Rroxscaffold_7G00192520

Small acidic protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003825
Physical Location & Seq
Reverse (-)
33732782 .. 33738441
5660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192520.1

Sequence Viewer

Length: 1377 bp
ATGGATTCAAACTTGGACTCTCCATTCACAGACAAGGGGACTGCATTTTCCAAGCCTTCAAAAGATAAAGTTAACAGGAATTATCGGCCTCGTTCTCCAGTTAGTGGGTCATCTTCATCTGATGGGAGTCCTGCGCATAATAACTGCTCTAGCCCAAAAGTTACAATGGGAGATCCTGGAAAAGTCTCTGAACATCAACCGAGAAGGATAGATGATTGGAGAGAATTAAATAGGGATTCCGAGAGGAGCTATTGTGGAAGAAGCAGTGATTCCTACAGGCATTCTGATAGGCAGTCCAGAAATTCAAAGGGCCACTATGGGCAGGCTGACCACATCAAAAACGACAAACATGCAGATGATGAAGAAAGAACTAATCAGAAGTTATCTTCTCGTTCGGATAGGGAATCAAGGGGCAGTGCTCATTTTGATAATGTTAGGTCGAGAGACTATTCACGACATTTCGACAAAAATTCTCATGATAAATATGATGGTTCTGAACATAGGAGCAAGGACAAAGAGAGAGGATCTAAATTTCTTGAGTACCAGAAATATAAAGATGACTCATTGTCAGAAAGAGTTGGATCTGGTAGAAGTCATGGACGTGTCGAAGATATGGAAAGGGAGAGAGAGAGGCATAAAGTTGACAGAGACTCTCAGGATGAGAAAAGAGATCATCGTAGGAGTTCGGGATATTTTAGAAGTTATAAGAGTGATTTGAAGGAAATGGATGATGAAAGCCTTGCAAGAGATCAAAGGAAGAAATATGATGATATCGAAACTAAGAGGAGCAAGGACCGAGTGATTAAAGAACCAACAGAGTGTTCTGAGAATAAAGATAAATTTAGGAGTGAAGATCAAGAATCTGCTGCGAAACGACCAAAGTTTTTTAACCCGGAGAAGGGCATTGCTGGTCGGAAAGATGTTTCCAAGTTCACAACTACATCTGATGGAAGGGAGTCTTCAAGTTCCAAGCAAGCTCAAGATGGTAAAGTGGAGAATGACATAAATGCTGCAAAAGTTGCTGCAATGAAAGCTGCTGAATTGGTTAATAGGAATCTTGCTGGTGCGGGTCCTGTGGGTTGCATGACTGCTGACCAAAAGAAGAAGCTGCTGTGGGGCAACAAAAAGAACACAACTGCAGAAGAGGCTGGTCATCGTTGGGACACGGCTTTGTTCCCTGACCGGGAAAGACAAGAAAAATTCAAAAAACTCATGGGTGTGAAGGGCGAATTGAAGGTGGAGGACAACCCCGACAACCAAGAGGGCACCAATCTTCTCAGAGCCGAGAAGCAGAAGGAACTCCAGCAGGATTTGGAGAAGCAGTATACAGCTGGACTGCGAAGAAGAGATGGCCGCACTGTTGGTTTAGGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMAP

Protein Analysis

458

Amino Acids

52.53

Weight (kDa)

9.25

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMAP PF15477 387 - 457 2.9e-17 Small acidic protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 705
Acc16I TGCGCA 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 1265
AccB7I CCANNNNNTGG 1 cut(s) 104
AccI GTMKAC 1 cut(s) 1325
AciI CCGC 2 cut(s) 1067, 1354
AclWI GGATC 3 cut(s) 167, 532, 589
AcoI YGGCCR 1 cut(s) 1351
AcsI RAATTY 5 cut(s) 301, 469, 530, 839, 1199
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 4 cut(s) 104, 898, 899, 1183
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 7 cut(s) 9, 60, 306, 718, 963, 1204, 1234
AhdI GACNNNNNGTC 1 cut(s) 565
AjiI CACGTC 1 cut(s) 602
AjnI CCWGG 1 cut(s) 175
AjuI GAANNNNNNNTTGG 2 cut(s) 805, 837
AluBI AGCT 5 cut(s) 249, 977, 1034, 1108, 1331
AluI AGCT 5 cut(s) 249, 977, 1034, 1108, 1331
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 3 cut(s) 190, 438, 642
AlwI GGATC 3 cut(s) 167, 532, 589
AoxI GGCC 3 cut(s) 86, 310, 1351
ApeKI GCWGC 5 cut(s) 866, 1010, 1022, 1034, 1108
ApoI RAATTY 5 cut(s) 301, 469, 530, 839, 1199
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 3 cut(s) 310, 793, 1070
AsuC2I CCSGG 2 cut(s) 893, 1184
AvaII GGWCC 2 cut(s) 793, 1070
BaeGI GKGCMC 1 cut(s) 1268
BanI GGYRCC 1 cut(s) 1265
BbsI GAAGAC 1 cut(s) 951
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 5 cut(s) 853, 997, 1009, 1021, 1095
BccI CCATC 5 cut(s) 116, 482, 941, 977, 1343
BceAI ACGGC 1 cut(s) 1182
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 1 cut(s) 177
BcnI CCSGG 2 cut(s) 893, 1184
BcoDI GTCTC 3 cut(s) 190, 438, 642
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 2 cut(s) 274, 1137
BisI GCNGC 6 cut(s) 867, 1011, 1023, 1035, 1109, 1354
BlsI GCNGC 6 cut(s) 868, 1012, 1024, 1036, 1110, 1355
Bme1390I CCNGG 3 cut(s) 177, 893, 1184
Bme18I GGWCC 2 cut(s) 793, 1070
BmeRI GACNNNNNGTC 1 cut(s) 565
BmgBI CACGTC 1 cut(s) 602
BmgT120I GGNCC 3 cut(s) 310, 793, 1070
BmiI GGNNCC 2 cut(s) 1071, 1267
BmrFI CCNGG 3 cut(s) 177, 893, 1184
BpiI GAAGAC 1 cut(s) 951
BpmI CTGGAG 2 cut(s) 81, 1286
BpuEI CTTGAG 2 cut(s) 557, 963
BpuMI CCSGG 2 cut(s) 893, 1184
BsaXI ACNNNNNCTCC 4 cut(s) 238, 268, 1307, 1337
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 898, 899, 1183
Bse1I ACTGG 1 cut(s) 98
Bse3DI GCAATG 2 cut(s) 903, 1032
BseBI CCWGG 1 cut(s) 177
BseGI GGATG 2 cut(s) 664, 733
BseLI CCNNNNNNNGG 4 cut(s) 104, 898, 899, 1183
BseMI GCAATG 2 cut(s) 903, 1032
BseMII CTCAG 3 cut(s) 668, 816, 1291
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 2 cut(s) 259, 799
BseSI GKGCMC 1 cut(s) 1268
BseXI GCAGC 5 cut(s) 853, 997, 1009, 1021, 1095
BshFI GGCC 3 cut(s) 88, 312, 1353
BshNI GGYRCC 1 cut(s) 1265
BsiHKAI GWGCWC 1 cut(s) 421
BsiSI CCGG 2 cut(s) 893, 1183
BslFI GGGAC 2 cut(s) 52, 1175
BslI CCNNNNNNNGG 4 cut(s) 104, 898, 899, 1183
BsmAI GTCTC 3 cut(s) 190, 438, 642
BsmFI GGGAC 2 cut(s) 52, 1175
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 3 cut(s) 88, 312, 1353
Bsp1286I GDGCHC 2 cut(s) 421, 1268
Bsp143I GATC 6 cut(s) 172, 524, 581, 670, 748, 853
BspACI CCGC 2 cut(s) 1067, 1354
BspANI GGCC 3 cut(s) 88, 312, 1353
BspCNI CTCAG 3 cut(s) 667, 817, 1290
BspHI TCATGA 1 cut(s) 475
BspLI GGNNCC 2 cut(s) 1071, 1267
BspMAI CTGCAG 1 cut(s) 1141
BspPI GGATC 3 cut(s) 167, 532, 589
BspT107I GGYRCC 1 cut(s) 1265
BsrDI GCAATG 2 cut(s) 903, 1032
BsrI ACTGG 1 cut(s) 98
BssMI GATC 6 cut(s) 172, 524, 581, 670, 748, 853
BssNAI GTATAC 1 cut(s) 1326
Bst1107I GTATAC 1 cut(s) 1326
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 1360
Bst6I CTCTTC 2 cut(s) 1137, 1339
BstAPI GCANNNNNTGC 1 cut(s) 1019
BstC8I GCNNGC 2 cut(s) 324, 975
BstDEI CTNAG 4 cut(s) 654, 780, 825, 1277
BstF5I GGATG 2 cut(s) 664, 733
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 6 cut(s) 175, 527, 584, 673, 751, 856
BstMAI GTCTC 3 cut(s) 190, 438, 642
BstMBI GATC 6 cut(s) 172, 524, 581, 670, 748, 853
BstMWI GCNNNNNNNGC 3 cut(s) 1019, 1031, 1145
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 3 cut(s) 175, 891, 1182
BstSFI CTRYAG 2 cut(s) 274, 1137
BstSLI GKGCMC 1 cut(s) 1268
BstV1I GCAGC 5 cut(s) 853, 997, 1009, 1021, 1095
BstV2I GAAGAC 1 cut(s) 951
BstX2I RGATCY 3 cut(s) 172, 524, 581
BstYI RGATCY 3 cut(s) 172, 524, 581
BstZ17I GTATAC 1 cut(s) 1326
BsuRI GGCC 3 cut(s) 88, 312, 1353
BtrI CACGTC 1 cut(s) 602
BtsCI GGATG 2 cut(s) 664, 733
BtsI GCAGTG 2 cut(s) 271, 421
BtsIMutI CAGTG 3 cut(s) 271, 421, 1356
Cac8I GCNNGC 2 cut(s) 324, 975
CciI TCATGA 1 cut(s) 475
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 3 cut(s) 310, 793, 1070
Csp6I GTAC 1 cut(s) 541
CviAII CATG 5 cut(s) 350, 476, 596, 1084, 1213
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 4 cut(s) 654, 780, 825, 1277
DpnI GATC 6 cut(s) 174, 526, 583, 672, 750, 855
DpnII GATC 6 cut(s) 172, 524, 581, 670, 748, 853
DriI GACNNNNNGTC 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 1351
Eam1104I CTCTTC 2 cut(s) 1137, 1339
Eam1105I GACNNNNNGTC 1 cut(s) 565
EarI CTCTTC 2 cut(s) 1137, 1339
Eco32I GATATC 1 cut(s) 772
Eco47I GGWCC 2 cut(s) 793, 1070
EcoO109I RGGNCCY 1 cut(s) 1070
EcoRII CCWGG 1 cut(s) 175
EcoRV GATATC 1 cut(s) 772
FaeI CATG 5 cut(s) 353, 479, 599, 1087, 1216
FalI AAGNNNNNCTT 2 cut(s) 943, 975
FaqI GGGAC 2 cut(s) 52, 1175
FatI CATG 5 cut(s) 349, 475, 595, 1083, 1212
FauI CCCGC 1 cut(s) 1060
FblI GTMKAC 1 cut(s) 1325
Fnu4HI GCNGC 6 cut(s) 867, 1011, 1023, 1035, 1109, 1354
FokI GGATG 2 cut(s) 671, 740
Fsp4HI GCNGC 6 cut(s) 867, 1011, 1023, 1035, 1109, 1354
FspBI CTAG 1 cut(s) 150
FspI TGCGCA 1 cut(s) 135
GlaI GCGC 1 cut(s) 135
GluI GCNGC 6 cut(s) 867, 1011, 1023, 1035, 1109, 1354
GsuI CTGGAG 2 cut(s) 81, 1286
HaeIII GGCC 3 cut(s) 88, 312, 1353
HapII CCGG 2 cut(s) 893, 1183
HhaI GCGC 1 cut(s) 136
Hin1II CATG 5 cut(s) 353, 479, 599, 1087, 1216
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HincII GTYRAC 2 cut(s) 73, 643
HindII GTYRAC 2 cut(s) 73, 643
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 2 cut(s) 893, 1183
Hpy166II GTNNAC 4 cut(s) 73, 643, 933, 1326
Hpy188III TCNNGA 9 cut(s) 297, 441, 453, 476, 536, 656, 687, 857, 980
Hpy8I GTNNAC 4 cut(s) 73, 643, 933, 1326
HpyAV CCTTC 8 cut(s) 66, 198, 712, 892, 945, 1216, 1228, 1288
HpyCH4III ACNGT 1 cut(s) 1360
HpyCH4IV ACGT 1 cut(s) 601
HpyCH4V TGCA 7 cut(s) 44, 353, 743, 1013, 1025, 1083, 1139
HpyF10VI GCNNNNNNNGC 3 cut(s) 1019, 1031, 1145
HpyF3I CTNAG 4 cut(s) 654, 780, 825, 1277
HpySE526I ACGT 1 cut(s) 601
Hsp92II CATG 5 cut(s) 353, 479, 599, 1087, 1216
HspAI GCGC 1 cut(s) 134
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 6 cut(s) 172, 524, 581, 670, 748, 853
LmnI GCTCC 3 cut(s) 246, 504, 786
Lsp1109I GCAGC 5 cut(s) 853, 997, 1009, 1021, 1095
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 1 cut(s) 160
MalI GATC 6 cut(s) 174, 526, 583, 672, 750, 855
MboI GATC 6 cut(s) 172, 524, 581, 670, 748, 853
MflI RGATCY 3 cut(s) 172, 524, 581
MhlI GDGCHC 2 cut(s) 421, 1268
MluCI AATT 9 cut(s) 79, 224, 301, 469, 530, 839, 1040, 1199, 1229
MlyI GAGTC 5 cut(s) 11, 136, 554, 644, 965
MmeI TCCRAC 2 cut(s) 559, 893
MnlI CCTC 8 cut(s) 99, 237, 515, 624, 777, 1138, 1234, 1255
MseI TTAA 6 cut(s) 72, 227, 804, 888, 1047, 1375
MslI CAYNNNNRTG 3 cut(s) 354, 600, 1217
MspA1I CMGCKG 1 cut(s) 1331
MspI CCGG 2 cut(s) 893, 1183
MspR9I CCNGG 3 cut(s) 177, 893, 1184
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 1019, 1031, 1145
NciI CCSGG 2 cut(s) 893, 1184
NdeII GATC 6 cut(s) 172, 524, 581, 670, 748, 853
NlaIII CATG 5 cut(s) 353, 479, 599, 1087, 1216
NlaIV GGNNCC 2 cut(s) 1071, 1267
NmeAIII GCCGAG 1 cut(s) 1309
NsbI TGCGCA 1 cut(s) 135
NspI RCATGY 1 cut(s) 353
PagI TCATGA 1 cut(s) 475
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 6 cut(s) 5, 236, 269, 404, 860, 1054
PflMI CCANNNNNTGG 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 6 cut(s) 868, 1012, 1024, 1036, 1110, 1355
PleI GAGTC 5 cut(s) 11, 135, 554, 644, 964
PpsI GAGTC 5 cut(s) 11, 135, 554, 644, 964
PpuMI RGGWCCY 1 cut(s) 1070
PsiI TTATAA 1 cut(s) 705
Psp5II RGGWCCY 1 cut(s) 1070
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 1071, 1267
PspPI GGNCC 3 cut(s) 310, 793, 1070
PspPPI RGGWCCY 1 cut(s) 1070
PstI CTGCAG 1 cut(s) 1141
PsuI RGATCY 3 cut(s) 172, 524, 581
PvuII CAGCTG 1 cut(s) 1331
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 3 cut(s) 354, 600, 1217
SaqAI TTAA 6 cut(s) 72, 227, 804, 888, 1047, 1375
SatI GCNGC 6 cut(s) 867, 1011, 1023, 1035, 1109, 1354
Sau3AI GATC 6 cut(s) 172, 524, 581, 670, 748, 853
Sau96I GGNCC 3 cut(s) 310, 793, 1070
SchI GAGTC 5 cut(s) 11, 136, 554, 644, 965
ScrFI CCNGG 3 cut(s) 177, 893, 1184
SduI GDGCHC 2 cut(s) 421, 1268
SetI ASST 9 cut(s) 251, 440, 604, 979, 1036, 1110, 1239, 1333, 1372
SfcI CTRYAG 2 cut(s) 274, 1137
SinI GGWCC 2 cut(s) 793, 1070
SmiMI CAYNNNNRTG 3 cut(s) 354, 600, 1217
SmlI CTYRAG 2 cut(s) 536, 978
SmoI CTYRAG 2 cut(s) 536, 978
Sse9I AATT 9 cut(s) 79, 224, 301, 469, 530, 839, 1040, 1199, 1229
SsiI CCGC 2 cut(s) 1067, 1354
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 175, 891, 1182
TaaI ACNGT 1 cut(s) 1360
TaiI ACGT 1 cut(s) 604
TaqI TCGA 4 cut(s) 440, 462, 606, 774
TaqII GACCGA 1 cut(s) 810
TasI AATT 9 cut(s) 79, 224, 301, 469, 530, 839, 1040, 1199, 1229
TauI GCSGC 1 cut(s) 1356
TfiI GAWTC 6 cut(s) 5, 236, 269, 404, 860, 1054
Tru1I TTAA 6 cut(s) 72, 227, 804, 888, 1047, 1375
Tru9I TTAA 6 cut(s) 72, 227, 804, 888, 1047, 1375
TscAI CASTG 3 cut(s) 271, 421, 1363
TseI GCWGC 5 cut(s) 866, 1010, 1022, 1034, 1108
TspDTI ATGAA 4 cut(s) 105, 375, 747, 1043
TspRI CASTG 3 cut(s) 271, 421, 1363
Van91I CCANNNNNTGG 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 793, 1070
XapI RAATTY 5 cut(s) 301, 469, 530, 839, 1199
XceI RCATGY 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 1325
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.