Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003825

Physical Location & Seq

Genomic Coordinates Forward (+)

36771970 .. 36795831

Gene Structure 23862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG206700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGACTCAAACTTGGACTCTCCATTCACAGACAGGGGGACTGCATTTTCCAAGCCTTCAAAAGATAAAGTTAAAAGGAATTATCGGCGTCGTTCTCCTGTTAGTGGGTCATCTTCATCTGATGGGAGTCCTGAGCATAATAACAGCTCTAGCCCAAAACTTGCAATGGGAGATCCTGGAAAAGTCTCTGAACATCAACCGAGAAGGATAGATGATTGGAGAGAATTAAATAGGGATTCAGAGAGGAGCTATTGTGGAAGAAGCAGTGATTCCTACAGGCATTCTGATAGGCAGTCCAGAAATTCGAAGGGCTACTATGGGCAGGCTGACTACATCAAAAACGACAAGCATGCAGATGATGAAGAAAGAACTAATCAGAAGTTATTTTCTCGTTCGGATAGGGAATCAAGGGGCAGTGCTCATTTTGATAATGTTAGGTCAAGAGAATATTCACGACATTTCGACAAAAATTCTCGTGATACATATGATGGTTCTGAACATAGGAGCAAGGACAAAGAGAGAGGATCTAAATTTCTTGAGTACCAGAAATATAAAGATGACTCATTGTCAGAAAGAGTTGGATCTGGTAGAAGTCATGGACATGTCGAAGATATGGAAAGGGAGAGAGATAGGCATAAAGTTGACAGAGATTCTCAGGATGAGAAAAGAGATCATCGTAGGAGTTCGGGATATTTTAGAAGTGAACGAAATCTCTCCTATGAAGAATCGAGGGGGCATTGCAGTGGCTCAATTTCCAGGAGAGATGATAGTAAACATCGCGAGAGTGAAGGTTATAAGAGTGATTTGAAGGAAATGGATGATGAAAAGCTTGCGAGAGATCAAAGGAAGAAATATGATGATGTCGAAACTAAGAGGAGCAAGGACCGAGTCATTAAAGAACCAACAGAGCGTTCTGAGAATGAAGATAAATTTAGGATTGAAGATCAAGAATCTGCTGCGAAACGAGCAAAGTTTTTTAACCTGGAGAAGGGCATTGCTGGTCAGAAAGATGGTAATGGTTTGTTTATGTTTTCAAATATAATTTTGAGTTCTTCAAAAATACTTATTCATGTCTGTTGTCAAATAACTTTACACTTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMAP

Protein Analysis

367

Amino Acids

42.93

Weight (kDa)

8.88

Isoelectric Point (pI)

63.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720
fragaria_vesca	FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070
malus_domestica	MD14G1089900.v1.1
prunus_persica	Prupe.7G034100_v2.0.a1
pyrus_communis	pycom12g08390
rosa_chinensis	RchiOBHm_Chr6g0276151
rosa_laevigata	RLG00000013413
rosa_multiflora	Rmu_ssc0000201.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192520
rosa_rugosa	Rorug06G0098300 Rorug06G0098400 Rorug06G0098500
rosa_samantha	Rh6AG210300 Rh6BG214400 Rh6BG214500 Rh6CG217200 Rh6DG206500 Rh6DG206700
rosa_wichuraiana	Rw6G018320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
AccII	CGCG	1 cut(s)	780
AclWI	GGATC	3 cut(s)	167, 532, 589
AcsI	RAATTY	4 cut(s)	301, 469, 530, 929
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	2 cut(s)	104, 988
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	6 cut(s)	60, 808, 941, 1035, 1056, 1100
AhdI	GACNNNNNGTC	1 cut(s)	565
AjnI	CCWGG	3 cut(s)	175, 755, 981
AjuI	GAANNNNNNNTTGG	2 cut(s)	895, 927
AluBI	AGCT	3 cut(s)	147, 249, 829
AluI	AGCT	3 cut(s)	147, 249, 829
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	3 cut(s)	167, 532, 589
ApeKI	GCWGC	1 cut(s)	956
ApoI	RAATTY	4 cut(s)	301, 469, 530, 929
AspS9I	GGNCC	1 cut(s)	883
AsuII	TTCGAA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	883
BauI	CACGAG	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	943
BccI	CCATC	3 cut(s)	116, 482, 1004
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciT130I	CCWGG	3 cut(s)	177, 757, 983
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	274
BisI	GCNGC	1 cut(s)	957
BlsI	GCNGC	1 cut(s)	958
Bme1390I	CCNGG	3 cut(s)	177, 757, 983
Bme18I	GGWCC	1 cut(s)	883
BmeRI	GACNNNNNGTC	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	883
BmrFI	CCNGG	3 cut(s)	177, 757, 983
BpmI	CTGGAG	1 cut(s)	1004
Bpu10I	CCTNAGC	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 988
Bse3DI	GCAATG	3 cut(s)	171, 736, 993
BseBI	CCWGG	3 cut(s)	177, 757, 983
BseGI	GGATG	2 cut(s)	664, 823
BseLI	CCNNNNNNNGG	2 cut(s)	104, 988
BseMI	GCAATG	3 cut(s)	171, 736, 993
BseMII	CTCAG	3 cut(s)	123, 668, 906
BseRI	GAGGAG	2 cut(s)	259, 889
BseXI	GCAGC	1 cut(s)	943
Bsh1236I	CGCG	1 cut(s)	780
BsiHKAI	GWGCWC	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	104, 988
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	52
BsmI	GAATGC	1 cut(s)	280
Bsp119I	TTCGAA	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
Bsp68I	TCGCGA	1 cut(s)	780
BspCNI	CTCAG	3 cut(s)	124, 667, 907
BspFNI	CGCG	1 cut(s)	780
BspPI	GGATC	3 cut(s)	167, 532, 589
BspT104I	TTCGAA	1 cut(s)	305
BsrDI	GCAATG	3 cut(s)	171, 736, 993
BssMI	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
BssNI	GRCGYC	1 cut(s)	88
BssSI	CACGAG	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	3 cut(s)	177, 757, 983
BstACI	GRCGYC	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	3 cut(s)	324, 351, 831
BstDEI	CTNAG	4 cut(s)	132, 654, 870, 915
BstENI	CCTNNNNNAGG	1 cut(s)	986
BstF5I	GGATG	2 cut(s)	664, 823
BstFNI	CGCG	1 cut(s)	780
BstKTI	GATC	6 cut(s)	175, 527, 584, 673, 841, 946
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
BstMWI	GCNNNNNNNGC	1 cut(s)	965
BstNI	CCWGG	3 cut(s)	177, 757, 983
BstNSI	RCATGY	2 cut(s)	353, 605
BstSCI	CCNGG	3 cut(s)	175, 755, 981
BstSFI	CTRYAG	1 cut(s)	274
BstUI	CGCG	1 cut(s)	780
BstV1I	GCAGC	1 cut(s)	943
BstX2I	RGATCY	3 cut(s)	172, 524, 581
BstYI	RGATCY	3 cut(s)	172, 524, 581
BtgZI	GCGATG	1 cut(s)	761
BtsCI	GGATG	2 cut(s)	664, 823
BtsI	GCAGTG	3 cut(s)	271, 421, 748
BtsIMutI	CAGTG	3 cut(s)	271, 421, 748
BtuMI	TCGCGA	1 cut(s)	780
Cac8I	GCNNGC	3 cut(s)	324, 351, 831
Cfr13I	GGNCC	1 cut(s)	883
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	4 cut(s)	350, 596, 602, 1070
CviJI	RGCY	8 cut(s)	55, 147, 153, 249, 312, 326, 747, 829
CviKI_1	RGCY	8 cut(s)	55, 147, 153, 249, 312, 326, 747, 829
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	4 cut(s)	132, 654, 870, 915
DpnI	GATC	6 cut(s)	174, 526, 583, 672, 840, 945
DpnII	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
DriI	GACNNNNNGTC	1 cut(s)	565
Eam1105I	GACNNNNNGTC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	883
EcoNI	CCTNNNNNAGG	1 cut(s)	986
EcoRII	CCWGG	3 cut(s)	175, 755, 981
FaeI	CATG	4 cut(s)	353, 599, 605, 1073
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	4 cut(s)	349, 595, 601, 1069
FauNDI	CATATG	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	957
FokI	GGATG	2 cut(s)	671, 830
Fsp4HI	GCNGC	1 cut(s)	957
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	1 cut(s)	957
GsuI	CTGGAG	1 cut(s)	1004
HgaI	GACGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	4 cut(s)	353, 599, 605, 1073
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HindIII	AAGCTT	1 cut(s)	827
Hpy166II	GTNNAC	3 cut(s)	643, 704, 773
Hpy8I	GTNNAC	3 cut(s)	643, 704, 773
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	6 cut(s)	66, 198, 301, 782, 802, 982
HpyCH4V	TGCA	4 cut(s)	44, 164, 353, 741
HpyF10VI	GCNNNNNNNGC	1 cut(s)	965
HpyF3I	CTNAG	4 cut(s)	132, 654, 870, 915
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	4 cut(s)	353, 599, 605, 1073
Kzo9I	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
LmnI	GCTCC	3 cut(s)	246, 504, 876
Lsp1109I	GCAGC	1 cut(s)	943
MaeI	CTAG	1 cut(s)	150
MalI	GATC	6 cut(s)	174, 526, 583, 672, 840, 945
MboI	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
MboII	GAAGA	9 cut(s)	105, 270, 374, 620, 734, 859, 935, 953, 1044
MflI	RGATCY	3 cut(s)	172, 524, 581
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	8 cut(s)	79, 224, 301, 469, 530, 750, 929, 1041
MlyI	GAGTC	4 cut(s)	11, 136, 554, 897
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	4 cut(s)	237, 515, 723, 867
MseI	TTAA	4 cut(s)	72, 227, 894, 978
MslI	CAYNNNNRTG	3 cut(s)	354, 600, 741
MspR9I	CCNGG	3 cut(s)	177, 757, 983
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	3 cut(s)	177, 757, 983
MvnI	CGCG	1 cut(s)	780
MwoI	GCNNNNNNNGC	1 cut(s)	965
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
NlaIII	CATG	4 cut(s)	353, 599, 605, 1073
NruI	TCGCGA	1 cut(s)	780
NspI	RCATGY	2 cut(s)	353, 605
NspV	TTCGAA	1 cut(s)	305
PaeI	GCATGC	1 cut(s)	353
PciI	ACATGT	1 cut(s)	601
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	6 cut(s)	236, 269, 404, 650, 725, 950
PflFI	GACNNNGTC	1 cut(s)	887
PfoI	TCCNGGA	2 cut(s)	175, 755
PkrI	GCNGC	1 cut(s)	958
PleI	GAGTC	4 cut(s)	11, 135, 554, 896
PpsI	GAGTC	4 cut(s)	11, 135, 554, 896
PscI	ACATGT	1 cut(s)	601
PsiI	TTATAA	1 cut(s)	795
Psp6I	CCWGG	3 cut(s)	175, 755, 981
PspGI	CCWGG	3 cut(s)	175, 755, 981
PspPI	GGNCC	1 cut(s)	883
PsuI	RGATCY	3 cut(s)	172, 524, 581
PsyI	GACNNNGTC	1 cut(s)	887
RruI	TCGCGA	1 cut(s)	780
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	3 cut(s)	354, 600, 741
SaqAI	TTAA	4 cut(s)	72, 227, 894, 978
SatI	GCNGC	1 cut(s)	957
Sau3AI	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
Sau96I	GGNCC	1 cut(s)	883
SchI	GAGTC	4 cut(s)	11, 136, 554, 897
ScrFI	CCNGG	3 cut(s)	177, 757, 983
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	6 cut(s)	149, 251, 440, 793, 831, 984
SfcI	CTRYAG	1 cut(s)	274
SfuI	TTCGAA	1 cut(s)	305
SinI	GGWCC	1 cut(s)	883
SmiMI	CAYNNNNRTG	3 cut(s)	354, 600, 741
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	8 cut(s)	79, 224, 301, 469, 530, 750, 929, 1041
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	3 cut(s)	175, 755, 981
TaqI	TCGA	5 cut(s)	305, 462, 606, 728, 864
TaqII	GACCGA	1 cut(s)	900
TasI	AATT	8 cut(s)	79, 224, 301, 469, 530, 750, 929, 1041
TfiI	GAWTC	6 cut(s)	236, 269, 404, 650, 725, 950
Tru1I	TTAA	4 cut(s)	72, 227, 894, 978
Tru9I	TTAA	4 cut(s)	72, 227, 894, 978
TscAI	CASTG	3 cut(s)	271, 421, 748
TseI	GCWGC	1 cut(s)	956
TspDTI	ATGAA	6 cut(s)	105, 375, 735, 837, 936, 1058
TspRI	CASTG	3 cut(s)	271, 421, 748
Tth111I	GACNNNGTC	1 cut(s)	887
VpaK11BI	GGWCC	1 cut(s)	883
XagI	CCTNNNNNAGG	1 cut(s)	986
XapI	RAATTY	4 cut(s)	301, 469, 530, 929
XceI	RCATGY	2 cut(s)	353, 605
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.