Rh1DG316600

Amino-transferase class IV

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004670
Physical Location & Seq
Reverse (-)
54297074 .. 54300384
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG316600.1

Sequence Viewer

Length: 1056 bp
ATGACGACTACTCCTCTCAGGTTCTTGCTCACCAACGGCGTCGTCTCCAACCCTGCCAACACTCCTCCCGTCACCACCTTCCTCGAGACCCACCCAGGGGCTTACACGACGACGCGCACTCACAACAACGCCTCATTCGTGTTGTTTTGGGATAGGCACTTGAAAAGGCTCGCGGAGTCCGTGAGAATCCTCTACAATGCCGATCCTCAGCTTCTTTTCGGACCCAACAAGACTTCGCTTCCATTACCGTCGTCTCTTGCAGCCAATTCTCTTTTGCTCCAGTCAAAGGTCAATGATTCGATGAAAAAAGTGCTGCCAATTGCTTTGGAGGGGAGGAGTGACGGGGAGGAACTGTCGATTACTACTTTGGTCAGCGGCAATTTGGGGAAATTGGGTGAGAGTGGGGACTTGGAGCCTCTTGATGTGAGCATTTACGTTGGGATTTATGTGCCTTCTGTGTTTGGTGTCAGAGGAAACGGTGCCCAGTTGGCTGTGGTGGGTCGTGGGAGAGATGTTGCTGCTGCTAAGTACTCGGATTGGGTGAGGATTAGGAAGTCTTTGGAGAGGTTGAGGCCGCCCTCAGGGACCGAGCTCTTGTTGTCCAATGATGGGGATCGGATTCTTGAAGGCAGCCTGTCAAACTTCTTTGTGGTCCGCCGAAAGCTGCTTTTTCAGGATGACAATGAAGCTAAAGAGCAAACTATCCACTGTTTTGAAGTACAGACAGCTCCTATTAGCGAGGGTGTCCTACCAGGAATTATACGCCAACTAGTCATTGAAGTATGCTTGAGCAAAGGAATCCCTTTTCGAGAAGTTGCACCACTGTGGTCAGAGCATGAATTTTGGGAAGAGGCGTTCATTACAAATAGCTTAAGACTTATGCAGCATGCGGAGATTGTTCGTGCTCCTAGTTCATGGGAATCACTGCATGGTAATTCATGGAAGGACATATCTTGGAAAGAGAAGCAGTTTGAGGAGGGTCCTGGAATGATTACTACAATACTCCAGAAGGAGATCATGGAAAAAGCAGTTTCAGAAGGATACTCTTTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

351

Amino Acids

38.96

Weight (kDa)

5.88

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 197 - 295 2e-10 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 479
AccII CGCG 2 cut(s) 115, 173
AciI CCGC 5 cut(s) 173, 375, 575, 655, 890
AclWI GGATC 2 cut(s) 197, 621
AcsI RAATTY 1 cut(s) 839
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 2 cut(s) 530, 720
AfiI CCNNNNNNNGG 5 cut(s) 96, 97, 286, 581, 609
AflII CTTAAG 1 cut(s) 871
AgsI TTSAA 4 cut(s) 163, 626, 716, 779
AhlI ACTAGT 1 cut(s) 769
AjnI CCWGG 3 cut(s) 94, 751, 982
AleI CACNNNNGTG 1 cut(s) 823
AloI GAACNNNNNNTCC 2 cut(s) 839, 871
AluBI AGCT 6 cut(s) 211, 592, 664, 689, 728, 870
AluI AGCT 6 cut(s) 211, 592, 664, 689, 728, 870
Alw21I GWGCWC 2 cut(s) 594, 907
Alw26I GTCTC 3 cut(s) 49, 80, 258
AlwI GGATC 2 cut(s) 197, 621
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 1 cut(s) 572
ApeKI GCWGC 7 cut(s) 260, 313, 518, 521, 630, 664, 883
ApoI RAATTY 1 cut(s) 839
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 4 cut(s) 221, 585, 652, 980
AsuHPI GGTGA 4 cut(s) 22, 64, 407, 553
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 4 cut(s) 221, 585, 652, 980
AxyI CCTNAGG 1 cut(s) 580
BaeGI GKGCMC 1 cut(s) 484
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 594
Bbv12I GWGCWC 2 cut(s) 594, 907
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 7 cut(s) 272, 300, 505, 508, 642, 651, 895
BccI CCATC 1 cut(s) 602
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 3 cut(s) 96, 753, 984
BciVI GTATCC 1 cut(s) 1034
BcoDI GTCTC 3 cut(s) 49, 80, 258
BcuI ACTAGT 1 cut(s) 769
BfaI CTAG 2 cut(s) 770, 909
BfrI CTTAAG 1 cut(s) 871
BfuI GTATCC 1 cut(s) 1034
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 9 cut(s) 261, 314, 376, 519, 522, 575, 631, 665, 884
BlsI GCNGC 9 cut(s) 262, 315, 377, 520, 523, 576, 632, 666, 885
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 3 cut(s) 96, 753, 984
Bme18I GGWCC 4 cut(s) 221, 585, 652, 980
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 4 cut(s) 221, 585, 652, 980
BmiI GGNNCC 5 cut(s) 223, 414, 481, 586, 981
BmrFI CCNGG 3 cut(s) 96, 753, 984
BmrI ACTGGG 1 cut(s) 478
BmuI ACTGGG 1 cut(s) 478
BpmI CTGGAG 2 cut(s) 263, 989
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 808
BsaBI GATNNNNATC 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 94, 95
BsaXI ACNNNNNCTCC 3 cut(s) 25, 338, 368
Bsc4I CCNNNNNNNGG 5 cut(s) 96, 97, 286, 581, 609
Bse1I ACTGG 2 cut(s) 280, 484
Bse21I CCTNAGG 1 cut(s) 580
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 3 cut(s) 96, 753, 984
BseDI CCNNGG 2 cut(s) 94, 95
BseGI GGATG 1 cut(s) 682
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 5 cut(s) 96, 97, 286, 581, 609
BseMII CTCAG 3 cut(s) 31, 221, 594
BseNI ACTGG 2 cut(s) 280, 484
BseRI GAGGAG 3 cut(s) 54, 349, 989
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 7 cut(s) 272, 300, 505, 508, 642, 651, 895
Bsh1236I CGCG 2 cut(s) 115, 173
BshFI GGCC 1 cut(s) 574
BshNI GGYRCC 1 cut(s) 479
BsiHKAI GWGCWC 2 cut(s) 594, 907
BsiHKCI CYCGRG 1 cut(s) 83
BslFI GGGAC 2 cut(s) 419, 598
BslI CCNNNNNNNGG 5 cut(s) 96, 97, 286, 581, 609
BsmAI GTCTC 3 cut(s) 49, 80, 258
BsmBI CGTCTC 2 cut(s) 49, 258
BsmFI GGGAC 2 cut(s) 419, 598
BsnI GGCC 1 cut(s) 574
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 3 cut(s) 484, 594, 907
Bsp143I GATC 3 cut(s) 202, 613, 1014
BspACI CCGC 5 cut(s) 173, 375, 575, 655, 890
BspANI GGCC 1 cut(s) 574
BspCNI CTCAG 3 cut(s) 30, 220, 593
BspFNI CGCG 2 cut(s) 115, 173
BspLI GGNNCC 5 cut(s) 223, 414, 481, 586, 981
BspPI GGATC 2 cut(s) 197, 621
BspT107I GGYRCC 1 cut(s) 479
BspTI CTTAAG 1 cut(s) 871
BspTNI GGTCTC 1 cut(s) 80
BsrI ACTGG 2 cut(s) 280, 484
BssECI CCNNGG 2 cut(s) 94, 95
BssMI GATC 3 cut(s) 202, 613, 1014
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 3 cut(s) 96, 753, 984
Bst4CI ACNGT 5 cut(s) 249, 354, 479, 710, 825
Bst6I CTCTTC 1 cut(s) 843
BstACI GRCGYC 1 cut(s) 39
BstAFI CTTAAG 1 cut(s) 871
BstC8I GCNNGC 2 cut(s) 171, 888
BstDEI CTNAG 4 cut(s) 17, 207, 525, 580
BstF5I GGATG 1 cut(s) 682
BstFNI CGCG 2 cut(s) 115, 173
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 3 cut(s) 205, 616, 1017
BstMAI GTCTC 3 cut(s) 49, 80, 258
BstMBI GATC 3 cut(s) 202, 613, 1014
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 3 cut(s) 96, 753, 984
BstNSI RCATGY 1 cut(s) 890
BstSCI CCNGG 3 cut(s) 94, 751, 982
BstSLI GKGCMC 1 cut(s) 484
BstUI CGCG 2 cut(s) 115, 173
BstV1I GCAGC 7 cut(s) 272, 300, 505, 508, 642, 651, 895
Bsu36I CCTNAGG 1 cut(s) 580
BsuI GTATCC 1 cut(s) 1034
BsuRI GGCC 1 cut(s) 574
BtsCI GGATG 1 cut(s) 682
BtsI GCAGTG 1 cut(s) 923
BtsIMutI CAGTG 3 cut(s) 706, 821, 923
Cac8I GCNNGC 2 cut(s) 171, 888
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 4 cut(s) 221, 585, 652, 980
CseI GACGC 2 cut(s) 28, 121
Csp6I GTAC 2 cut(s) 529, 719
CviAII CATG 6 cut(s) 836, 887, 915, 929, 939, 1018
CviQI GTAC 2 cut(s) 529, 719
DdeI CTNAG 4 cut(s) 17, 207, 525, 580
DpnI GATC 3 cut(s) 204, 615, 1016
DpnII GATC 3 cut(s) 202, 613, 1014
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
EciI GGCGGA 1 cut(s) 644
Ecl136II GAGCTC 1 cut(s) 592
Eco24I GRGCYC 1 cut(s) 594
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 4 cut(s) 221, 585, 652, 980
Eco53kI GAGCTC 1 cut(s) 592
Eco81I CCTNAGG 1 cut(s) 580
Eco88I CYCGRG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 592
EcoO109I RGGNCCY 1 cut(s) 980
EcoRII CCWGG 3 cut(s) 94, 751, 982
EcoT38I GRGCYC 1 cut(s) 594
Esp3I CGTCTC 2 cut(s) 49, 258
FaeI CATG 6 cut(s) 839, 890, 918, 932, 942, 1021
FaqI GGGAC 2 cut(s) 419, 598
FatI CATG 6 cut(s) 835, 886, 914, 928, 938, 1017
Fnu4HI GCNGC 9 cut(s) 261, 314, 376, 519, 522, 575, 631, 665, 884
FokI GGATG 1 cut(s) 689
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 9 cut(s) 261, 314, 376, 519, 522, 575, 631, 665, 884
FspBI CTAG 2 cut(s) 770, 909
GlaI GCGC 1 cut(s) 116
GluI GCNGC 9 cut(s) 261, 314, 376, 519, 522, 575, 631, 665, 884
GsuI CTGGAG 2 cut(s) 263, 989
HaeIII GGCC 1 cut(s) 574
HgaI GACGC 2 cut(s) 28, 121
HhaI GCGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 6 cut(s) 839, 890, 918, 932, 942, 1021
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HinfI GANTC 6 cut(s) 176, 186, 296, 619, 798, 920
HphI GGTGA 4 cut(s) 22, 64, 407, 553
Hpy188I TCNGA 6 cut(s) 221, 470, 535, 618, 832, 1036
Hpy188III TCNNGA 6 cut(s) 85, 419, 623, 674, 809, 1006
Hpy99I CGWCG 4 cut(s) 44, 112, 115, 253
HpyAV CCTTC 6 cut(s) 88, 462, 620, 937, 1003, 1031
HpyCH4III ACNGT 5 cut(s) 249, 354, 479, 710, 825
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 4 cut(s) 260, 818, 883, 928
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 4 cut(s) 17, 207, 525, 580
HpySE526I ACGT 1 cut(s) 435
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 6 cut(s) 839, 890, 918, 932, 942, 1021
HspAI GCGC 1 cut(s) 115
Kzo9I GATC 3 cut(s) 202, 613, 1014
LmnI GCTCC 4 cut(s) 282, 412, 733, 910
Lsp1109I GCAGC 7 cut(s) 272, 300, 505, 508, 642, 651, 895
MaeI CTAG 2 cut(s) 770, 909
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 70, 338
MalI GATC 3 cut(s) 204, 615, 1016
MboI GATC 3 cut(s) 202, 613, 1014
MboII GAAGA 1 cut(s) 860
MfeI CAATTG 1 cut(s) 318
MhlI GDGCHC 3 cut(s) 484, 594, 907
MluCI AATT 7 cut(s) 265, 318, 379, 389, 756, 839, 934
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 72
MseI TTAA 1 cut(s) 872
MslI CAYNNNNRTG 1 cut(s) 823
MspA1I CMGCKG 1 cut(s) 375
MspCI CTTAAG 1 cut(s) 871
MspR9I CCNGG 3 cut(s) 96, 753, 984
MunI CAATTG 1 cut(s) 318
MvaI CCWGG 3 cut(s) 96, 753, 984
MvnI CGCG 2 cut(s) 115, 173
MwoI GCNNNNNNNGC 1 cut(s) 488
NdeII GATC 3 cut(s) 202, 613, 1014
NlaIII CATG 6 cut(s) 839, 890, 918, 932, 942, 1021
NlaIV GGNNCC 5 cut(s) 223, 414, 481, 586, 981
NmuCI GTSAC 2 cut(s) 70, 338
NspI RCATGY 1 cut(s) 890
OliI CACNNNNGTG 1 cut(s) 823
PaeI GCATGC 1 cut(s) 890
PaeR7I CTCGAG 1 cut(s) 83
PasI CCCWGGG 1 cut(s) 95
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 177
PfeI GAWTC 5 cut(s) 186, 296, 619, 798, 920
PfoI TCCNGGA 1 cut(s) 982
PkrI GCNGC 9 cut(s) 262, 315, 377, 520, 523, 576, 632, 666, 885
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 980
Psp124BI GAGCTC 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 980
Psp6I CCWGG 3 cut(s) 94, 751, 982
PspGI CCWGG 3 cut(s) 94, 751, 982
PspN4I GGNNCC 5 cut(s) 223, 414, 481, 586, 981
PspPI GGNCC 4 cut(s) 221, 585, 652, 980
PspPPI RGGWCCY 1 cut(s) 980
RsaI GTAC 2 cut(s) 530, 720
RsaNI GTAC 2 cut(s) 529, 719
RseI CAYNNNNRTG 1 cut(s) 823
SacI GAGCTC 1 cut(s) 594
SaqAI TTAA 1 cut(s) 872
SatI GCNGC 9 cut(s) 261, 314, 376, 519, 522, 575, 631, 665, 884
Sau3AI GATC 3 cut(s) 202, 613, 1014
Sau96I GGNCC 4 cut(s) 221, 585, 652, 980
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 3 cut(s) 96, 753, 984
SduI GDGCHC 3 cut(s) 484, 594, 907
Sfr274I CTCGAG 1 cut(s) 83
SinI GGWCC 4 cut(s) 221, 585, 652, 980
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 823
SmlI CTYRAG 3 cut(s) 83, 787, 871
SmoI CTYRAG 3 cut(s) 83, 787, 871
SpeI ACTAGT 1 cut(s) 769
SphI GCATGC 1 cut(s) 890
Sse9I AATT 7 cut(s) 265, 318, 379, 389, 756, 839, 934
SsiI CCGC 5 cut(s) 173, 375, 575, 655, 890
SspMI CTAG 2 cut(s) 770, 909
SstI GAGCTC 1 cut(s) 594
StyD4I CCNGG 3 cut(s) 94, 751, 982
TaaI ACNGT 5 cut(s) 249, 354, 479, 710, 825
TaiI ACGT 1 cut(s) 438
TaqI TCGA 4 cut(s) 84, 299, 356, 808
TaqII GACCGA 1 cut(s) 602
TasI AATT 7 cut(s) 265, 318, 379, 389, 756, 839, 934
TatI WGTACW 2 cut(s) 528, 718
TauI GCSGC 2 cut(s) 378, 577
TfiI GAWTC 5 cut(s) 186, 296, 619, 798, 920
Tru1I TTAA 1 cut(s) 872
Tru9I TTAA 1 cut(s) 872
TscAI CASTG 3 cut(s) 713, 828, 930
TseFI GTSAC 2 cut(s) 70, 338
TseI GCWGC 7 cut(s) 260, 313, 518, 521, 630, 664, 883
Tsp45I GTSAC 2 cut(s) 70, 338
TspDTI ATGAA 6 cut(s) 317, 699, 847, 852, 903, 927
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 3 cut(s) 713, 828, 930
Vha464I CTTAAG 1 cut(s) 871
VpaK11BI GGWCC 4 cut(s) 221, 585, 652, 980
XapI RAATTY 1 cut(s) 839
XceI RCATGY 1 cut(s) 890
XhoI CTCGAG 1 cut(s) 83
XspI CTAG 2 cut(s) 770, 909
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.