Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000201.1

Orthogroup ID

OG0003825

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4656

Gene Structure 4656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000201.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1343 bp

ggagtcctgagcataataacagctctagcccaaaacttgcaatgggagatcctggaaaagtctctgaacatcaaccgagaaggatagatgattggagagaattaaatagggattcagagaggagctattgtggaagaagcagtgattcctacaggcattctgataggcagtccagaaattcaaagggctactatgggcaggctgactacatcaaaaacgacaagcatgcagaagatgaagaaagaactaatcagaagttatcttctcgttcggatagggaatcaaggggcagtgctcattttgataatgttaggtcaagaaactattcacgacatttcgacaaaaattctcgtgataaatatgatggttctgaacataggagcaaggacaaagagagaggatctaaatttcttgagtaccagaaatataaagatgactcattgtcagaaagagttggatctggtagaagtcatggacatgtcgaagatatggaaagggagaaagataggcataaagttgacagagattctcaggatgagaaaagagatcatcgtaggagtttgggatattttagaagtgaacgaaatctctcctatgaagaatcgagggggcatcgcagtggctcaatttccaggagagatgatagtaaacatcgcgagagtgaaggttataagagtgatttgaaggaaatggatgatgaaaagcttgcgagagatcaaaggaagaaatatgatgatattgaaactaagaggagcaaggaccgagtcattaaagagccaacagagcgttctgataatgaagataaatttaggggtgaagatcaagaatctgctgcgaaacgaccaaagttttttaacctggagaagggcattgctggtcggaaagatgtttccaagttcacaactacatctgatggaagagagtcgtcaagttccaagcaagttcaagatggtaaaatggagaatgacataaatgctgcaaaagttgctgcaatgaaagctgctgaattggttaataggaaccttgctggtgcgggtcctgtgggttgcatgactgctgaccaaaagaaaaagctgctgtggggcaacaaaaagaacacaactgcggaagaggctggtcaccgttgggacacggctttgttccctgaccgggaaagacaagaaaaattcaaaaaactcatgggtgtgaaggccgaattgaaggtggagcacagccccgacaaccaagagggcaccaatcttctcagagccgagaagcagaaggaactccagcaggatttggagaagcagtatacagctggactgcgaagaagagatggccgcactgttggtttaggtctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMAP

Protein Analysis

446

Amino Acids

51.73

Weight (kDa)

9.26

Isoelectric Point (pI)

56.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720
fragaria_vesca	FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070
malus_domestica	MD14G1089900.v1.1
prunus_persica	Prupe.7G034100_v2.0.a1
pyrus_communis	pycom12g08390
rosa_chinensis	RchiOBHm_Chr6g0276151
rosa_laevigata	RLG00000013413
rosa_multiflora	Rmu_ssc0000201.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192520
rosa_rugosa	Rorug06G0098300 Rorug06G0098400 Rorug06G0098500
rosa_samantha	Rh6AG210300 Rh6BG214400 Rh6BG214500 Rh6CG217200 Rh6DG206500 Rh6DG206700
rosa_wichuraiana	Rw6G018320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	1231
AccI	GTMKAC	1 cut(s)	1291
AccII	CGCG	1 cut(s)	656
AciI	CCGC	3 cut(s)	1033, 1105, 1320
AclWI	GGATC	3 cut(s)	43, 408, 465
AcoI	YGGCCR	1 cut(s)	1317
AcsI	RAATTY	5 cut(s)	177, 345, 406, 805, 1165
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	2 cut(s)	864, 1149
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	6 cut(s)	182, 684, 742, 946, 1170, 1200
AhdI	GACNNNNNGTC	1 cut(s)	441
AjnI	CCWGG	3 cut(s)	51, 631, 857
AjuI	GAANNNNNNNTTGG	2 cut(s)	771, 803
AluBI	AGCT	6 cut(s)	23, 125, 705, 1000, 1074, 1297
AluI	AGCT	6 cut(s)	23, 125, 705, 1000, 1074, 1297
Alw21I	GWGCWC	2 cut(s)	297, 1211
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	3 cut(s)	43, 408, 465
AoxI	GGCC	2 cut(s)	1190, 1317
ApeKI	GCWGC	5 cut(s)	832, 976, 988, 1000, 1074
ApoI	RAATTY	5 cut(s)	177, 345, 406, 805, 1165
Asp700I	GAANNNNTTC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	759, 1036
AsuC2I	CCSGG	1 cut(s)	1150
AsuHPI	GGTGA	2 cut(s)	826, 1111
AvaII	GGWCC	2 cut(s)	759, 1036
BaeGI	GKGCMC	1 cut(s)	1234
BanI	GGYRCC	1 cut(s)	1231
BauI	CACGAG	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	297, 1211
BbvI	GCAGC	5 cut(s)	819, 963, 975, 987, 1061
BccI	CCATC	4 cut(s)	358, 907, 943, 1309
BceAI	ACGGC	1 cut(s)	1148
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciT130I	CCWGG	3 cut(s)	53, 633, 859
BcnI	CCSGG	1 cut(s)	1150
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	6 cut(s)	833, 977, 989, 1001, 1075, 1320
BlsI	GCNGC	6 cut(s)	834, 978, 990, 1002, 1076, 1321
Bme1390I	CCNGG	4 cut(s)	53, 633, 859, 1150
Bme18I	GGWCC	2 cut(s)	759, 1036
BmeRI	GACNNNNNGTC	1 cut(s)	441
BmgT120I	GGNCC	2 cut(s)	759, 1036
BmiI	GGNNCC	3 cut(s)	1021, 1037, 1233
BmrFI	CCNGG	4 cut(s)	53, 633, 859, 1150
BmsI	GCATC	1 cut(s)	621
BpmI	CTGGAG	2 cut(s)	880, 1252
Bpu10I	CCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	1150
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 1273, 1303
Bsc4I	CCNNNNNNNGG	2 cut(s)	864, 1149
Bse3DI	GCAATG	3 cut(s)	47, 869, 998
BseBI	CCWGG	3 cut(s)	53, 633, 859
BseGI	GGATG	2 cut(s)	540, 699
BseLI	CCNNNNNNNGG	2 cut(s)	864, 1149
BseMI	GCAATG	3 cut(s)	47, 869, 998
BseMII	CTCAG	2 cut(s)	544, 1257
BseRI	GAGGAG	2 cut(s)	135, 765
BseSI	GKGCMC	1 cut(s)	1234
BseXI	GCAGC	5 cut(s)	819, 963, 975, 987, 1061
Bsh1236I	CGCG	1 cut(s)	656
BshFI	GGCC	2 cut(s)	1192, 1319
BshNI	GGYRCC	1 cut(s)	1231
BsiHKAI	GWGCWC	2 cut(s)	297, 1211
BsiSI	CCGG	1 cut(s)	1149
BslFI	GGGAC	1 cut(s)	1141
BslI	CCNNNNNNNGG	2 cut(s)	864, 1149
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	1141
BsmI	GAATGC	1 cut(s)	156
BsnI	GGCC	2 cut(s)	1192, 1319
Bsp1286I	GDGCHC	3 cut(s)	297, 1211, 1234
Bsp143I	GATC	6 cut(s)	48, 400, 457, 546, 714, 819
Bsp68I	TCGCGA	1 cut(s)	656
BspACI	CCGC	3 cut(s)	1033, 1105, 1320
BspANI	GGCC	2 cut(s)	1192, 1319
BspCNI	CTCAG	2 cut(s)	543, 1256
BspFNI	CGCG	1 cut(s)	656
BspLI	GGNNCC	3 cut(s)	1021, 1037, 1233
BspPI	GGATC	3 cut(s)	43, 408, 465
BspT107I	GGYRCC	1 cut(s)	1231
BsrDI	GCAATG	3 cut(s)	47, 869, 998
BssMI	GATC	6 cut(s)	48, 400, 457, 546, 714, 819
BssNAI	GTATAC	1 cut(s)	1292
BssSI	CACGAG	1 cut(s)	350
Bst1107I	GTATAC	1 cut(s)	1292
Bst2BI	CACGAG	1 cut(s)	350
Bst2UI	CCWGG	3 cut(s)	53, 633, 859
Bst4CI	ACNGT	2 cut(s)	1123, 1326
Bst6I	CTCTTC	3 cut(s)	912, 1103, 1305
BstAPI	GCANNNNNTGC	1 cut(s)	985
BstC8I	GCNNGC	3 cut(s)	200, 227, 707
BstDEI	CTNAG	4 cut(s)	8, 530, 746, 1243
BstEII	GGTNACC	1 cut(s)	1117
BstENI	CCTNNNNNAGG	1 cut(s)	862
BstF5I	GGATG	2 cut(s)	540, 699
BstFNI	CGCG	1 cut(s)	656
BstKTI	GATC	6 cut(s)	51, 403, 460, 549, 717, 822
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	6 cut(s)	48, 400, 457, 546, 714, 819
BstMWI	GCNNNNNNNGC	4 cut(s)	783, 985, 997, 1111
BstNI	CCWGG	3 cut(s)	53, 633, 859
BstNSI	RCATGY	2 cut(s)	229, 481
BstPI	GGTNACC	1 cut(s)	1117
BstSCI	CCNGG	4 cut(s)	51, 631, 857, 1148
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	1234
BstUI	CGCG	1 cut(s)	656
BstV1I	GCAGC	5 cut(s)	819, 963, 975, 987, 1061
BstX2I	RGATCY	3 cut(s)	48, 400, 457
BstYI	RGATCY	3 cut(s)	48, 400, 457
BstZ17I	GTATAC	1 cut(s)	1292
BsuRI	GGCC	2 cut(s)	1192, 1319
BtgZI	GCGATG	2 cut(s)	598, 637
BtsCI	GGATG	2 cut(s)	540, 699
BtsI	GCAGTG	3 cut(s)	147, 297, 624
BtsIMutI	CAGTG	4 cut(s)	147, 297, 624, 1322
BtuMI	TCGCGA	1 cut(s)	656
Cac8I	GCNNGC	3 cut(s)	200, 227, 707
Cfr13I	GGNCC	2 cut(s)	759, 1036
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	5 cut(s)	226, 472, 478, 1050, 1179
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	4 cut(s)	8, 530, 746, 1243
DpnI	GATC	6 cut(s)	50, 402, 459, 548, 716, 821
DpnII	GATC	6 cut(s)	48, 400, 457, 546, 714, 819
DriI	GACNNNNNGTC	1 cut(s)	441
EaeI	YGGCCR	1 cut(s)	1317
Eam1104I	CTCTTC	3 cut(s)	912, 1103, 1305
Eam1105I	GACNNNNNGTC	1 cut(s)	441
EarI	CTCTTC	3 cut(s)	912, 1103, 1305
Eco47I	GGWCC	2 cut(s)	759, 1036
Eco91I	GGTNACC	1 cut(s)	1117
EcoNI	CCTNNNNNAGG	1 cut(s)	862
EcoO109I	RGGNCCY	1 cut(s)	1036
EcoO65I	GGTNACC	1 cut(s)	1117
EcoRII	CCWGG	3 cut(s)	51, 631, 857
FaeI	CATG	5 cut(s)	229, 475, 481, 1053, 1182
FaqI	GGGAC	1 cut(s)	1141
FatI	CATG	5 cut(s)	225, 471, 477, 1049, 1178
FauI	CCCGC	1 cut(s)	1026
FblI	GTMKAC	1 cut(s)	1291
Fnu4HI	GCNGC	6 cut(s)	833, 977, 989, 1001, 1075, 1320
FokI	GGATG	2 cut(s)	547, 706
Fsp4HI	GCNGC	6 cut(s)	833, 977, 989, 1001, 1075, 1320
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	6 cut(s)	833, 977, 989, 1001, 1075, 1320
GsuI	CTGGAG	2 cut(s)	880, 1252
HaeIII	GGCC	2 cut(s)	1192, 1319
HapII	CCGG	1 cut(s)	1149
Hin1II	CATG	5 cut(s)	229, 475, 481, 1053, 1182
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HindIII	AAGCTT	1 cut(s)	703
HpaII	CCGG	1 cut(s)	1149
HphI	GGTGA	2 cut(s)	826, 1111
Hpy166II	GTNNAC	5 cut(s)	519, 580, 649, 899, 1292
Hpy8I	GTNNAC	5 cut(s)	519, 580, 649, 899, 1292
HpyAV	CCTTC	7 cut(s)	74, 658, 678, 858, 1182, 1194, 1254
HpyCH4III	ACNGT	2 cut(s)	1123, 1326
HpyCH4V	TGCA	5 cut(s)	40, 229, 979, 991, 1049
HpyF10VI	GCNNNNNNNGC	4 cut(s)	783, 985, 997, 1111
HpyF3I	CTNAG	4 cut(s)	8, 530, 746, 1243
Hsp92II	CATG	5 cut(s)	229, 475, 481, 1053, 1182
Kzo9I	GATC	6 cut(s)	48, 400, 457, 546, 714, 819
LmnI	GCTCC	4 cut(s)	122, 380, 752, 1206
Lsp1109I	GCAGC	5 cut(s)	819, 963, 975, 987, 1061
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	1117
MalI	GATC	6 cut(s)	50, 402, 459, 548, 716, 821
MboI	GATC	6 cut(s)	48, 400, 457, 546, 714, 819
MflI	RGATCY	3 cut(s)	48, 400, 457
MhlI	GDGCHC	3 cut(s)	297, 1211, 1234
MluCI	AATT	9 cut(s)	100, 177, 345, 406, 626, 805, 1006, 1165, 1195
MlyI	GAGTC	4 cut(s)	12, 430, 773, 931
MmeI	TCCRAC	2 cut(s)	435, 859
MnlI	CCTC	6 cut(s)	113, 391, 599, 743, 1104, 1221
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	5 cut(s)	103, 770, 854, 1013, 1341
MslI	CAYNNNNRTG	3 cut(s)	476, 617, 1183
MspA1I	CMGCKG	1 cut(s)	1297
MspI	CCGG	1 cut(s)	1149
MspR9I	CCNGG	4 cut(s)	53, 633, 859, 1150
Mva1269I	GAATGC	1 cut(s)	156
MvaI	CCWGG	3 cut(s)	53, 633, 859
MvnI	CGCG	1 cut(s)	656
MwoI	GCNNNNNNNGC	4 cut(s)	783, 985, 997, 1111
NciI	CCSGG	1 cut(s)	1150
NdeII	GATC	6 cut(s)	48, 400, 457, 546, 714, 819
NlaIII	CATG	5 cut(s)	229, 475, 481, 1053, 1182
NlaIV	GGNNCC	3 cut(s)	1021, 1037, 1233
NmeAIII	GCCGAG	1 cut(s)	1275
NmuCI	GTSAC	1 cut(s)	1117
NruI	TCGCGA	1 cut(s)	656
NspI	RCATGY	2 cut(s)	229, 481
PaeI	GCATGC	1 cut(s)	229
PciI	ACATGT	1 cut(s)	477
PctI	GAATGC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	6 cut(s)	112, 145, 280, 526, 601, 826
PflFI	GACNNNGTC	1 cut(s)	763
PfoI	TCCNGGA	2 cut(s)	51, 631
PkrI	GCNGC	6 cut(s)	834, 978, 990, 1002, 1076, 1321
PleI	GAGTC	4 cut(s)	11, 430, 772, 930
PpsI	GAGTC	4 cut(s)	11, 430, 772, 930
PpuMI	RGGWCCY	1 cut(s)	1036
PscI	ACATGT	1 cut(s)	477
PsiI	TTATAA	1 cut(s)	671
Psp5II	RGGWCCY	1 cut(s)	1036
Psp6I	CCWGG	3 cut(s)	51, 631, 857
PspEI	GGTNACC	1 cut(s)	1117
PspGI	CCWGG	3 cut(s)	51, 631, 857
PspN4I	GGNNCC	3 cut(s)	1021, 1037, 1233
PspPI	GGNCC	2 cut(s)	759, 1036
PspPPI	RGGWCCY	1 cut(s)	1036
PsuI	RGATCY	3 cut(s)	48, 400, 457
PsyI	GACNNNGTC	1 cut(s)	763
PvuII	CAGCTG	1 cut(s)	1297
RruI	TCGCGA	1 cut(s)	656
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
RseI	CAYNNNNRTG	3 cut(s)	476, 617, 1183
SaqAI	TTAA	5 cut(s)	103, 770, 854, 1013, 1341
SatI	GCNGC	6 cut(s)	833, 977, 989, 1001, 1075, 1320
Sau3AI	GATC	6 cut(s)	48, 400, 457, 546, 714, 819
Sau96I	GGNCC	2 cut(s)	759, 1036
SchI	GAGTC	4 cut(s)	12, 430, 773, 931
ScrFI	CCNGG	4 cut(s)	53, 633, 859, 1150
SduI	GDGCHC	3 cut(s)	297, 1211, 1234
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	2 cut(s)	759, 1036
SmiMI	CAYNNNNRTG	3 cut(s)	476, 617, 1183
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
SphI	GCATGC	1 cut(s)	229
Sse9I	AATT	9 cut(s)	100, 177, 345, 406, 626, 805, 1006, 1165, 1195
SsiI	CCGC	3 cut(s)	1033, 1105, 1320
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	4 cut(s)	51, 631, 857, 1148
TaaI	ACNGT	2 cut(s)	1123, 1326
TaqI	TCGA	3 cut(s)	338, 482, 604
TaqII	GACCGA	1 cut(s)	776
TasI	AATT	9 cut(s)	100, 177, 345, 406, 626, 805, 1006, 1165, 1195
TauI	GCSGC	1 cut(s)	1322
TfiI	GAWTC	6 cut(s)	112, 145, 280, 526, 601, 826
Tru1I	TTAA	5 cut(s)	103, 770, 854, 1013, 1341
Tru9I	TTAA	5 cut(s)	103, 770, 854, 1013, 1341
TscAI	CASTG	4 cut(s)	147, 297, 624, 1329
TseFI	GTSAC	1 cut(s)	1117
TseI	GCWGC	5 cut(s)	832, 976, 988, 1000, 1074
Tsp45I	GTSAC	1 cut(s)	1117
TspDTI	ATGAA	5 cut(s)	251, 611, 713, 812, 1009
TspRI	CASTG	4 cut(s)	147, 297, 624, 1329
Tth111I	GACNNNGTC	1 cut(s)	763
VpaK11BI	GGWCC	2 cut(s)	759, 1036
XagI	CCTNNNNNAGG	1 cut(s)	862
XapI	RAATTY	5 cut(s)	177, 345, 406, 805, 1165
XceI	RCATGY	2 cut(s)	229, 481
XmiI	GTMKAC	1 cut(s)	1291
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.