Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003825

Physical Location & Seq

Genomic Coordinates Forward (+)

36078383 .. 36084123

Gene Structure 5741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG217200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGACTCAAACTTGGACTCGCCATTCACAGACAGGGGGACTGCATTTTCCAAGCCTTCAAAAGATAAAGTTAAAAGGAATTATCGGCGTCATTCTCCTGTTAGTGGGTCATCTTCATCTGATGGGAGTCCTGAGCATAATAACAGCTCTAGCCCAAAACTTGCAATGGGAGATCCTGGAAAAGTCTCTGAACATCAACCGAGAAGGATAGATGATTGGAGAGAATTAAATAGGGATTCAGAGAGGAGCTATTGTGGAAGAAGCAGTGATTCCTACCGGCATTCTGATAGGCAGTCCAGAAATTCAAAGGGCTACTATGGGCAGGCTGACTACATCAAAAACGACAAGCATGCAGATGATGAAGAAAGAACTAATCAGAAGTTATCTTCTCGTTCGGATAGGGAATCAAGGGGCAGTGCTCATTTTGATAATGTTAGGTCAAGAGACTATTCACGACATTTCGACAAAAATTCTCGTGATAAATATGATGGTTCTGAACATAGGAGCAAGGACAAAGAGAGAGGATCTAAATTTCTTGAGTACCAGAAATATAAAGATGACTCATTGTCAGAAAGAGTTGGATCTGGTAGAAGTCATGGACATGTCGAAGATATGGAAAGGGAGAAAGATAGGCATAAAGTTGACAGAGATTCTCAGGATGAGAAAAGAGATCATCGTAGGAGTTTGGGATATTTTAGAAGTGAACGAAATCTCTCCTATGAAGAATCGAGGGGGCATCGCAGTGGCTCAATTTCCAGGAGAGATGATAGTAAACATCACGAGAGTGAAGGTTATAAGAGTGATTTGAAGGAAATGGATGATGAAAAGCTTGCGAGAGATCAAAGGAAGAAATATGATGATATCGAAACTAAGAGGAGCAAGGACCGAGTCATTAAAGAACCAACAGAGCGTTCTGAGAATGAAGATAAATTTAGGAGTGAAGATCAAGAATCTGCTGCGAAACGACCAAAGTTTTTTAGCCAGGAGAAGGGCATTGCTGGTCGGAAAGATGTTTCCAAGTTCACAACTACATCTGATGGAAGAGAGTCGTCAAGTTCCAAGCAAGTTCAAGATGGTAAAATGGGGAATGACATAAATGCTGCAAAAGTTGCTGCAATGAAAGCTGCTGAATTGGTTAATAGGAACCTTGCTGGTGCGGGTCCTGTGGGTTGCATGACTGCTGACCAAAAGAAAAAGCTGCTGTGGGGCAACAAAAAGAACACAACTGCAGAAGAGGCTGGTCACCGTTGGGACACGGCTTTGTTCCCTGACCGGGAAAGACAAGAAAAATTCAAAAAACTCATGGTAAATTTCTGTTTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMAP

Protein Analysis

441

Amino Acids

50.99

Weight (kDa)

9.29

Isoelectric Point (pI)

60.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720
fragaria_vesca	FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070
malus_domestica	MD14G1089900.v1.1
prunus_persica	Prupe.7G034100_v2.0.a1
pyrus_communis	pycom12g08390
rosa_chinensis	RchiOBHm_Chr6g0276151
rosa_laevigata	RLG00000013413
rosa_multiflora	Rmu_ssc0000201.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192520
rosa_rugosa	Rorug06G0098300 Rorug06G0098400 Rorug06G0098500
rosa_samantha	Rh6AG210300 Rh6BG214400 Rh6BG214500 Rh6CG217200 Rh6DG206500 Rh6DG206700
rosa_wichuraiana	Rw6G018320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
AciI	CCGC	1 cut(s)	1157
AclWI	GGATC	3 cut(s)	167, 532, 589
AcsI	RAATTY	6 cut(s)	301, 469, 530, 929, 1289, 1309
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	3 cut(s)	104, 988, 1273
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	5 cut(s)	60, 306, 808, 1070, 1294
AhdI	GACNNNNNGTC	1 cut(s)	565
AjnI	CCWGG	3 cut(s)	175, 755, 981
AjuI	GAANNNNNNNTTGG	2 cut(s)	895, 927
AleI	CACNNNNGTG	1 cut(s)	783
AluBI	AGCT	5 cut(s)	147, 249, 829, 1124, 1198
AluI	AGCT	5 cut(s)	147, 249, 829, 1124, 1198
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	2 cut(s)	190, 438
AlwI	GGATC	3 cut(s)	167, 532, 589
ApeKI	GCWGC	5 cut(s)	956, 1100, 1112, 1124, 1198
ApoI	RAATTY	6 cut(s)	301, 469, 530, 929, 1289, 1309
AspS9I	GGNCC	2 cut(s)	883, 1160
AsuC2I	CCSGG	1 cut(s)	1274
AsuHPI	GGTGA	1 cut(s)	1235
AvaII	GGWCC	2 cut(s)	883, 1160
BauI	CACGAG	2 cut(s)	474, 779
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	5 cut(s)	943, 1087, 1099, 1111, 1185
BccI	CCATC	4 cut(s)	116, 482, 1031, 1067
BceAI	ACGGC	1 cut(s)	1272
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciT130I	CCWGG	3 cut(s)	177, 757, 983
BcnI	CCSGG	1 cut(s)	1274
BcoDI	GTCTC	2 cut(s)	190, 438
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	1227
BisI	GCNGC	5 cut(s)	957, 1101, 1113, 1125, 1199
BlsI	GCNGC	5 cut(s)	958, 1102, 1114, 1126, 1200
Bme1390I	CCNGG	4 cut(s)	177, 757, 983, 1274
Bme18I	GGWCC	2 cut(s)	883, 1160
BmeRI	GACNNNNNGTC	1 cut(s)	565
BmgT120I	GGNCC	2 cut(s)	883, 1160
BmiI	GGNNCC	2 cut(s)	1145, 1161
BmrFI	CCNGG	4 cut(s)	177, 757, 983, 1274
BmsI	GCATC	1 cut(s)	745
Bpu10I	CCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	1 cut(s)	1274
BsaHI	GRCGYC	1 cut(s)	88
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 988, 1273
Bse118I	RCCGGY	1 cut(s)	276
Bse3DI	GCAATG	3 cut(s)	171, 993, 1122
BseBI	CCWGG	3 cut(s)	177, 757, 983
BseGI	GGATG	2 cut(s)	664, 823
BseLI	CCNNNNNNNGG	3 cut(s)	104, 988, 1273
BseMI	GCAATG	3 cut(s)	171, 993, 1122
BseMII	CTCAG	3 cut(s)	123, 668, 906
BseRI	GAGGAG	2 cut(s)	259, 889
BseXI	GCAGC	5 cut(s)	943, 1087, 1099, 1111, 1185
BsiHKAI	GWGCWC	1 cut(s)	421
BsiSI	CCGG	2 cut(s)	277, 1273
BslFI	GGGAC	2 cut(s)	52, 1265
BslI	CCNNNNNNNGG	3 cut(s)	104, 988, 1273
BsmAI	GTCTC	2 cut(s)	190, 438
BsmFI	GGGAC	2 cut(s)	52, 1265
BsmI	GAATGC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
BspACI	CCGC	1 cut(s)	1157
BspCNI	CTCAG	3 cut(s)	124, 667, 907
BspLI	GGNNCC	2 cut(s)	1145, 1161
BspMAI	CTGCAG	1 cut(s)	1231
BspPI	GGATC	3 cut(s)	167, 532, 589
BsrDI	GCAATG	3 cut(s)	171, 993, 1122
BsrFI	RCCGGY	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	276
BssMI	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
BssNI	GRCGYC	1 cut(s)	88
BssSI	CACGAG	2 cut(s)	474, 779
Bst2BI	CACGAG	2 cut(s)	474, 779
Bst2UI	CCWGG	3 cut(s)	177, 757, 983
Bst4CI	ACNGT	1 cut(s)	1247
Bst6I	CTCTTC	2 cut(s)	1036, 1227
BstACI	GRCGYC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	1109
BstC8I	GCNNGC	3 cut(s)	324, 351, 831
BstDEI	CTNAG	4 cut(s)	132, 654, 870, 915
BstEII	GGTNACC	1 cut(s)	1241
BstF5I	GGATG	2 cut(s)	664, 823
BstKTI	GATC	6 cut(s)	175, 527, 584, 673, 841, 946
BstMAI	GTCTC	2 cut(s)	190, 438
BstMBI	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
BstMWI	GCNNNNNNNGC	3 cut(s)	1109, 1121, 1235
BstNI	CCWGG	3 cut(s)	177, 757, 983
BstNSI	RCATGY	2 cut(s)	353, 605
BstPI	GGTNACC	1 cut(s)	1241
BstSCI	CCNGG	4 cut(s)	175, 755, 981, 1272
BstSFI	CTRYAG	1 cut(s)	1227
BstV1I	GCAGC	5 cut(s)	943, 1087, 1099, 1111, 1185
BstX2I	RGATCY	3 cut(s)	172, 524, 581
BstYI	RGATCY	3 cut(s)	172, 524, 581
BtgZI	GCGATG	1 cut(s)	722
BtsCI	GGATG	2 cut(s)	664, 823
BtsI	GCAGTG	3 cut(s)	271, 421, 748
BtsIMutI	CAGTG	3 cut(s)	271, 421, 748
Cac8I	GCNNGC	3 cut(s)	324, 351, 831
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	883, 1160
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	5 cut(s)	350, 596, 602, 1174, 1303
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	4 cut(s)	132, 654, 870, 915
DpnI	GATC	6 cut(s)	174, 526, 583, 672, 840, 945
DpnII	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
DriI	GACNNNNNGTC	1 cut(s)	565
Eam1104I	CTCTTC	2 cut(s)	1036, 1227
Eam1105I	GACNNNNNGTC	1 cut(s)	565
EarI	CTCTTC	2 cut(s)	1036, 1227
Eco32I	GATATC	1 cut(s)	862
Eco47I	GGWCC	2 cut(s)	883, 1160
Eco91I	GGTNACC	1 cut(s)	1241
EcoO109I	RGGNCCY	1 cut(s)	1160
EcoO65I	GGTNACC	1 cut(s)	1241
EcoRII	CCWGG	3 cut(s)	175, 755, 981
EcoRV	GATATC	1 cut(s)	862
FaeI	CATG	5 cut(s)	353, 599, 605, 1177, 1306
FaqI	GGGAC	2 cut(s)	52, 1265
FatI	CATG	5 cut(s)	349, 595, 601, 1173, 1302
FauI	CCCGC	1 cut(s)	1150
Fnu4HI	GCNGC	5 cut(s)	957, 1101, 1113, 1125, 1199
FokI	GGATG	2 cut(s)	671, 830
Fsp4HI	GCNGC	5 cut(s)	957, 1101, 1113, 1125, 1199
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	5 cut(s)	957, 1101, 1113, 1125, 1199
HapII	CCGG	2 cut(s)	277, 1273
HgaI	GACGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	5 cut(s)	353, 599, 605, 1177, 1306
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HindIII	AAGCTT	1 cut(s)	827
HpaII	CCGG	2 cut(s)	277, 1273
HphI	GGTGA	1 cut(s)	1235
Hpy166II	GTNNAC	4 cut(s)	643, 704, 773, 1023
Hpy8I	GTNNAC	4 cut(s)	643, 704, 773, 1023
HpyAV	CCTTC	5 cut(s)	66, 198, 782, 802, 982
HpyCH4III	ACNGT	1 cut(s)	1247
HpyCH4V	TGCA	7 cut(s)	44, 164, 353, 1103, 1115, 1173, 1229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1109, 1121, 1235
HpyF3I	CTNAG	4 cut(s)	132, 654, 870, 915
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	5 cut(s)	353, 599, 605, 1177, 1306
Kzo9I	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
LmnI	GCTCC	3 cut(s)	246, 504, 876
Lsp1109I	GCAGC	5 cut(s)	943, 1087, 1099, 1111, 1185
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	1241
MalI	GATC	6 cut(s)	174, 526, 583, 672, 840, 945
MboI	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
MflI	RGATCY	3 cut(s)	172, 524, 581
MhlI	GDGCHC	1 cut(s)	421
MlyI	GAGTC	5 cut(s)	11, 136, 554, 897, 1055
MmeI	TCCRAC	2 cut(s)	559, 983
MnlI	CCTC	5 cut(s)	237, 515, 723, 867, 1228
MseI	TTAA	5 cut(s)	72, 227, 894, 1137, 1324
MslI	CAYNNNNRTG	4 cut(s)	354, 600, 741, 783
MspI	CCGG	2 cut(s)	277, 1273
MspR9I	CCNGG	4 cut(s)	177, 757, 983, 1274
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	3 cut(s)	177, 757, 983
MwoI	GCNNNNNNNGC	3 cut(s)	1109, 1121, 1235
NciI	CCSGG	1 cut(s)	1274
NdeII	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
NlaIII	CATG	5 cut(s)	353, 599, 605, 1177, 1306
NlaIV	GGNNCC	2 cut(s)	1145, 1161
NmuCI	GTSAC	1 cut(s)	1241
NspI	RCATGY	2 cut(s)	353, 605
OliI	CACNNNNGTG	1 cut(s)	783
PaeI	GCATGC	1 cut(s)	353
PciI	ACATGT	1 cut(s)	601
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	6 cut(s)	236, 269, 404, 650, 725, 950
PflFI	GACNNNGTC	1 cut(s)	887
PfoI	TCCNGGA	2 cut(s)	175, 755
PkrI	GCNGC	5 cut(s)	958, 1102, 1114, 1126, 1200
PleI	GAGTC	5 cut(s)	11, 135, 554, 896, 1054
PpsI	GAGTC	5 cut(s)	11, 135, 554, 896, 1054
PpuMI	RGGWCCY	1 cut(s)	1160
PscI	ACATGT	1 cut(s)	601
PsiI	TTATAA	1 cut(s)	795
Psp5II	RGGWCCY	1 cut(s)	1160
Psp6I	CCWGG	3 cut(s)	175, 755, 981
PspEI	GGTNACC	1 cut(s)	1241
PspGI	CCWGG	3 cut(s)	175, 755, 981
PspN4I	GGNNCC	2 cut(s)	1145, 1161
PspPI	GGNCC	2 cut(s)	883, 1160
PspPPI	RGGWCCY	1 cut(s)	1160
PstI	CTGCAG	1 cut(s)	1231
PsuI	RGATCY	3 cut(s)	172, 524, 581
PsyI	GACNNNGTC	1 cut(s)	887
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	4 cut(s)	354, 600, 741, 783
SaqAI	TTAA	5 cut(s)	72, 227, 894, 1137, 1324
SatI	GCNGC	5 cut(s)	957, 1101, 1113, 1125, 1199
Sau3AI	GATC	6 cut(s)	172, 524, 581, 670, 838, 943
Sau96I	GGNCC	2 cut(s)	883, 1160
SchI	GAGTC	5 cut(s)	11, 136, 554, 897, 1055
ScrFI	CCNGG	4 cut(s)	177, 757, 983, 1274
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	8 cut(s)	149, 251, 440, 793, 831, 1126, 1149, 1200
SfaNI	GCATC	1 cut(s)	745
SfcI	CTRYAG	1 cut(s)	1227
SinI	GGWCC	2 cut(s)	883, 1160
SmiMI	CAYNNNNRTG	4 cut(s)	354, 600, 741, 783
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SphI	GCATGC	1 cut(s)	353
SsiI	CCGC	1 cut(s)	1157
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	4 cut(s)	175, 755, 981, 1272
TaaI	ACNGT	1 cut(s)	1247
TaqI	TCGA	4 cut(s)	462, 606, 728, 864
TaqII	GACCGA	1 cut(s)	900
TfiI	GAWTC	6 cut(s)	236, 269, 404, 650, 725, 950
Tru1I	TTAA	5 cut(s)	72, 227, 894, 1137, 1324
Tru9I	TTAA	5 cut(s)	72, 227, 894, 1137, 1324
TscAI	CASTG	3 cut(s)	271, 421, 748
TseFI	GTSAC	1 cut(s)	1241
TseI	GCWGC	5 cut(s)	956, 1100, 1112, 1124, 1198
Tsp45I	GTSAC	1 cut(s)	1241
TspDTI	ATGAA	6 cut(s)	105, 375, 735, 837, 936, 1133
TspRI	CASTG	3 cut(s)	271, 421, 748
Tth111I	GACNNNGTC	1 cut(s)	887
VpaK11BI	GGWCC	2 cut(s)	883, 1160
XapI	RAATTY	6 cut(s)	301, 469, 530, 929, 1289, 1309
XceI	RCATGY	2 cut(s)	353, 605
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.