AT3G56720

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003825
Physical Location & Seq
Forward (+)
21010632 .. 21013589
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56720.2

Sequence Viewer

Length: 1161 bp
ATGGACACCGAACTGAATTCTCCTCCGCATGATGATGGTGGTGATACCACTACCGCTTTTCGAAAGCCTTCCAATGACGGGACTAGCAGAAAATATCGCCGTCGAGCTTTAGCTGACGATGGCTCATCTTCATCTGATGGAAGTCCTGAACGTAATCAGAGCCCTAATCCAAAGCATTCTAGGAAAGATTCTGAACCAGTTCATGTGAGGAAAGAGGATAGATGGGAATCTGATCGCAGTCGTTATGGTAGAGGAGGTGTTGATTCACATAGACATGATAGGTACTCTAGGGATGATAATTACGGATATAAGCGTGATGAGTATAACAGACATGGGAGGGATGCGCGTTCTACTAGCCGTGATTCAAGAGGTGGCAGACATTCTGACCGTAGAAGAGTGGAGACTGAATATAGCAGGTTAAGAAATGACTCAGACAGAAGTTCCCATGATAAGTATAGCAACTCTGGACATAGAGTCAAAAGTAACGAGAAAGGTGAAGATTTGTCATCTGGTAGGAGACACTCAGACTCAAGAGTGGAGGATAATGAGAAAAGAGGTTCTCGCTGGGGTTTTGGTGACCGTCATTCCCGTGTTGAAAGAAAGGAACATGAGGACCCTGAGATTAGCAAGGAGAAGGAGGTTCATGTCAAATCTTCAAGAGACCGTTCTGATGGGAAATGTTTGGCTACAGAGGATCGAGATACTCATTCTAAGAAACTGAAGGGTTTCATATCAGACAAGTTTACTACTGGCAATACTAATGAAGAGAAACAGACATCAATCTTAAAGCCTTCCCCCGGTGATGTTGATGCTGCAAAAGTTGCAGCTATGCAGGCTGCTGAATTAGTGAATAAAAACCTTGTTGGAACGGGTTACCTGACAACAGATCAAAAGAAGAAGTTATTGTGGGGAAAAAAGAAAAGCACGGCTTCAGAAGAGTCTGCTCATCGTTGGGATAATGCGAGTGCGCTAATTGGTGACCCTGAACGGCAAGAAAAGTTCAACAAACTTATGGGTGTGAAAGCGAAGGTAGTAAACCAAGAGCAAAACCTGGGCGAAGTCGAGGCCGAGAAGCAGAAAGAGTTGCAGATGGATCTAGAGAAGCAGTACACAGCAGGGTTAAGGAGGAGAGATGGACGAACAGTAGGGTTAGGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMAP

Protein Analysis

386

Amino Acids

44.0

Weight (kDa)

9.4

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMAP PF15477 319 - 386 1.3e-14 Small acidic protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 405
AccII CGCG 1 cut(s) 346
AciI CCGC 2 cut(s) 26, 54
AclWI GGATC 2 cut(s) 702, 1101
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 2 cut(s) 740, 915
AfaI GTAC 2 cut(s) 284, 1109
AfiI CCNNNNNNNGG 2 cut(s) 78, 797
AgsI TTSAA 4 cut(s) 366, 596, 657, 1003
AhdI GACNNNNNGTC 1 cut(s) 473
AjnI CCWGG 1 cut(s) 1050
AluBI AGCT 3 cut(s) 107, 113, 827
AluI AGCT 3 cut(s) 107, 113, 827
Alw26I GTCTC 3 cut(s) 395, 511, 654
AlwI GGATC 2 cut(s) 702, 1101
AoxI GGCC 1 cut(s) 1065
ApeKI GCWGC 3 cut(s) 812, 824, 836
ApoI RAATTY 1 cut(s) 16
Asp700I GAANNNNTTC 3 cut(s) 67, 198, 725
AspLEI GCGC 2 cut(s) 346, 970
AspS9I GGNCC 1 cut(s) 613
AsuC2I CCSGG 1 cut(s) 798
AsuHPI GGTGA 5 cut(s) 53, 506, 587, 812, 989
AsuII TTCGAA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 613
BanII GRGCYC 1 cut(s) 164
BbvI GCAGC 3 cut(s) 799, 823, 836
BccI CCATC 7 cut(s) 29, 113, 131, 216, 665, 1084, 1127
BceAI ACGGC 4 cut(s) 84, 342, 942, 1004
BciT130I CCWGG 1 cut(s) 1052
BcnI CCSGG 1 cut(s) 798
BcoDI GTCTC 3 cut(s) 395, 511, 654
BfaI CTAG 5 cut(s) 84, 180, 288, 354, 1097
BfmI CTRYAG 1 cut(s) 687
BfuAI ACCTGC 1 cut(s) 405
BisI GCNGC 3 cut(s) 813, 825, 837
BlsI GCNGC 3 cut(s) 814, 826, 838
Bme1390I CCNGG 2 cut(s) 798, 1052
Bme18I GGWCC 1 cut(s) 613
BmeRI GACNNNNNGTC 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 613
BmiI GGNNCC 1 cut(s) 615
BmrFI CCNGG 2 cut(s) 798, 1052
BmsI GCATC 2 cut(s) 331, 799
Bpu14I TTCGAA 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 514
BpuMI CCSGG 1 cut(s) 798
BsaBI GATNNNNATC 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 654
BsaJI CCNNGG 2 cut(s) 796, 1051
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 797
Bse1I ACTGG 2 cut(s) 197, 754
Bse8I GATNNNNATC 1 cut(s) 226
BseBI CCWGG 1 cut(s) 1052
BseDI CCNNGG 2 cut(s) 796, 1051
BseGI GGATG 2 cut(s) 298, 346
BseJI GATNNNNATC 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 78, 797
BseMII CTCAG 3 cut(s) 444, 537, 609
BseNI ACTGG 2 cut(s) 197, 754
BseRI GAGGAG 3 cut(s) 12, 267, 1141
BseXI GCAGC 3 cut(s) 799, 823, 836
BseYI CCCAGC 1 cut(s) 564
Bsh1236I CGCG 1 cut(s) 346
BshFI GGCC 1 cut(s) 1067
BsiSI CCGG 1 cut(s) 798
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 78, 797
BsmAI GTCTC 3 cut(s) 395, 511, 654
BsmFI GGGAC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 1067
Bso31I GGTCTC 1 cut(s) 654
Bsp119I TTCGAA 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 4 cut(s) 232, 694, 886, 1093
BspACI CCGC 2 cut(s) 26, 54
BspANI GGCC 1 cut(s) 1067
BspCNI CTCAG 3 cut(s) 443, 536, 610
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 615
BspMI ACCTGC 1 cut(s) 405
BspPI GGATC 2 cut(s) 702, 1101
BspT104I TTCGAA 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 654
BsrI ACTGG 2 cut(s) 197, 754
BssECI CCNNGG 2 cut(s) 796, 1051
BssMI GATC 4 cut(s) 232, 694, 886, 1093
Bst2UI CCWGG 1 cut(s) 1052
Bst4CI ACNGT 4 cut(s) 389, 581, 665, 1144
Bst6I CTCTTC 3 cut(s) 388, 759, 930
BstAPI GCANNNNNTGC 1 cut(s) 821
BstBI TTCGAA 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 834
BstDEI CTNAG 4 cut(s) 430, 523, 618, 711
BstEII GGTNACC 3 cut(s) 575, 872, 977
BstF5I GGATG 2 cut(s) 298, 346
BstFNI CGCG 1 cut(s) 346
BstHHI GCGC 2 cut(s) 346, 970
BstKTI GATC 4 cut(s) 235, 697, 889, 1096
BstMAI GTCTC 3 cut(s) 395, 511, 654
BstMBI GATC 4 cut(s) 232, 694, 886, 1093
BstMWI GCNNNNNNNGC 2 cut(s) 821, 833
BstNI CCWGG 1 cut(s) 1052
BstPI GGTNACC 3 cut(s) 575, 872, 977
BstSCI CCNGG 2 cut(s) 796, 1050
BstSFI CTRYAG 1 cut(s) 687
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 3 cut(s) 799, 823, 836
BstX2I RGATCY 1 cut(s) 1093
BstYI RGATCY 1 cut(s) 1093
BsuRI GGCC 1 cut(s) 1067
BtsCI GGATG 2 cut(s) 298, 346
BveI ACCTGC 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 834
CfoI GCGC 2 cut(s) 346, 970
Cfr13I GGNCC 1 cut(s) 613
Csp6I GTAC 2 cut(s) 283, 1108
CviAII CATG 7 cut(s) 29, 203, 275, 332, 446, 608, 644
CviQI GTAC 2 cut(s) 283, 1108
DdeI CTNAG 4 cut(s) 430, 523, 618, 711
DpnI GATC 4 cut(s) 234, 696, 888, 1095
DpnII GATC 4 cut(s) 232, 694, 886, 1093
DriI GACNNNNNGTC 1 cut(s) 473
Eam1104I CTCTTC 3 cut(s) 388, 759, 930
Eam1105I GACNNNNNGTC 1 cut(s) 473
EarI CTCTTC 3 cut(s) 388, 759, 930
Eco24I GRGCYC 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 654
Eco47I GGWCC 1 cut(s) 613
Eco57I CTGAAG 2 cut(s) 740, 915
Eco91I GGTNACC 3 cut(s) 575, 872, 977
EcoO109I RGGNCCY 1 cut(s) 613
EcoO65I GGTNACC 3 cut(s) 575, 872, 977
EcoRI GAATTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 1050
EcoT38I GRGCYC 1 cut(s) 164
FaeI CATG 7 cut(s) 32, 206, 278, 335, 449, 611, 647
FalI AAGNNNNNCTT 2 cut(s) 913, 945
FaqI GGGAC 1 cut(s) 94
FatI CATG 7 cut(s) 28, 202, 274, 331, 445, 607, 643
Fnu4HI GCNGC 3 cut(s) 813, 825, 837
FokI GGATG 2 cut(s) 305, 353
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 3 cut(s) 813, 825, 837
FspBI CTAG 5 cut(s) 84, 180, 288, 354, 1097
GlaI GCGC 2 cut(s) 345, 969
GluI GCNGC 3 cut(s) 813, 825, 837
GsaI CCCAGC 1 cut(s) 568
HaeIII GGCC 1 cut(s) 1067
HapII CCGG 1 cut(s) 798
HhaI GCGC 2 cut(s) 346, 970
Hin1II CATG 7 cut(s) 32, 206, 278, 335, 449, 611, 647
Hin6I GCGC 2 cut(s) 344, 968
HinP1I GCGC 2 cut(s) 344, 968
HinfI GANTC 8 cut(s) 188, 227, 263, 362, 428, 474, 527, 938
HpaII CCGG 1 cut(s) 798
HphI GGTGA 5 cut(s) 53, 506, 587, 812, 989
Hpy166II GTNNAC 3 cut(s) 744, 1036, 1110
Hpy188III TCNNGA 7 cut(s) 146, 366, 465, 531, 657, 698, 1097
Hpy8I GTNNAC 3 cut(s) 744, 1036, 1110
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 5 cut(s) 78, 628, 715, 801, 1021
HpyCH4III ACNGT 4 cut(s) 389, 581, 665, 1144
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 4 cut(s) 815, 824, 832, 1087
HpyF10VI GCNNNNNNNGC 2 cut(s) 821, 833
HpyF3I CTNAG 4 cut(s) 430, 523, 618, 711
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 7 cut(s) 32, 206, 278, 335, 449, 611, 647
HspAI GCGC 2 cut(s) 344, 968
Kzo9I GATC 4 cut(s) 232, 694, 886, 1093
Lsp1109I GCAGC 3 cut(s) 799, 823, 836
LweI GCATC 2 cut(s) 331, 799
MaeI CTAG 5 cut(s) 84, 180, 288, 354, 1097
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 4 cut(s) 482, 575, 872, 977
MalI GATC 4 cut(s) 234, 696, 888, 1095
MboI GATC 4 cut(s) 232, 694, 886, 1093
MboII GAAGA 7 cut(s) 120, 405, 509, 645, 776, 907, 947
MflI RGATCY 1 cut(s) 1093
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 4 cut(s) 16, 298, 842, 972
MlyI GAGTC 4 cut(s) 422, 483, 521, 947
MmeI TCCRAC 1 cut(s) 844
MroXI GAANNNNTTC 3 cut(s) 67, 198, 725
MseI TTAA 3 cut(s) 419, 785, 1121
MslI CAYNNNNRTG 3 cut(s) 33, 273, 588
MspI CCGG 1 cut(s) 798
MspR9I CCNGG 2 cut(s) 798, 1052
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 1052
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 821, 833
NciI CCSGG 1 cut(s) 798
NdeII GATC 4 cut(s) 232, 694, 886, 1093
NlaIII CATG 7 cut(s) 32, 206, 278, 335, 449, 611, 647
NlaIV GGNNCC 1 cut(s) 615
NmeAIII GCCGAG 1 cut(s) 1093
NmuCI GTSAC 2 cut(s) 575, 977
NspV TTCGAA 1 cut(s) 61
PctI GAATGC 1 cut(s) 175
PdmI GAANNNNTTC 3 cut(s) 67, 198, 725
PfeI GAWTC 4 cut(s) 188, 227, 263, 362
PkrI GCNGC 3 cut(s) 814, 826, 838
PleI GAGTC 4 cut(s) 422, 482, 521, 946
PpsI GAGTC 4 cut(s) 422, 482, 521, 946
PpuMI RGGWCCY 1 cut(s) 613
Psp5II RGGWCCY 1 cut(s) 613
Psp6I CCWGG 1 cut(s) 1050
PspEI GGTNACC 3 cut(s) 575, 872, 977
PspFI CCCAGC 1 cut(s) 564
PspGI CCWGG 1 cut(s) 1050
PspN4I GGNNCC 1 cut(s) 615
PspPI GGNCC 1 cut(s) 613
PspPPI RGGWCCY 1 cut(s) 613
PsuI RGATCY 1 cut(s) 1093
RsaI GTAC 2 cut(s) 284, 1109
RsaNI GTAC 2 cut(s) 283, 1108
RseI CAYNNNNRTG 3 cut(s) 33, 273, 588
SaqAI TTAA 3 cut(s) 419, 785, 1121
SatI GCNGC 3 cut(s) 813, 825, 837
Sau3AI GATC 4 cut(s) 232, 694, 886, 1093
Sau96I GGNCC 1 cut(s) 613
SchI GAGTC 4 cut(s) 422, 483, 521, 947
ScrFI CCNGG 2 cut(s) 798, 1052
SduI GDGCHC 1 cut(s) 164
SfaNI GCATC 2 cut(s) 331, 799
SfcI CTRYAG 1 cut(s) 687
SfuI TTCGAA 1 cut(s) 61
SinI GGWCC 1 cut(s) 613
SmiMI CAYNNNNRTG 3 cut(s) 33, 273, 588
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 4 cut(s) 16, 298, 842, 972
SsiI CCGC 2 cut(s) 26, 54
SspMI CTAG 5 cut(s) 84, 180, 288, 354, 1097
StyD4I CCNGG 2 cut(s) 796, 1050
TaaI ACNGT 4 cut(s) 389, 581, 665, 1144
TaiI ACGT 1 cut(s) 154
TaqI TCGA 4 cut(s) 61, 103, 697, 1062
TasI AATT 4 cut(s) 16, 298, 842, 972
TatI WGTACW 1 cut(s) 1107
TfiI GAWTC 4 cut(s) 188, 227, 263, 362
Tru1I TTAA 3 cut(s) 419, 785, 1121
Tru9I TTAA 3 cut(s) 419, 785, 1121
TseFI GTSAC 2 cut(s) 575, 977
TseI GCWGC 3 cut(s) 812, 824, 836
Tsp45I GTSAC 2 cut(s) 575, 977
TspDTI ATGAA 5 cut(s) 120, 191, 632, 718, 777
TspGWI ACGGA 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 613
XapI RAATTY 1 cut(s) 16
XbaI TCTAGA 1 cut(s) 1096
XmnI GAANNNNTTC 3 cut(s) 67, 198, 725
XspI CTAG 5 cut(s) 84, 180, 288, 354, 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.