Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003825

Physical Location & Seq

Genomic Coordinates Forward (+)

9584730 .. 9585904

Gene Structure 1175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g08390.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGGGATGCTTTATGTAGTGGGAGTCCTGTGCATGAGCATAGTTCTAGCCCAAGAATTTCACGCGAATATCCTGTTAAAGTCTCTGAATATCGAACAAGAAGGAGAGAAGATGAAAGGGAATTTGAGAGGAATTTAAATAGGAGTTGTTATGGAAAAAGCAGTGATTCCTACAGGAATTACGATAGACAGTCGTTCAGAACTTCACATGGTTACCATAGGCATGATGACTACATCAAACATGACAAACATGGTGATGAAGAAGAAAGAAATTATCAGAAGTTATCTTCTCGTCTCAGTAGGGAGACAAGGGGTAGTGCTCATTCTGATTATACTAGGTCAAAAGACTATTTGCACCATTCGGACAAATATTCTCGTGATAAATATCATGGTTCAGTATATAGGAGGGAGGATAAAGATAGAGAATCTTCATTTCCTGAGCACCAGAAATATAACGATAAGGACTCATCATCTGAGAAAGTTGGATATGGCAGGAGACATGGATATTTTGAAGAGATGGACAAGGAACGTGGTAGGCAAACATTGGACAGAGATGGGCAACGAAGTGGCTTGATTTCCAGGAGAGATGAAGGTAAACATTGCGTGAAAGAAGGTTACAAGATGAGGAACCGAAATACTAGAGAACCATCAGAGCAGTCTGCCTATGGTATTTTAAGGAGTCAAAATGAAGAATCTACTGCGAAAAGACCAAAGTTATACAGCTCCGAGAAGAACATTGATGGTTGGAAAGATGGTAATGGTTTATTTAATATTTCCATGTGTAATTTTAATCCTCAAAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMAP

Protein Analysis

269

Amino Acids

31.87

Weight (kDa)

9.2

Isoelectric Point (pI)

61.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720
fragaria_vesca	FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070
malus_domestica	MD14G1089900.v1.1
prunus_persica	Prupe.7G034100_v2.0.a1
pyrus_communis	pycom12g08390
rosa_chinensis	RchiOBHm_Chr6g0276151
rosa_laevigata	RLG00000013413
rosa_multiflora	Rmu_ssc0000201.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192520
rosa_rugosa	Rorug06G0098300 Rorug06G0098400 Rorug06G0098500
rosa_samantha	Rh6AG210300 Rh6BG214400 Rh6BG214500 Rh6CG217200 Rh6DG206500 Rh6DG206700
rosa_wichuraiana	Rw6G018320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	66
AcsI	RAATTY	3 cut(s)	57, 122, 133
AgsI	TTSAA	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	578
AluBI	AGCT	1 cut(s)	723
AluI	AGCT	1 cut(s)	723
Alw21I	GWGCWC	2 cut(s)	322, 444
Alw26I	GTCTC	4 cut(s)	88, 299, 299, 490
ApoI	RAATTY	3 cut(s)	57, 122, 133
AsuHPI	GGTGA	1 cut(s)	266
BauI	CACGAG	1 cut(s)	375
Bbv12I	GWGCWC	2 cut(s)	322, 444
BccI	CCATC	5 cut(s)	511, 548, 655, 734, 746
BciT130I	CCWGG	1 cut(s)	580
BcoDI	GTCTC	4 cut(s)	88, 299, 299, 490
BfaI	CTAG	3 cut(s)	48, 336, 639
BfmI	CTRYAG	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	580
BmiI	GGNNCC	1 cut(s)	629
BmrFI	CCNGG	1 cut(s)	580
Bpu10I	CCTNAGC	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	598
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	580
BseGI	GGATG	1 cut(s)	13
BseJI	GATNNNNATC	1 cut(s)	384
BseMI	GCAATG	1 cut(s)	598
BseMII	CTCAG	3 cut(s)	310, 429, 465
Bsh1236I	CGCG	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	322, 444
BsmAI	GTCTC	4 cut(s)	88, 299, 299, 490
BsmBI	CGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	322, 444
BspCNI	CTCAG	3 cut(s)	309, 430, 466
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	598
BssSI	CACGAG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	507
BstDEI	CTNAG	3 cut(s)	296, 438, 474
BstEII	GGTNACC	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	13
BstFNI	CGCG	1 cut(s)	66
BstMAI	GTCTC	4 cut(s)	88, 299, 299, 490
BstNI	CCWGG	1 cut(s)	580
BstPI	GGTNACC	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	578
BstSFI	CTRYAG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	169
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviAII	CATG	8 cut(s)	35, 209, 224, 242, 251, 389, 500, 778
CviJI	RGCY	3 cut(s)	51, 570, 723
CviKI_1	RGCY	3 cut(s)	51, 570, 723
DdeI	CTNAG	3 cut(s)	296, 438, 474
DraI	TTTAAA	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco91I	GGTNACC	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	578
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	8 cut(s)	38, 212, 227, 245, 254, 392, 503, 781
FatI	CATG	8 cut(s)	34, 208, 223, 241, 250, 388, 499, 777
FokI	GGATG	1 cut(s)	20
FspBI	CTAG	3 cut(s)	48, 336, 639
Hin1II	CATG	8 cut(s)	38, 212, 227, 245, 254, 392, 503, 781
HinfI	GANTC	6 cut(s)	25, 167, 425, 464, 679, 692
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	596
Hpy188I	TCNGA	8 cut(s)	88, 200, 279, 328, 364, 475, 652, 727
Hpy188III	TCNNGA	2 cut(s)	377, 437
Hpy8I	GTNNAC	1 cut(s)	596
HpyAV	CCTTC	3 cut(s)	96, 584, 605
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	529
HpyCH4V	TGCA	2 cut(s)	34, 355
HpyF3I	CTNAG	3 cut(s)	296, 438, 474
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	8 cut(s)	38, 212, 227, 245, 254, 392, 503, 781
LmnI	GCTCC	1 cut(s)	728
LpnPI	CCDG	8 cut(s)	42, 87, 160, 450, 458, 478, 565, 592
MaeI	CTAG	3 cut(s)	48, 336, 639
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	2 cut(s)	212, 614
MboII	GAAGA	8 cut(s)	122, 272, 275, 279, 420, 524, 701, 742
MhlI	GDGCHC	2 cut(s)	322, 444
MluCI	AATT	6 cut(s)	57, 122, 133, 178, 271, 784
MlyI	GAGTC	3 cut(s)	34, 458, 688
MmeI	TCCRAC	2 cut(s)	463, 725
MnlI	CCTC	5 cut(s)	123, 399, 403, 618, 804
MseI	TTAA	6 cut(s)	78, 137, 674, 768, 789, 805
MslI	CAYNNNNRTG	2 cut(s)	222, 255
MspR9I	CCNGG	1 cut(s)	580
MvaI	CCWGG	1 cut(s)	580
MvnI	CGCG	1 cut(s)	66
NlaIII	CATG	8 cut(s)	38, 212, 227, 245, 254, 392, 503, 781
NlaIV	GGNNCC	1 cut(s)	629
PfeI	GAWTC	3 cut(s)	167, 425, 692
PfoI	TCCNGGA	1 cut(s)	578
PleI	GAGTC	3 cut(s)	33, 458, 687
PpsI	GAGTC	3 cut(s)	33, 458, 687
Psp6I	CCWGG	1 cut(s)	578
PspEI	GGTNACC	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	578
PspN4I	GGNNCC	1 cut(s)	629
RseI	CAYNNNNRTG	2 cut(s)	222, 255
SaqAI	TTAA	6 cut(s)	78, 137, 674, 768, 789, 805
SchI	GAGTC	3 cut(s)	34, 458, 688
ScrFI	CCNGG	1 cut(s)	580
SduI	GDGCHC	2 cut(s)	322, 444
SetI	ASST	5 cut(s)	341, 532, 595, 616, 725
SfcI	CTRYAG	1 cut(s)	172
SmiI	ATTTAAAT	1 cut(s)	138
SmiMI	CAYNNNNRTG	2 cut(s)	222, 255
Sse9I	AATT	6 cut(s)	57, 122, 133, 178, 271, 784
SspI	AATATT	2 cut(s)	371, 772
SspMI	CTAG	3 cut(s)	48, 336, 639
StyD4I	CCNGG	1 cut(s)	578
SwaI	ATTTAAAT	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	1 cut(s)	94
TasI	AATT	6 cut(s)	57, 122, 133, 178, 271, 784
TfiI	GAWTC	3 cut(s)	167, 425, 692
Tru1I	TTAA	6 cut(s)	78, 137, 674, 768, 789, 805
Tru9I	TTAA	6 cut(s)	78, 137, 674, 768, 789, 805
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	5 cut(s)	129, 273, 420, 603, 702
TspRI	CASTG	1 cut(s)	169
XapI	RAATTY	3 cut(s)	57, 122, 133
XspI	CTAG	3 cut(s)	48, 336, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.