GWGCWC 2 cut(s) 591, 892
Alw26I GTCTC 3 cut(s) 49, 80, 255
AlwI GGATC 2 cut(s) 197, 618
Ama87I CYCGRG 2 cut(s) 83, 577
AoxI GGCC 1 cut(s) 569
ApeKI GCWGC 5 cut(s) 310, 515, 518, 627, 868
ApoI RAATTY 1 cut(s) 824
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 4 cut(s) 221, 582, 649, 965
AsuHPI GGTGA 2 cut(s) 22, 64
AvaI CYCGRG 2 cut(s) 83, 577
AvaII GGWCC 4 cut(s) 221, 582, 649, 965
BanII GRGCYC 2 cut(s) 415, 591
BauI CACGAG 1 cut(s) 284
Bbv12I GWGCWC 2 cut(s) 591, 892
BbvI GCAGC 5 cut(s) 297, 502, 505, 639, 880
BccI CCATC 1 cut(s) 599
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 3 cut(s) 96, 738, 969
BciVI GTATCC 1 cut(s) 1019
BcoDI GTCTC 3 cut(s) 49, 80, 255
BcuI ACTAGT 1 cut(s) 754
BfaI CTAG 3 cut(s) 395, 755, 894
BfrI CTTAAG 1 cut(s) 856
BfuI GTATCC 1 cut(s) 1019
BisI GCNGC 6 cut(s) 311, 516, 519, 572, 628, 869
BlsI GCNGC 6 cut(s) 312, 517, 520, 573, 629, 870
BmcAI AGTACT 1 cut(s) 527
Bme1390I CCNGG 3 cut(s) 96, 738, 969
Bme18I GGWCC 4 cut(s) 221, 582, 649, 965
BmeT110I CYCGRG 2 cut(s) 83, 577
BmgT120I GGNCC 4 cut(s) 221, 582, 649, 965
BmiI GGNNCC 3 cut(s) 223, 583, 966
BmrFI CCNGG 3 cut(s) 96, 738, 969
BmsI GCATC 2 cut(s) 48, 266
BpmI CTGGAG 1 cut(s) 974
BpuEI CTTGAG 1 cut(s) 793
BsaBI GATNNNNATC 1 cut(s) 609
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 94, 95, 576
BsaXI ACNNNNNCTCC 3 cut(s) 25, 335, 365
Bsc4I CCNNNNNNNGG 5 cut(s) 96, 97, 578, 606, 658
Bse8I GATNNNNATC 1 cut(s) 609
BseBI CCWGG 3 cut(s) 96, 738, 969
BseDI CCNNGG 3 cut(s) 94, 95, 576
BseGI GGATG 2 cut(s) 257, 667
BseJI GATNNNNATC 1 cut(s) 609
BseLI CCNNNNNNNGG 5 cut(s) 96, 97, 578, 606, 658
BseMII CTCAG 1 cut(s) 31
BseRI GAGGAG 3 cut(s) 54, 346, 974
BseXI GCAGC 5 cut(s) 297, 502, 505, 639, 880
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 1 cut(s) 571
BsiHKAI GWGCWC 2 cut(s) 591, 892
BsiHKCI CYCGRG 2 cut(s) 83, 577
BslFI GGGAC 1 cut(s) 595
BslI CCNNNNNNNGG 5 cut(s) 96, 97, 578, 606, 658
BsmAI GTCTC 3 cut(s) 49, 80, 255
BsmBI CGTCTC 2 cut(s) 49, 255
BsmFI GGGAC 1 cut(s) 595
BsnI GGCC 1 cut(s) 571
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 2 cut(s) 83, 577
Bsp1286I GDGCHC 3 cut(s) 415, 591, 892
Bsp1407I TGTACA 1 cut(s) 192
Bsp143I GATC 4 cut(s) 202, 280, 610, 999
BspACI CCGC 5 cut(s) 173, 408, 572, 652, 875
BspANI GGCC 1 cut(s) 571
BspCNI CTCAG 1 cut(s) 30
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 3 cut(s) 223, 583, 966
BspPI GGATC 2 cut(s) 197, 618
BspTI CTTAAG 1 cut(s) 856
BspTNI GGTCTC 1 cut(s) 80
BsrGI TGTACA 1 cut(s) 192
BssECI CCNNGG 3 cut(s) 94, 95, 576
BssMI GATC 4 cut(s) 202, 280, 610, 999
BssSI CACGAG 1 cut(s) 284
Bst2BI CACGAG 1 cut(s) 284
Bst2UI CCWGG 3 cut(s) 96, 738, 969
Bst4CI ACNGT 5 cut(s) 249, 351, 476, 695, 810
Bst6I CTCTTC 1 cut(s) 828
BstAFI CTTAAG 1 cut(s) 856
BstAUI TGTACA 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 171, 873
BstDEI CTNAG 2 cut(s) 17, 522
BstF5I GGATG 2 cut(s) 257, 667
BstFNI CGCG 1 cut(s) 173
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 4 cut(s) 205, 283, 613, 1002
BstMAI GTCTC 3 cut(s) 49, 80, 255
BstMBI GATC 4 cut(s) 202, 280, 610, 999
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstNI CCWGG 3 cut(s) 96, 738, 969
BstNSI RCATGY 1 cut(s) 875
BstSCI CCNGG 3 cut(s) 94, 736, 967
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 5 cut(s) 297, 502, 505, 639, 880
BsuI GTATCC 1 cut(s) 1019
BsuRI GGCC 1 cut(s) 571
BtsCI GGATG 2 cut(s) 257, 667
BtsI GCAGTG 1 cut(s) 908
BtsIMutI CAGTG 4 cut(s) 376, 691, 806, 908
Cac8I GCNNGC 2 cut(s) 171, 873
CfoI GCGC 1 cut(s) 481
Cfr13I GGNCC 4 cut(s) 221, 582, 649, 965
Csp6I GTAC 3 cut(s) 193, 526, 704
CviAII CATG 5 cut(s) 872, 900, 914, 924, 1003
CviQI GTAC 3 cut(s) 193, 526, 704
DdeI CTNAG 2 cut(s) 17, 522
DpnI GATC 4 cut(s) 204, 282, 612, 1001
DpnII GATC 4 cut(s) 202, 280, 610, 999
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
EciI GGCGGA 1 cut(s) 641
Ecl136II GAGCTC 1 cut(s) 589
Eco24I GRGCYC 2 cut(s) 415, 591
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 4 cut(s) 221, 582, 649, 965
Eco53kI GAGCTC 1 cut(s) 589
Eco88I CYCGRG 2 cut(s) 83, 577
EcoICRI GAGCTC 1 cut(s) 589
EcoO109I RGGNCCY 1 cut(s) 965
EcoRII CCWGG 3 cut(s) 94, 736, 967
EcoT38I GRGCYC 2 cut(s) 415, 591
Esp3I CGTCTC 2 cut(s) 49, 255
FaeI CATG 5 cut(s) 875, 903, 917, 927, 1006
FaqI GGGAC 1 cut(s) 595
FatI CATG 5 cut(s) 871, 899, 913, 923, 1002
FauI CCCGC 1 cut(s) 401
Fnu4HI GCNGC 6 cut(s) 311, 516, 519, 572, 628, 869
FokI GGATG 2 cut(s) 244, 674
FriOI GRGCYC 2 cut(s) 415, 591
Fsp4HI GCNGC 6 cut(s) 311, 516, 519, 572, 628, 869
FspBI CTAG 3 cut(s) 395, 755, 894
FspI TGCGCA 1 cut(s) 480
GlaI GCGC 1 cut(s) 480
GluI GCNGC 6 cut(s) 311, 516, 519, 572, 628, 869
GsuI CTGGAG 1 cut(s) 974
HaeIII GGCC 1 cut(s) 571
HhaI GCGC 1 cut(s) 481
Hin1II CATG 5 cut(s) 875, 903, 917, 927, 1006
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HinfI GANTC 7 cut(s) 112, 176, 186, 293, 616, 783, 905
HphI GGTGA 2 cut(s) 22, 64
Hpy188I TCNGA 6 cut(s) 221, 467, 532, 615, 817, 1021
Hpy188III TCNNGA 6 cut(s) 85, 286, 416, 620, 794, 991
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 6 cut(s) 88, 459, 617, 922, 988, 1016
HpyCH4III ACNGT 5 cut(s) 249, 351, 476, 695, 810
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 4 cut(s) 257, 803, 868, 913
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
HpyF3I CTNAG 2 cut(s) 17, 522
HpySE526I ACGT 1 cut(s) 432
Hsp92II CATG 5 cut(s) 875, 903, 917, 927, 1006
HspAI GCGC 1 cut(s) 479
Kzo9I GATC 4 cut(s) 202, 280, 610, 999
LmnI GCTCC 5 cut(s) 279, 391, 594, 718, 895
Lsp1109I GCAGC 5 cut(s) 297, 502, 505, 639, 880
LweI GCATC 2 cut(s) 48, 266
MaeI CTAG 3 cut(s) 395, 755, 894
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 2 cut(s) 70, 335
MalI GATC 4 cut(s) 204, 282, 612, 1001
MboI GATC 4 cut(s) 202, 280, 610, 999
MboII GAAGA 1 cut(s) 845
MfeI CAATTG 2 cut(s) 315, 376
MhlI GDGCHC 3 cut(s) 415, 591, 892
MluCI AATT 8 cut(s) 262, 315, 376, 386, 402, 741, 824, 919
MlyI GAGTC 2 cut(s) 106, 185
MmeI TCCRAC 1 cut(s) 72
MseI TTAA 1 cut(s) 857
MslI CAYNNNNRTG 1 cut(s) 808
MspCI CTTAAG 1 cut(s) 856
MspR9I CCNGG 3 cut(s) 96, 738, 969
MunI CAATTG 2 cut(s) 315, 376
MvaI CCWGG 3 cut(s) 96, 738, 969
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 485
NdeII GATC 4 cut(s) 202, 280, 610, 999
NlaIII CATG 5 cut(s) 875, 903, 917, 927, 1006
NlaIV GGNNCC 3 cut(s) 223, 583, 966
NmuCI GTSAC 2 cut(s) 70, 335
NsbI TGCGCA 1 cut(s) 480
NspI RCATGY 1 cut(s) 875
OliI CACNNNNGTG 1 cut(s) 808
PaeI GCATGC 1 cut(s) 875
PaeR7I CTCGAG 1 cut(s) 83
PasI CCCWGGG 1 cut(s) 95
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 177
PfeI GAWTC 5 cut(s) 186, 293, 616, 783, 905
PfoI TCCNGGA 1 cut(s) 967
PkrI GCNGC 6 cut(s) 312, 517, 520, 573, 629, 870
PleI GAGTC 2 cut(s) 106, 184
PpsI GAGTC 2 cut(s) 106, 184
PpuMI RGGWCCY 1 cut(s) 965
Psp124BI GAGCTC 1 cut(s) 591
Psp5II RGGWCCY 1 cut(s) 965
Psp6I CCWGG 3 cut(s) 94, 736, 967
PspGI CCWGG 3 cut(s) 94, 736, 967
PspN4I GGNNCC 3 cut(s) 223, 583, 966
PspPI GGNCC 4 cut(s) 221, 582, 649, 965
PspPPI RGGWCCY 1 cut(s) 965
RsaI GTAC 3 cut(s) 194, 527, 705
RsaNI GTAC 3 cut(s) 193, 526, 704
RseI CAYNNNNRTG 1 cut(s) 808
SacI GAGCTC 1 cut(s) 591
SaqAI TTAA 1 cut(s) 857
SatI GCNGC 6 cut(s) 311, 516, 519, 572, 628, 869
Sau3AI GATC 4 cut(s) 202, 280, 610, 999
Sau96I GGNCC 4 cut(s) 221, 582, 649, 965
ScaI AGTACT 1 cut(s) 527
SchI GAGTC 2 cut(s) 106, 185
ScrFI CCNGG 3 cut(s) 96, 738, 969
SduI GDGCHC 3 cut(s) 415, 591, 892
SetI ASST 9 cut(s) 23, 80, 396, 435, 566, 591, 676, 715, 857
SfaNI GCATC 2 cut(s) 48, 266
Sfr274I CTCGAG 1 cut(s) 83
SinI GGWCC 4 cut(s) 221, 582, 649, 965
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 808
SmlI CTYRAG 3 cut(s) 83, 772, 856
SmoI CTYRAG 3 cut(s) 83, 772, 856
SpeI ACTAGT 1 cut(s) 754
SphI GCATGC 1 cut(s) 875
Sse9I AATT 8 cut(s) 262, 315, 376, 386, 402, 741, 824, 919
SsiI CCGC 5 cut(s) 173, 408, 572, 652, 875
SspMI CTAG 3 cut(s) 395, 755, 894
SstI GAGCTC 1 cut(s) 591
StyD4I CCNGG 3 cut(s) 94, 736, 967
TaaI ACNGT 5 cut(s) 249, 351, 476, 695, 810
TaiI ACGT 1 cut(s) 435
TaqI TCGA 4 cut(s) 84, 296, 353, 793
TaqII GACCGA 1 cut(s) 599
TasI AATT 8 cut(s) 262, 315, 376, 386, 402, 741, 824, 919
TatI WGTACW 3 cut(s) 192, 525, 703
TauI GCSGC 1 cut(s) 574
TfiI GAWTC 5 cut(s) 186, 293, 616, 783, 905
Tru1I TTAA 1 cut(s) 857
Tru9I TTAA 1 cut(s) 857
TscAI CASTG 4 cut(s) 376, 698, 813, 915
TseFI GTSAC 2 cut(s) 70, 335
TseI GCWGC 5 cut(s) 310, 515, 518, 627, 868
Tsp45I GTSAC 2 cut(s) 70, 335
TspDTI ATGAA 5 cut(s) 314, 684, 832, 888, 912
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 4 cut(s) 376, 698, 813, 915
Vha464I CTTAAG 1 cut(s) 856
VpaK11BI GGWCC 4 cut(s) 221, 582, 649, 965
XapI RAATTY 1 cut(s) 824
XceI RCATGY 1 cut(s) 875
XhoI CTCGAG 1 cut(s) 83
XspI CTAG 3 cut(s) 395, 755, 894
ZrmI AGTACT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.