Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004670

Physical Location & Seq

Genomic Coordinates Forward (+)

24824288 .. 24827114

Gene Structure 2827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G219400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAACGACACTGTACTGGCAGTCAACCTCTTCGATCACTTTCACTACTACAAACCCAGAACCTCAACGATTAAAACTCAATGGCGACCATCAGCAACTAAATCAATGGCGACTTTAAGCCCCAGGTTCTTGTTCAGCAAGGGCGTCGTTTCACAGCCCGCCAACACTCCACCGGTTACAAGCTTCCTCGAAACGCATCCAGGAGCGTACACGACGTCTCGCACTCACAAAGACGCGTCGTTCGTGCTGTTCTGGGAACGACACTTGAAGAGACTGGTGGACTCAGTAGCAATTCTATACAATTCGAATCCTCAGCTTCTGTTCGGACCGAACAAAACGACGTCGCTTTCGTTGCCGTCGCTCTCCTCCGACTCCCCTTTGCTCCAGTCAGAGGTTCGCGAGCTCGTGAATCGTTCGATGAAACGAGTGTTGCCGATTGCTTTGAATGAGAGGAGTGAGGGAGAGGAACTGTCAATTACAGCTCTGGTCAGTGGCAATTTGGAGAAATTGAGTGAGAATGAGAGTGAGGGCTTGGACCATGAAAGATTTGGCAATGGGGTTTTTGATGTGAGTATTTACATTGGGACTTATGTGCCAACTGTGTTTGGTATCGAAGGAAACGGTGCCCATTTGGCTGTGGTGGGTCGTGGGAGAGACGATGCCTCTGCTAAGTATTCGGATTGGGTGAGGATTAGGAAATCTTTGGAGAGGTTGAGGCCGCCCAATGGGACCGAGCTCTTGTTGTCTAATGACGGTGACCGGATTCTTGAGGGGACGGTCTCAAACTTCTTTGTCGTCTGCCGGAAGGATAACGATGAAGCTAAGGGGCAAAGTGTGCACTGTTTTGAAGTACAGACAGCTCCTATTATTGATCATGTCCTTCCAGGAATTATACGCCAATTGGTCATTGAAGTATGCTTGAGCAAGGGAATCCCCTTTCGAGAAGTTGCACCATCGTGGTCAGAGAGTGAATTTTGGGCAGAGGCGTTCATTACAAGTAGCTTGAGACTTCTGCAGCACGCAGAGACAATTAGTTTTCCAAGTTCATGGGAATCACTAAATTCTAAATCTTGGGGGGAGATCTCATGGAAAGACAAACATTTTGAGGAGGGTCCTGGGATGGTCACTACAATAATCCAGAAAGAGGTCATGGAGAAAGCAGCTTCAGAAGGGTACTTTCTCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

396

Amino Acids

44.15

Weight (kDa)

5.93

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54970 AT3G54970 AT3G54970 AT3G54970 AT3G54970 AT3G54970
fragaria_vesca	FvH4_7g20280 FvH4_7g20280 FvH4_7g20280 FvH4_7g20280 FvH4_7g20280
malus_domestica	MD01G1112500.v1.1
prunus_persica	Prupe.2G216400_v2.0.a1 Prupe.2G216400_v2.0.a1 Prupe.2G216400_v2.0.a1 Prupe.2G216400_v2.0.a1 Prupe.2G216400_v2.0.a1 Prupe.2G219400_v2.0.a1
pyrus_communis	pycom01g14100
rosa_chinensis	RchiOBHm_Chr1g0364231
rosa_laevigata	RLG00000027504
rosa_multiflora	Rmu_sc0000071.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292550
rosa_rugosa	Rorug01G0315100 Rorug01G0315100 Rorug01G0315200
rosa_samantha	Rh1AG322300 Rh1BG285200 Rh1CG301600 Rh1DG316600
rosa_wichuraiana	Rw1G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	218, 344
AccB1I	GGYRCC	1 cut(s)	623
AccII	CGCG	2 cut(s)	236, 399
AciI	CCGC	2 cut(s)	159, 719
AcsI	RAATTY	2 cut(s)	971, 1060
AcuI	CTGAAG	1 cut(s)	1149
AcyI	GRCGYC	3 cut(s)	144, 215, 341
AfaI	GTAC	4 cut(s)	15, 209, 852, 1175
AfiI	CCNNNNNNNGG	3 cut(s)	391, 725, 1144
AflIII	ACRYGT	1 cut(s)	234
AgeI	ACCGGT	1 cut(s)	172
AgsI	TTSAA	4 cut(s)	268, 445, 848, 911
AjnI	CCWGG	4 cut(s)	122, 199, 883, 1114
AleI	CACNNNNGTG	1 cut(s)	955
AluBI	AGCT	9 cut(s)	183, 316, 403, 482, 736, 821, 860, 1002, 1163
AluI	AGCT	9 cut(s)	183, 316, 403, 482, 736, 821, 860, 1002, 1163
Alw21I	GWGCWC	3 cut(s)	405, 738, 840
Alw26I	GTCTC	6 cut(s)	222, 265, 648, 784, 1000, 1019
Alw44I	GTGCAC	1 cut(s)	836
AlwNI	CAGNNNCTG	1 cut(s)	319
AoxI	GGCC	1 cut(s)	716
ApaLI	GTGCAC	1 cut(s)	836
ApeKI	GCWGC	2 cut(s)	1015, 1160
ApoI	RAATTY	2 cut(s)	971, 1060
ArsI	GACNNNNNNTTYG	6 cut(s)	224, 256, 331, 363, 1085, 1117
AsiGI	ACCGGT	1 cut(s)	172
AspS9I	GGNCC	4 cut(s)	326, 535, 729, 1112
AsuHPI	GGTGA	2 cut(s)	697, 767
AsuII	TTCGAA	1 cut(s)	305
AvaII	GGWCC	4 cut(s)	326, 535, 729, 1112
BaeGI	GKGCMC	2 cut(s)	628, 840
BanI	GGYRCC	1 cut(s)	623
BanII	GRGCYC	2 cut(s)	405, 738
BauI	CACGAG	1 cut(s)	404
Bbv12I	GWGCWC	3 cut(s)	405, 738, 840
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	1027, 1172
BccI	CCATC	3 cut(s)	97, 961, 1114
BceAI	ACGGC	1 cut(s)	340
BcgI	CGANNNNNNTGC	4 cut(s)	127, 161, 647, 681
BciT130I	CCWGG	4 cut(s)	124, 201, 885, 1116
BclI	TGATCA	1 cut(s)	871
BcoDI	GTCTC	6 cut(s)	222, 265, 648, 784, 1000, 1019
BfmI	CTRYAG	1 cut(s)	1013
BglI	GCCNNNNNGGC	1 cut(s)	632
BglII	AGATCT	1 cut(s)	1080
BisI	GCNGC	3 cut(s)	719, 1016, 1161
BlsI	GCNGC	3 cut(s)	720, 1017, 1162
Bme1390I	CCNGG	4 cut(s)	124, 201, 885, 1116
Bme18I	GGWCC	4 cut(s)	326, 535, 729, 1112
BmgT120I	GGNCC	4 cut(s)	326, 535, 729, 1112
BmiI	GGNNCC	3 cut(s)	625, 730, 1113
BmrFI	CCNGG	4 cut(s)	124, 201, 885, 1116
BmsI	GCATC	2 cut(s)	205, 649
BpmI	CTGGAG	1 cut(s)	368
Bpu10I	CCTNAGC	2 cut(s)	312, 822
Bpu14I	TTCGAA	1 cut(s)	305
BpuEI	CTTGAG	3 cut(s)	788, 940, 1024
BsaHI	GRCGYC	3 cut(s)	144, 215, 341
BsaI	GGTCTC	1 cut(s)	784
BsaJI	CCNNGG	2 cut(s)	122, 1115
BsaWI	WCCGGW	2 cut(s)	172, 759
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 725, 1144
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	3 cut(s)	21, 279, 385
Bse3DI	GCAATG	1 cut(s)	559
BseBI	CCWGG	4 cut(s)	124, 201, 885, 1116
BseDI	CCNNGG	2 cut(s)	122, 1115
BseGI	GGATG	2 cut(s)	196, 1125
BseLI	CCNNNNNNNGG	3 cut(s)	391, 725, 1144
BseMI	GCAATG	1 cut(s)	559
BseMII	CTCAG	2 cut(s)	297, 326
BseNI	ACTGG	3 cut(s)	21, 279, 385
BseRI	GAGGAG	3 cut(s)	355, 466, 1121
BseSI	GKGCMC	2 cut(s)	628, 840
BseXI	GCAGC	2 cut(s)	1027, 1172
Bsh1236I	CGCG	2 cut(s)	236, 399
BshFI	GGCC	1 cut(s)	718
BshNI	GGYRCC	1 cut(s)	623
BshTI	ACCGGT	1 cut(s)	172
BsiHKAI	GWGCWC	3 cut(s)	405, 738, 840
BsiSI	CCGG	3 cut(s)	173, 760, 802
BslFI	GGGAC	3 cut(s)	598, 742, 787
BslI	CCNNNNNNNGG	3 cut(s)	391, 725, 1144
BsmAI	GTCTC	6 cut(s)	222, 265, 648, 784, 1000, 1019
BsmBI	CGTCTC	2 cut(s)	222, 648
BsmFI	GGGAC	3 cut(s)	598, 742, 787
BsnI	GGCC	1 cut(s)	718
Bso31I	GGTCTC	1 cut(s)	784
Bsp119I	TTCGAA	1 cut(s)	305
Bsp1286I	GDGCHC	4 cut(s)	405, 628, 738, 840
Bsp143I	GATC	3 cut(s)	34, 871, 1080
Bsp68I	TCGCGA	1 cut(s)	399
BspACI	CCGC	2 cut(s)	159, 719
BspANI	GGCC	1 cut(s)	718
BspCNI	CTCAG	2 cut(s)	296, 325
BspFNI	CGCG	2 cut(s)	236, 399
BspLI	GGNNCC	3 cut(s)	625, 730, 1113
BspMAI	CTGCAG	1 cut(s)	1017
BspT104I	TTCGAA	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	784
BsrDI	GCAATG	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	21, 279, 385
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	122, 1115
BssMI	GATC	3 cut(s)	34, 871, 1080
BssNI	GRCGYC	3 cut(s)	144, 215, 341
BssSI	CACGAG	1 cut(s)	404
Bst2BI	CACGAG	1 cut(s)	404
Bst2UI	CCWGG	4 cut(s)	124, 201, 885, 1116
Bst4CI	ACNGT	7 cut(s)	13, 471, 601, 623, 755, 778, 842
Bst6I	CTCTTC	2 cut(s)	35, 263
BstACI	GRCGYC	3 cut(s)	144, 215, 341
BstAPI	GCANNNNNTGC	1 cut(s)	835
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	3 cut(s)	159, 401, 1020
BstDEI	CTNAG	5 cut(s)	283, 312, 669, 822, 1181
BstEII	GGTNACC	1 cut(s)	755
BstF5I	GGATG	2 cut(s)	196, 1125
BstFNI	CGCG	2 cut(s)	236, 399
BstKTI	GATC	3 cut(s)	37, 874, 1083
BstMAI	GTCTC	6 cut(s)	222, 265, 648, 784, 1000, 1019
BstMBI	GATC	3 cut(s)	34, 871, 1080
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 632, 835
BstNI	CCWGG	4 cut(s)	124, 201, 885, 1116
BstPI	GGTNACC	1 cut(s)	755
BstSCI	CCNGG	4 cut(s)	122, 199, 883, 1114
BstSFI	CTRYAG	1 cut(s)	1013
BstSLI	GKGCMC	2 cut(s)	628, 840
BstUI	CGCG	2 cut(s)	236, 399
BstV1I	GCAGC	2 cut(s)	1027, 1172
BstX2I	RGATCY	1 cut(s)	1080
BstXI	CCANNNNNNTGG	1 cut(s)	1047
BstYI	RGATCY	1 cut(s)	1080
BsuRI	GGCC	1 cut(s)	718
BtsCI	GGATG	2 cut(s)	196, 1125
BtsIMutI	CAGTG	3 cut(s)	9, 496, 838
BtuMI	TCGCGA	1 cut(s)	399
Cac8I	GCNNGC	3 cut(s)	159, 401, 1020
CaiI	CAGNNNCTG	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	4 cut(s)	326, 535, 729, 1112
CpoI	CGGWCCG	1 cut(s)	326
CseI	GACGC	3 cut(s)	133, 225, 242
Csp6I	GTAC	4 cut(s)	14, 208, 851, 1174
CspAI	ACCGGT	1 cut(s)	172
CspI	CGGWCCG	1 cut(s)	326
CviAII	CATG	5 cut(s)	539, 875, 1047, 1086, 1150
CviQI	GTAC	4 cut(s)	14, 208, 851, 1174
DdeI	CTNAG	5 cut(s)	283, 312, 669, 822, 1181
DpnI	GATC	3 cut(s)	36, 873, 1082
DpnII	GATC	3 cut(s)	34, 871, 1080
Eam1104I	CTCTTC	2 cut(s)	35, 263
EarI	CTCTTC	2 cut(s)	35, 263
Ecl136II	GAGCTC	2 cut(s)	403, 736
Eco24I	GRGCYC	2 cut(s)	405, 738
Eco31I	GGTCTC	1 cut(s)	784
Eco47I	GGWCC	4 cut(s)	326, 535, 729, 1112
Eco53kI	GAGCTC	2 cut(s)	403, 736
Eco57I	CTGAAG	1 cut(s)	1149
Eco91I	GGTNACC	1 cut(s)	755
EcoICRI	GAGCTC	2 cut(s)	403, 736
EcoO109I	RGGNCCY	1 cut(s)	1112
EcoO65I	GGTNACC	1 cut(s)	755
EcoRII	CCWGG	4 cut(s)	122, 199, 883, 1114
EcoT38I	GRGCYC	2 cut(s)	405, 738
Esp3I	CGTCTC	2 cut(s)	222, 648
FaeI	CATG	5 cut(s)	542, 878, 1050, 1089, 1153
FaiI	YATR	9 cut(s)	298, 540, 591, 876, 893, 916, 1048, 1087, 1151
FaqI	GGGAC	3 cut(s)	598, 742, 787
FatI	CATG	5 cut(s)	538, 874, 1046, 1085, 1149
FauI	CCCGC	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	871
Fnu4HI	GCNGC	3 cut(s)	719, 1016, 1161
FokI	GGATG	2 cut(s)	183, 1132
FriOI	GRGCYC	2 cut(s)	405, 738
Fsp4HI	GCNGC	3 cut(s)	719, 1016, 1161
GluI	GCNGC	3 cut(s)	719, 1016, 1161
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	718
HapII	CCGG	3 cut(s)	173, 760, 802
HgaI	GACGC	3 cut(s)	133, 225, 242
Hin1I	GRCGYC	3 cut(s)	144, 215, 341
Hin1II	CATG	5 cut(s)	542, 878, 1050, 1089, 1153
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	7 cut(s)	281, 307, 371, 409, 763, 930, 1052
HpaII	CCGG	3 cut(s)	173, 760, 802
HphI	GGTGA	2 cut(s)	697, 767
Hpy166II	GTNNAC	4 cut(s)	25, 210, 280, 838
Hpy188I	TCNGA	6 cut(s)	326, 370, 391, 679, 964, 1168
Hpy188III	TCNNGA	5 cut(s)	398, 406, 767, 941, 1138
Hpy8I	GTNNAC	4 cut(s)	25, 210, 280, 838
Hpy99I	CGWCG	6 cut(s)	149, 217, 241, 343, 346, 361
HpyAV	CCTTC	4 cut(s)	608, 799, 890, 1163
HpyCH4III	ACNGT	7 cut(s)	13, 471, 601, 623, 755, 778, 842
HpyCH4IV	ACGT	2 cut(s)	215, 341
HpyCH4V	TGCA	3 cut(s)	838, 950, 1015
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 632, 835
HpyF3I	CTNAG	5 cut(s)	283, 312, 669, 822, 1181
HpySE526I	ACGT	2 cut(s)	215, 341
Hsp92I	GRCGYC	3 cut(s)	144, 215, 341
Hsp92II	CATG	5 cut(s)	542, 878, 1050, 1089, 1153
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	3 cut(s)	34, 871, 1080
LmnI	GCTCC	3 cut(s)	203, 387, 865
Lsp1109I	GCAGC	2 cut(s)	1027, 1172
LweI	GCATC	2 cut(s)	205, 649
MaeII	ACGT	2 cut(s)	215, 341
MaeIII	GTNAC	3 cut(s)	175, 755, 1123
MalI	GATC	3 cut(s)	36, 873, 1082
MboI	GATC	3 cut(s)	34, 871, 1080
MboII	GAAGA	2 cut(s)	22, 280
MfeI	CAATTG	1 cut(s)	899
MflI	RGATCY	1 cut(s)	1080
MhlI	GDGCHC	4 cut(s)	405, 628, 738, 840
MluI	ACGCGT	1 cut(s)	234
MlyI	GAGTC	2 cut(s)	275, 365
MmeI	TCCRAC	1 cut(s)	393
MseI	TTAA	2 cut(s)	72, 116
MslI	CAYNNNNRTG	1 cut(s)	955
MspI	CCGG	3 cut(s)	173, 760, 802
MspR9I	CCNGG	4 cut(s)	124, 201, 885, 1116
MunI	CAATTG	1 cut(s)	899
MvaI	CCWGG	4 cut(s)	124, 201, 885, 1116
MvnI	CGCG	2 cut(s)	236, 399
MwoI	GCNNNNNNNGC	3 cut(s)	352, 632, 835
NdeII	GATC	3 cut(s)	34, 871, 1080
NlaIII	CATG	5 cut(s)	542, 878, 1050, 1089, 1153
NlaIV	GGNNCC	3 cut(s)	625, 730, 1113
NmuCI	GTSAC	2 cut(s)	755, 1123
NruI	TCGCGA	1 cut(s)	399
NspV	TTCGAA	1 cut(s)	305
OliI	CACNNNNGTG	1 cut(s)	955
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 347
PfeI	GAWTC	5 cut(s)	307, 409, 763, 930, 1052
PfoI	TCCNGGA	2 cut(s)	199, 883
PinAI	ACCGGT	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	720, 1017, 1162
PleI	GAGTC	2 cut(s)	275, 365
PpsI	GAGTC	2 cut(s)	275, 365
PpuMI	RGGWCCY	1 cut(s)	1112
Psp124BI	GAGCTC	2 cut(s)	405, 738
Psp5II	RGGWCCY	1 cut(s)	1112
Psp6I	CCWGG	4 cut(s)	122, 199, 883, 1114
PspEI	GGTNACC	1 cut(s)	755
PspGI	CCWGG	4 cut(s)	122, 199, 883, 1114
PspN4I	GGNNCC	3 cut(s)	625, 730, 1113
PspPI	GGNCC	4 cut(s)	326, 535, 729, 1112
PspPPI	RGGWCCY	1 cut(s)	1112
PstI	CTGCAG	1 cut(s)	1017
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	1080
RruI	TCGCGA	1 cut(s)	399
RsaI	GTAC	4 cut(s)	15, 209, 852, 1175
RsaNI	GTAC	4 cut(s)	14, 208, 851, 1174
RseI	CAYNNNNRTG	1 cut(s)	955
Rsr2I	CGGWCCG	1 cut(s)	326
RsrII	CGGWCCG	1 cut(s)	326
SacI	GAGCTC	2 cut(s)	405, 738
SaqAI	TTAA	2 cut(s)	72, 116
SatI	GCNGC	3 cut(s)	719, 1016, 1161
Sau3AI	GATC	3 cut(s)	34, 871, 1080
Sau96I	GGNCC	4 cut(s)	326, 535, 729, 1112
SchI	GAGTC	2 cut(s)	275, 365
ScrFI	CCNGG	4 cut(s)	124, 201, 885, 1116
SduI	GDGCHC	4 cut(s)	405, 628, 738, 840
SfaNI	GCATC	2 cut(s)	205, 649
SfcI	CTRYAG	1 cut(s)	1013
SfuI	TTCGAA	1 cut(s)	305
SinI	GGWCC	4 cut(s)	326, 535, 729, 1112
SmiMI	CAYNNNNRTG	1 cut(s)	955
SmlI	CTYRAG	3 cut(s)	767, 919, 1003
SmoI	CTYRAG	3 cut(s)	767, 919, 1003
SsiI	CCGC	2 cut(s)	159, 719
SstI	GAGCTC	2 cut(s)	405, 738
StyD4I	CCNGG	4 cut(s)	122, 199, 883, 1114
TaaI	ACNGT	7 cut(s)	13, 471, 601, 623, 755, 778, 842
TaiI	ACGT	2 cut(s)	218, 344
TaqI	TCGA	6 cut(s)	33, 189, 305, 416, 612, 940
TaqII	GACCGA	2 cut(s)	343, 746
TatI	WGTACW	2 cut(s)	13, 850
TauI	GCSGC	1 cut(s)	721
TfiI	GAWTC	5 cut(s)	307, 409, 763, 930, 1052
Tru1I	TTAA	2 cut(s)	72, 116
Tru9I	TTAA	2 cut(s)	72, 116
TscAI	CASTG	3 cut(s)	16, 496, 845
TseFI	GTSAC	2 cut(s)	755, 1123
TseI	GCWGC	2 cut(s)	1015, 1160
Tsp45I	GTSAC	2 cut(s)	755, 1123
TspDTI	ATGAA	6 cut(s)	17, 434, 555, 831, 979, 1035
TspRI	CASTG	3 cut(s)	16, 496, 845
VneI	GTGCAC	1 cut(s)	836
VpaK11BI	GGWCC	4 cut(s)	326, 535, 729, 1112
XapI	RAATTY	2 cut(s)	971, 1060
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
ZraI	GACGTC	2 cut(s)	216, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.