Rmu_sc0000071.1_g000001

Amino-transferase class IV

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000071.1
Physical Location & Seq
Forward (+)
1205 .. 6140
4936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000071.1_g000001.1.cds

Sequence Viewer

Length: 1713 bp
atgacgactactcctctcaggttcttgctcgccaacggcgtcgtctccgaccctgccaacactcctcccgtcaccaccttcctcgagacccacccaggggcttacacgacgactcgcactcacaacaacgcctcgttcgtgttgttttgggataggcacttgaaaaggctcgcggagtccgtgagaatcctgtacaatgcggatcctcagcttctgttcggacccaacaagacttcgcttccattaccgtctcttgcatccaattctcttttgctccacgatctcgtgaatgattcgatgaaaaaagtgctgccaattgctttggaggggaggagtgacggggaggaactgtcgattactactttggtcagtggcaatttggggaaattggagctagaaaaaattggcggggctcttgatgtgagcatttacgttgggatttatgtgccttctgtgtttggtgtcagaggaaacggtgcgcagttggctgtggtgggtcgtgggagagatgttgctgctgctaagtactcggattgggtgaggattaggaagtctttggagaggttgaggccgccctcggggaccgagctcttgttgtccaatgatggggatcggattcttgaaggcagcctgtcaaacttctttgtggtccgccgaaagctgttcgacgaaatgacgactactcctctcaggttcttgctcgccaacggcgtcgtctccgaccctgccaacactcctcccgtcaccaccttcctcgagacccacccaggggcttacacgacgactcgcactcacaacaacgcctcgttcgtgttgttttgggataggcacttgaaaaggctcgcggagtccgtgagaatcctgtacaatgcggatcctcagcttctgttcggacccaacaagacttcgcttccattaccgtctcttgcatccaattctcttttgctccacgatctcgtgaatgattcgatgaaaaaagtgctgccaattgctttggaggggaggagtgacggggaggaactgtcgattactactttggtcagtggcaatttggggaaattggagctagaaaaaattggcggggctcttgatgtgagcatttacgttgggatttatgtgccttctgtgtttggtgtcagaggaaacggtgcgcagttggctgtggtgggtcgtgggagagatgttgctgctgctaagtactcggattgggtgaggattaggaagtctttggagaggttgaggccgccctcggggaccgagctcttgttgtccaatgatggggatcggattcttgaaggcagcctgtcaaacttctttgtggtccgccgaaaggatgacaatgaagctaaagagcaaactatccactgttttgaagtacagacagctcctattagcgagggtgtcctaccaggaattatacgccaactagtcattgaagtatgcttgagcaaaggaatcccttttcgagaagttgcaccactgtggtcagagcatgaattttgggaagaggcgttcattacaaatagcttaagacttatgcagcatgcggagattgtttgtgctcctagttcatgggaatcactgcatggtaattcatggaaggacatatcttggaaagagaagcagtttgaggagggtcctggaatgattactacaatactccagaaggagatcatggaaaaagcagtttcagaaggatactctttgagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

570

Amino Acids

62.83

Weight (kDa)

6.23

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 480, 1152
AccII CGCG 2 cut(s) 173, 845
AclWI GGATC 6 cut(s) 197, 210, 618, 869, 882, 1290
AcsI RAATTY 1 cut(s) 1496
AcyI GRCGYC 2 cut(s) 39, 711
AfaI GTAC 5 cut(s) 194, 527, 866, 1199, 1377
AfiI CCNNNNNNNGG 9 cut(s) 96, 97, 578, 606, 768, 769, 1250, 1278, 1330
AflII CTTAAG 1 cut(s) 1528
AgsI TTSAA 6 cut(s) 163, 623, 835, 1295, 1373, 1436
AhlI ACTAGT 1 cut(s) 1426
AjnI CCWGG 4 cut(s) 94, 766, 1408, 1639
AleI CACNNNNGTG 1 cut(s) 1480
AloI GAACNNNNNNTCC 2 cut(s) 1496, 1528
Alw21I GWGCWC 3 cut(s) 591, 1263, 1564
Alw26I GTCTC 6 cut(s) 49, 80, 255, 721, 752, 927
AlwI GGATC 6 cut(s) 197, 210, 618, 869, 882, 1290
AlwNI CAGNNNCTG 2 cut(s) 214, 886
Ama87I CYCGRG 4 cut(s) 83, 577, 755, 1249
AoxI GGCC 2 cut(s) 569, 1241
ApeKI GCWGC 9 cut(s) 310, 515, 518, 627, 982, 1187, 1190, 1299, 1540
ApoI RAATTY 1 cut(s) 1496
AspLEI GCGC 2 cut(s) 481, 1153
AspS9I GGNCC 7 cut(s) 221, 582, 649, 893, 1254, 1321, 1637
AsuHPI GGTGA 4 cut(s) 64, 550, 736, 1222
AvaI CYCGRG 4 cut(s) 83, 577, 755, 1249
AvaII GGWCC 7 cut(s) 221, 582, 649, 893, 1254, 1321, 1637
BamHI GGATCC 2 cut(s) 202, 874
BanII GRGCYC 4 cut(s) 415, 591, 1087, 1263
BauI CACGAG 2 cut(s) 284, 956
Bbv12I GWGCWC 3 cut(s) 591, 1263, 1564
BbvCI CCTCAGC 2 cut(s) 207, 879
BbvI GCAGC 9 cut(s) 297, 502, 505, 639, 969, 1174, 1177, 1311, 1552
BccI CCATC 2 cut(s) 599, 1271
BceAI ACGGC 2 cut(s) 52, 724
BciT130I CCWGG 4 cut(s) 96, 768, 1410, 1641
BciVI GTATCC 1 cut(s) 1691
BcoDI GTCTC 6 cut(s) 49, 80, 255, 721, 752, 927
BcuI ACTAGT 1 cut(s) 1426
BfaI CTAG 4 cut(s) 395, 1067, 1427, 1566
BfrI CTTAAG 1 cut(s) 1528
BfuI GTATCC 1 cut(s) 1691
BmcAI AGTACT 2 cut(s) 527, 1199
Bme1390I CCNGG 4 cut(s) 96, 768, 1410, 1641
Bme18I GGWCC 7 cut(s) 221, 582, 649, 893, 1254, 1321, 1637
BmeT110I CYCGRG 4 cut(s) 83, 577, 755, 1249
BmgT120I GGNCC 7 cut(s) 221, 582, 649, 893, 1254, 1321, 1637
BmiI GGNNCC 7 cut(s) 204, 223, 583, 876, 895, 1255, 1638
BmrFI CCNGG 4 cut(s) 96, 768, 1410, 1641
BmsI GCATC 2 cut(s) 266, 938
BpmI CTGGAG 1 cut(s) 1646
Bpu10I CCTNAGC 2 cut(s) 207, 879
BpuEI CTTGAG 1 cut(s) 1465
BsaBI GATNNNNATC 2 cut(s) 609, 1281
BsaHI GRCGYC 2 cut(s) 39, 711
BsaI GGTCTC 2 cut(s) 80, 752
BsaJI CCNNGG 6 cut(s) 94, 95, 576, 766, 767, 1248
BsaXI ACNNNNNCTCC 7 cut(s) 25, 335, 365, 667, 697, 1007, 1037
Bsc4I CCNNNNNNNGG 9 cut(s) 96, 97, 578, 606, 768, 769, 1250, 1278, 1330
Bse8I GATNNNNATC 2 cut(s) 609, 1281
BseBI CCWGG 4 cut(s) 96, 768, 1410, 1641
BseDI CCNNGG 6 cut(s) 94, 95, 576, 766, 767, 1248
BseGI GGATG 3 cut(s) 257, 929, 1339
BseJI GATNNNNATC 2 cut(s) 609, 1281
BseLI CCNNNNNNNGG 9 cut(s) 96, 97, 578, 606, 768, 769, 1250, 1278, 1330
BseMII CTCAG 4 cut(s) 31, 221, 703, 893
BseRI GAGGAG 6 cut(s) 54, 346, 675, 726, 1018, 1646
BseXI GCAGC 9 cut(s) 297, 502, 505, 639, 969, 1174, 1177, 1311, 1552
Bsh1236I CGCG 2 cut(s) 173, 845
BshFI GGCC 2 cut(s) 571, 1243
BsiHKAI GWGCWC 3 cut(s) 591, 1263, 1564
BsiHKCI CYCGRG 4 cut(s) 83, 577, 755, 1249
BslFI GGGAC 2 cut(s) 595, 1267
BslI CCNNNNNNNGG 9 cut(s) 96, 97, 578, 606, 768, 769, 1250, 1278, 1330
BsmAI GTCTC 6 cut(s) 49, 80, 255, 721, 752, 927
BsmBI CGTCTC 4 cut(s) 49, 255, 721, 927
BsmFI GGGAC 2 cut(s) 595, 1267
BsnI GGCC 2 cut(s) 571, 1243
Bso31I GGTCTC 2 cut(s) 80, 752
BsoBI CYCGRG 4 cut(s) 83, 577, 755, 1249
Bsp1286I GDGCHC 5 cut(s) 415, 591, 1087, 1263, 1564
Bsp1407I TGTACA 2 cut(s) 192, 864
Bsp143I GATC 7 cut(s) 202, 280, 610, 874, 952, 1282, 1671
BspANI GGCC 2 cut(s) 571, 1243
BspCNI CTCAG 4 cut(s) 30, 220, 702, 892
BspFNI CGCG 2 cut(s) 173, 845
BspLI GGNNCC 7 cut(s) 204, 223, 583, 876, 895, 1255, 1638
BspPI GGATC 6 cut(s) 197, 210, 618, 869, 882, 1290
BspTI CTTAAG 1 cut(s) 1528
BspTNI GGTCTC 2 cut(s) 80, 752
BsrGI TGTACA 2 cut(s) 192, 864
BssECI CCNNGG 6 cut(s) 94, 95, 576, 766, 767, 1248
BssMI GATC 7 cut(s) 202, 280, 610, 874, 952, 1282, 1671
BssNI GRCGYC 2 cut(s) 39, 711
BssSI CACGAG 2 cut(s) 284, 956
Bst2BI CACGAG 2 cut(s) 284, 956
Bst2UI CCWGG 4 cut(s) 96, 768, 1410, 1641
Bst4CI ACNGT 8 cut(s) 249, 351, 476, 921, 1023, 1148, 1367, 1482
Bst6I CTCTTC 1 cut(s) 1500
BstACI GRCGYC 2 cut(s) 39, 711
BstAFI CTTAAG 1 cut(s) 1528
BstAUI TGTACA 2 cut(s) 192, 864
BstC8I GCNNGC 5 cut(s) 30, 171, 702, 843, 1545
BstDEI CTNAG 6 cut(s) 17, 207, 522, 689, 879, 1194
BstF5I GGATG 3 cut(s) 257, 929, 1339
BstFNI CGCG 2 cut(s) 173, 845
BstHHI GCGC 2 cut(s) 481, 1153
BstKTI GATC 7 cut(s) 205, 283, 613, 877, 955, 1285, 1674
BstMAI GTCTC 6 cut(s) 49, 80, 255, 721, 752, 927
BstMBI GATC 7 cut(s) 202, 280, 610, 874, 952, 1282, 1671
BstMWI GCNNNNNNNGC 2 cut(s) 485, 1157
BstNI CCWGG 4 cut(s) 96, 768, 1410, 1641
BstNSI RCATGY 1 cut(s) 1547
BstSCI CCNGG 4 cut(s) 94, 766, 1408, 1639
BstUI CGCG 2 cut(s) 173, 845
BstV1I GCAGC 9 cut(s) 297, 502, 505, 639, 969, 1174, 1177, 1311, 1552
BstX2I RGATCY 2 cut(s) 202, 874
BstYI RGATCY 2 cut(s) 202, 874
BsuI GTATCC 1 cut(s) 1691
BsuRI GGCC 2 cut(s) 571, 1243
BtsCI GGATG 3 cut(s) 257, 929, 1339
BtsI GCAGTG 1 cut(s) 1580
BtsIMutI CAGTG 5 cut(s) 376, 1048, 1363, 1478, 1580
Cac8I GCNNGC 5 cut(s) 30, 171, 702, 843, 1545
CaiI CAGNNNCTG 2 cut(s) 214, 886
CfoI GCGC 2 cut(s) 481, 1153
Cfr13I GGNCC 7 cut(s) 221, 582, 649, 893, 1254, 1321, 1637
CseI GACGC 2 cut(s) 28, 700
Csp6I GTAC 5 cut(s) 193, 526, 865, 1198, 1376
CviAII CATG 6 cut(s) 1493, 1544, 1572, 1586, 1596, 1675
CviQI GTAC 5 cut(s) 193, 526, 865, 1198, 1376
DdeI CTNAG 6 cut(s) 17, 207, 522, 689, 879, 1194
DpnI GATC 7 cut(s) 204, 282, 612, 876, 954, 1284, 1673
DpnII GATC 7 cut(s) 202, 280, 610, 874, 952, 1282, 1671
Eam1104I CTCTTC 1 cut(s) 1500
EarI CTCTTC 1 cut(s) 1500
EciI GGCGGA 2 cut(s) 641, 1313
Ecl136II GAGCTC 2 cut(s) 589, 1261
Eco24I GRGCYC 4 cut(s) 415, 591, 1087, 1263
Eco31I GGTCTC 2 cut(s) 80, 752
Eco47I GGWCC 7 cut(s) 221, 582, 649, 893, 1254, 1321, 1637
Eco53kI GAGCTC 2 cut(s) 589, 1261
Eco88I CYCGRG 4 cut(s) 83, 577, 755, 1249
EcoICRI GAGCTC 2 cut(s) 589, 1261
EcoO109I RGGNCCY 1 cut(s) 1637
EcoRII CCWGG 4 cut(s) 94, 766, 1408, 1639
EcoT38I GRGCYC 4 cut(s) 415, 591, 1087, 1263
Esp3I CGTCTC 4 cut(s) 49, 255, 721, 927
FaeI CATG 6 cut(s) 1496, 1547, 1575, 1589, 1599, 1678
FaqI GGGAC 2 cut(s) 595, 1267
FatI CATG 6 cut(s) 1492, 1543, 1571, 1585, 1595, 1674
FauI CCCGC 2 cut(s) 401, 1073
FokI GGATG 3 cut(s) 244, 916, 1346
FriOI GRGCYC 4 cut(s) 415, 591, 1087, 1263
FspBI CTAG 4 cut(s) 395, 1067, 1427, 1566
FspI TGCGCA 2 cut(s) 480, 1152
GlaI GCGC 2 cut(s) 480, 1152
GsuI CTGGAG 1 cut(s) 1646
HaeIII GGCC 2 cut(s) 571, 1243
HgaI GACGC 2 cut(s) 28, 700
HhaI GCGC 2 cut(s) 481, 1153
Hin1I GRCGYC 2 cut(s) 39, 711
Hin1II CATG 6 cut(s) 1496, 1547, 1575, 1589, 1599, 1678
Hin6I GCGC 2 cut(s) 479, 1151
HinP1I GCGC 2 cut(s) 479, 1151
HphI GGTGA 4 cut(s) 64, 550, 736, 1222
Hpy99I CGWCG 5 cut(s) 44, 112, 671, 716, 784
HpyAV CCTTC 9 cut(s) 88, 459, 617, 760, 1131, 1289, 1594, 1660, 1688
HpyCH4III ACNGT 8 cut(s) 249, 351, 476, 921, 1023, 1148, 1367, 1482
HpyCH4IV ACGT 2 cut(s) 432, 1104
HpyCH4V TGCA 5 cut(s) 257, 929, 1475, 1540, 1585
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 1157
HpyF3I CTNAG 6 cut(s) 17, 207, 522, 689, 879, 1194
HpySE526I ACGT 2 cut(s) 432, 1104
Hsp92I GRCGYC 2 cut(s) 39, 711
Hsp92II CATG 6 cut(s) 1496, 1547, 1575, 1589, 1599, 1678
HspAI GCGC 2 cut(s) 479, 1151
Kzo9I GATC 7 cut(s) 202, 280, 610, 874, 952, 1282, 1671
LmnI GCTCC 6 cut(s) 279, 391, 951, 1063, 1390, 1567
Lsp1109I GCAGC 9 cut(s) 297, 502, 505, 639, 969, 1174, 1177, 1311, 1552
LweI GCATC 2 cut(s) 266, 938
MaeI CTAG 4 cut(s) 395, 1067, 1427, 1566
MaeII ACGT 2 cut(s) 432, 1104
MaeIII GTNAC 4 cut(s) 70, 335, 742, 1007
MalI GATC 7 cut(s) 204, 282, 612, 876, 954, 1284, 1673
MboI GATC 7 cut(s) 202, 280, 610, 874, 952, 1282, 1671
MboII GAAGA 1 cut(s) 1517
MfeI CAATTG 2 cut(s) 315, 987
MflI RGATCY 2 cut(s) 202, 874
MhlI GDGCHC 5 cut(s) 415, 591, 1087, 1263, 1564
MlyI GAGTC 4 cut(s) 106, 185, 778, 857
MmeI TCCRAC 2 cut(s) 72, 744
MseI TTAA 1 cut(s) 1529
MslI CAYNNNNRTG 1 cut(s) 1480
MspCI CTTAAG 1 cut(s) 1528
MspR9I CCNGG 4 cut(s) 96, 768, 1410, 1641
MunI CAATTG 2 cut(s) 315, 987
MvaI CCWGG 4 cut(s) 96, 768, 1410, 1641
MvnI CGCG 2 cut(s) 173, 845
MwoI GCNNNNNNNGC 2 cut(s) 485, 1157
NdeII GATC 7 cut(s) 202, 280, 610, 874, 952, 1282, 1671
NlaIII CATG 6 cut(s) 1496, 1547, 1575, 1589, 1599, 1678
NlaIV GGNNCC 7 cut(s) 204, 223, 583, 876, 895, 1255, 1638
NmuCI GTSAC 4 cut(s) 70, 335, 742, 1007
NsbI TGCGCA 2 cut(s) 480, 1152
NspI RCATGY 1 cut(s) 1547
OliI CACNNNNGTG 1 cut(s) 1480
PaeI GCATGC 1 cut(s) 1547
PaeR7I CTCGAG 2 cut(s) 83, 755
PasI CCCWGGG 2 cut(s) 95, 767
PcsI WCGNNNNNNNCGW 6 cut(s) 36, 135, 177, 708, 807, 849
PfeI GAWTC 8 cut(s) 186, 293, 616, 858, 965, 1288, 1455, 1577
PfoI TCCNGGA 1 cut(s) 1639
PleI GAGTC 4 cut(s) 106, 184, 778, 856
PpsI GAGTC 4 cut(s) 106, 184, 778, 856
PpuMI RGGWCCY 1 cut(s) 1637
Psp124BI GAGCTC 2 cut(s) 591, 1263
Psp5II RGGWCCY 1 cut(s) 1637
Psp6I CCWGG 4 cut(s) 94, 766, 1408, 1639
PspGI CCWGG 4 cut(s) 94, 766, 1408, 1639
PspN4I GGNNCC 7 cut(s) 204, 223, 583, 876, 895, 1255, 1638
PspPI GGNCC 7 cut(s) 221, 582, 649, 893, 1254, 1321, 1637
PspPPI RGGWCCY 1 cut(s) 1637
PstNI CAGNNNCTG 2 cut(s) 214, 886
PsuI RGATCY 2 cut(s) 202, 874
RsaI GTAC 5 cut(s) 194, 527, 866, 1199, 1377
RsaNI GTAC 5 cut(s) 193, 526, 865, 1198, 1376
RseI CAYNNNNRTG 1 cut(s) 1480
SacI GAGCTC 2 cut(s) 591, 1263
SaqAI TTAA 1 cut(s) 1529
Sau3AI GATC 7 cut(s) 202, 280, 610, 874, 952, 1282, 1671
Sau96I GGNCC 7 cut(s) 221, 582, 649, 893, 1254, 1321, 1637
ScaI AGTACT 2 cut(s) 527, 1199
SchI GAGTC 4 cut(s) 106, 185, 778, 857
ScrFI CCNGG 4 cut(s) 96, 768, 1410, 1641
SduI GDGCHC 5 cut(s) 415, 591, 1087, 1263, 1564
SfaNI GCATC 2 cut(s) 266, 938
Sfr274I CTCGAG 2 cut(s) 83, 755
SinI GGWCC 7 cut(s) 221, 582, 649, 893, 1254, 1321, 1637
SlaI CTCGAG 2 cut(s) 83, 755
SmiMI CAYNNNNRTG 1 cut(s) 1480
SmlI CTYRAG 4 cut(s) 83, 755, 1444, 1528
SmoI CTYRAG 4 cut(s) 83, 755, 1444, 1528
SpeI ACTAGT 1 cut(s) 1426
SphI GCATGC 1 cut(s) 1547
SspMI CTAG 4 cut(s) 395, 1067, 1427, 1566
SstI GAGCTC 2 cut(s) 591, 1263
StyD4I CCNGG 4 cut(s) 94, 766, 1408, 1639
TaaI ACNGT 8 cut(s) 249, 351, 476, 921, 1023, 1148, 1367, 1482
TaiI ACGT 2 cut(s) 435, 1107
TaqI TCGA 8 cut(s) 84, 296, 353, 666, 756, 968, 1025, 1465
TaqII GACCGA 2 cut(s) 599, 1271
TatI WGTACW 5 cut(s) 192, 525, 864, 1197, 1375
TauI GCSGC 2 cut(s) 574, 1246
TfiI GAWTC 8 cut(s) 186, 293, 616, 858, 965, 1288, 1455, 1577
Tru1I TTAA 1 cut(s) 1529
Tru9I TTAA 1 cut(s) 1529
TscAI CASTG 5 cut(s) 376, 1048, 1370, 1485, 1587
TseFI GTSAC 4 cut(s) 70, 335, 742, 1007
TseI GCWGC 9 cut(s) 310, 515, 518, 627, 982, 1187, 1190, 1299, 1540
Tsp45I GTSAC 4 cut(s) 70, 335, 742, 1007
TspDTI ATGAA 7 cut(s) 314, 986, 1356, 1504, 1509, 1560, 1584
TspGWI ACGGA 2 cut(s) 169, 841
TspRI CASTG 5 cut(s) 376, 1048, 1370, 1485, 1587
Vha464I CTTAAG 1 cut(s) 1528
VpaK11BI GGWCC 7 cut(s) 221, 582, 649, 893, 1254, 1321, 1637
XapI RAATTY 1 cut(s) 1496
XceI RCATGY 1 cut(s) 1547
XhoI CTCGAG 2 cut(s) 83, 755
XspI CTAG 4 cut(s) 395, 1067, 1427, 1566
ZrmI AGTACT 2 cut(s) 527, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.