RchiOBHm_Chr6g0276151

Small acidic protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003825
Physical Location & Seq
Forward (+)
38160650 .. 38166338
5689 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24773

Sequence Viewer

Length: 1467 bp
ATGGACTCAAACTTGGACTCTCCATTCACAGACAGGGGGACTGCATTTTCCAAGCCTTCAAAAGATAAAGTTAAAAGGAATTATCGGCGTCGTTCTCCTGTTAGTGGGTCATCTTCATCTGATGGGAGTCCTGAGCATAATAACAGCTCTAGCCCAAAACTTGCAATGGGAGATCCTGGAAAAGTCTCTGAACATCAACCGAGAAGGATAGATGATTGGAGAGAATTAAATAGGGATTCAGAGAGGAGCTATTGTGGAAGAAGCAGTGATTCCTACAGGCATTCTGATAGGCAGTCCAGAAATTCGAAGGGCTACTATGGGCAGGCTGACTACATCAAAAACGACAAGCATGCAGATGATGAAGAAAGAACTAATCAGAAGTTATTTTCTCGTTCGGATAGGGAATCAAGGGGCAGTGCTCATTTTGATAATGTTAGGTCAAGAGAATATTCACGACATTTCGACAAAAATTCTCGTGATACATATGATGGTTCTGAACATAGGAGCAAGGACAAAGAGAGAGGATCTAAATTTCTTGAGTACCAGAAATATAAAGATGACTCATTGTCAGAAAGAGTTGGATCTGGTAGAAGTCATGGACATGTCGAAGATATGGAAAGGGAGAGAGATAGGCATAAAGTTGACAGAGATTCTCAGGATGAGAAAAGAGATCATCGTAGGAGTTCGGGATATTTTAGAAGTGAACGAAATCTCTCCTATGAAGAATCGAGGGGGCATTGCAGTGGCTCAATTTCCAGGAGAGATGATAGTAAACATCGCGAGAGTGAAGGTTATAAGAGTGATTTGAAGGAAATGGATGATGAAAAGCTTGCGAGAGATCAAAGGAAGAAATATGATGATGTCGAAACTAAGAGGAGCAAGGACCGAGTCATTAAAGAACCAACAGAGCGTTCTGAGAATGAAGATAAATTTAGGATTGAAGATCAAGAATCTGCTGCGAAACGAGCAAAGTTTTTTAACCTGGAGAAGGGCATTGCTGGTCAGAAAGATGTTTCCAAGTTCACAACTACATCTGATGGAAGAGAGTCGTCAAGTTCCAAGCAAGTTCAAGATGGTAAAATGGAGAATGACATAAATGCTGCAAAAGTTGCTGCAATGAAAGCTGCTGAATTGGTTAATAGGAACCTTGCTGGTGCGGGTCCTGTGGGTTGCATGACTGCTGACCAAAAGAAAAAGCTGCTGTGGGGCAACAAAAAGAACACAACTGCAGAAGAGGCTGGTCACCGTTGGGACACGGCTTTGTTCCCTGACCGGGAAAGACAAGAAAAATTCAAAAAACTCATGGGTGTGAAGGGCGAATTGAAGGTGGAGCACAACCCCGACAACCAAGAGGACACCAATCTTCTCAGAGCCGAGAAGCAGAAGGAACTCCAGCAGGATTTGGAGAAGCAGTATACAGCTGGACTGCGAAGAAGAGATGGCCGCACTGTTGGTTTAGGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMAP

Protein Analysis

488

Amino Acids

56.39

Weight (kDa)

9.16

Isoelectric Point (pI)

58.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMAP PF15477 417 - 487 2.7e-17 Small acidic protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 795
AccI GTMKAC 1 cut(s) 1415
AccII CGCG 1 cut(s) 780
AciI CCGC 2 cut(s) 1157, 1444
AclWI GGATC 3 cut(s) 167, 532, 589
AcoI YGGCCR 1 cut(s) 1441
AcsI RAATTY 5 cut(s) 301, 469, 530, 929, 1289
AcyI GRCGYC 1 cut(s) 88
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 3 cut(s) 104, 988, 1273
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 6 cut(s) 60, 808, 941, 1070, 1294, 1324
AhdI GACNNNNNGTC 1 cut(s) 565
AjnI CCWGG 3 cut(s) 175, 755, 981
AjuI GAANNNNNNNTTGG 2 cut(s) 895, 927
AluBI AGCT 6 cut(s) 147, 249, 829, 1124, 1198, 1421
AluI AGCT 6 cut(s) 147, 249, 829, 1124, 1198, 1421
Alw21I GWGCWC 2 cut(s) 421, 1335
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 3 cut(s) 167, 532, 589
AoxI GGCC 1 cut(s) 1441
ApeKI GCWGC 5 cut(s) 956, 1100, 1112, 1124, 1198
ApoI RAATTY 5 cut(s) 301, 469, 530, 929, 1289
AspS9I GGNCC 2 cut(s) 883, 1160
AsuC2I CCSGG 1 cut(s) 1274
AsuHPI GGTGA 1 cut(s) 1235
AsuII TTCGAA 1 cut(s) 305
AvaII GGWCC 2 cut(s) 883, 1160
BauI CACGAG 1 cut(s) 474
Bbv12I GWGCWC 2 cut(s) 421, 1335
BbvI GCAGC 5 cut(s) 943, 1087, 1099, 1111, 1185
BccI CCATC 5 cut(s) 116, 482, 1031, 1067, 1433
BceAI ACGGC 1 cut(s) 1272
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 3 cut(s) 177, 757, 983
BcnI CCSGG 1 cut(s) 1274
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 2 cut(s) 274, 1227
BisI GCNGC 6 cut(s) 957, 1101, 1113, 1125, 1199, 1444
BlsI GCNGC 6 cut(s) 958, 1102, 1114, 1126, 1200, 1445
Bme1390I CCNGG 4 cut(s) 177, 757, 983, 1274
Bme18I GGWCC 2 cut(s) 883, 1160
BmeRI GACNNNNNGTC 1 cut(s) 565
BmgT120I GGNCC 2 cut(s) 883, 1160
BmiI GGNNCC 2 cut(s) 1145, 1161
BmrFI CCNGG 4 cut(s) 177, 757, 983, 1274
BpmI CTGGAG 2 cut(s) 1004, 1376
Bpu10I CCTNAGC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 557
BpuMI CCSGG 1 cut(s) 1274
BsaHI GRCGYC 1 cut(s) 88
BsaXI ACNNNNNCTCC 4 cut(s) 238, 268, 1397, 1427
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 988, 1273
Bse3DI GCAATG 4 cut(s) 171, 736, 993, 1122
BseBI CCWGG 3 cut(s) 177, 757, 983
BseGI GGATG 2 cut(s) 664, 823
BseLI CCNNNNNNNGG 3 cut(s) 104, 988, 1273
BseMI GCAATG 4 cut(s) 171, 736, 993, 1122
BseMII CTCAG 4 cut(s) 123, 668, 906, 1381
BseRI GAGGAG 2 cut(s) 259, 889
BseXI GCAGC 5 cut(s) 943, 1087, 1099, 1111, 1185
Bsh1236I CGCG 1 cut(s) 780
BshFI GGCC 1 cut(s) 1443
BsiHKAI GWGCWC 2 cut(s) 421, 1335
BsiSI CCGG 1 cut(s) 1273
BslFI GGGAC 2 cut(s) 52, 1265
BslI CCNNNNNNNGG 3 cut(s) 104, 988, 1273
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 2 cut(s) 52, 1265
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 1 cut(s) 1443
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 421, 1335
Bsp143I GATC 6 cut(s) 172, 524, 581, 670, 838, 943
Bsp68I TCGCGA 1 cut(s) 780
BspACI CCGC 2 cut(s) 1157, 1444
BspANI GGCC 1 cut(s) 1443
BspCNI CTCAG 4 cut(s) 124, 667, 907, 1380
BspFNI CGCG 1 cut(s) 780
BspLI GGNNCC 2 cut(s) 1145, 1161
BspMAI CTGCAG 1 cut(s) 1231
BspPI GGATC 3 cut(s) 167, 532, 589
BspT104I TTCGAA 1 cut(s) 305
BsrDI GCAATG 4 cut(s) 171, 736, 993, 1122
BssMI GATC 6 cut(s) 172, 524, 581, 670, 838, 943
BssNAI GTATAC 1 cut(s) 1416
BssNI GRCGYC 1 cut(s) 88
BssSI CACGAG 1 cut(s) 474
Bst1107I GTATAC 1 cut(s) 1416
Bst2BI CACGAG 1 cut(s) 474
Bst2UI CCWGG 3 cut(s) 177, 757, 983
Bst4CI ACNGT 2 cut(s) 1247, 1450
Bst6I CTCTTC 3 cut(s) 1036, 1227, 1429
BstACI GRCGYC 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 1109
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 324, 351, 831
BstDEI CTNAG 5 cut(s) 132, 654, 870, 915, 1367
BstEII GGTNACC 1 cut(s) 1241
BstENI CCTNNNNNAGG 1 cut(s) 986
BstF5I GGATG 2 cut(s) 664, 823
BstFNI CGCG 1 cut(s) 780
BstKTI GATC 6 cut(s) 175, 527, 584, 673, 841, 946
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 6 cut(s) 172, 524, 581, 670, 838, 943
BstMWI GCNNNNNNNGC 4 cut(s) 965, 1109, 1121, 1235
BstNI CCWGG 3 cut(s) 177, 757, 983
BstNSI RCATGY 2 cut(s) 353, 605
BstPI GGTNACC 1 cut(s) 1241
BstSCI CCNGG 4 cut(s) 175, 755, 981, 1272
BstSFI CTRYAG 2 cut(s) 274, 1227
BstUI CGCG 1 cut(s) 780
BstV1I GCAGC 5 cut(s) 943, 1087, 1099, 1111, 1185
BstX2I RGATCY 3 cut(s) 172, 524, 581
BstYI RGATCY 3 cut(s) 172, 524, 581
BstZ17I GTATAC 1 cut(s) 1416
BsuRI GGCC 1 cut(s) 1443
BtgZI GCGATG 1 cut(s) 761
BtsCI GGATG 2 cut(s) 664, 823
BtsI GCAGTG 3 cut(s) 271, 421, 748
BtsIMutI CAGTG 4 cut(s) 271, 421, 748, 1446
BtuMI TCGCGA 1 cut(s) 780
Cac8I GCNNGC 3 cut(s) 324, 351, 831
Cfr13I GGNCC 2 cut(s) 883, 1160
CseI GACGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 541
CviAII CATG 5 cut(s) 350, 596, 602, 1174, 1303
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 5 cut(s) 132, 654, 870, 915, 1367
DpnI GATC 6 cut(s) 174, 526, 583, 672, 840, 945
DpnII GATC 6 cut(s) 172, 524, 581, 670, 838, 943
DriI GACNNNNNGTC 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 1441
Eam1104I CTCTTC 3 cut(s) 1036, 1227, 1429
Eam1105I GACNNNNNGTC 1 cut(s) 565
EarI CTCTTC 3 cut(s) 1036, 1227, 1429
Eco47I GGWCC 2 cut(s) 883, 1160
Eco91I GGTNACC 1 cut(s) 1241
EcoNI CCTNNNNNAGG 1 cut(s) 986
EcoO109I RGGNCCY 1 cut(s) 1160
EcoO65I GGTNACC 1 cut(s) 1241
EcoRII CCWGG 3 cut(s) 175, 755, 981
FaeI CATG 5 cut(s) 353, 599, 605, 1177, 1306
FaqI GGGAC 2 cut(s) 52, 1265
FatI CATG 5 cut(s) 349, 595, 601, 1173, 1302
FauI CCCGC 1 cut(s) 1150
FauNDI CATATG 1 cut(s) 484
FblI GTMKAC 1 cut(s) 1415
Fnu4HI GCNGC 6 cut(s) 957, 1101, 1113, 1125, 1199, 1444
FokI GGATG 2 cut(s) 671, 830
Fsp4HI GCNGC 6 cut(s) 957, 1101, 1113, 1125, 1199, 1444
FspBI CTAG 1 cut(s) 150
GluI GCNGC 6 cut(s) 957, 1101, 1113, 1125, 1199, 1444
GsuI CTGGAG 2 cut(s) 1004, 1376
HaeIII GGCC 1 cut(s) 1443
HapII CCGG 1 cut(s) 1273
HgaI GACGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 5 cut(s) 353, 599, 605, 1177, 1306
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 827
HpaII CCGG 1 cut(s) 1273
HphI GGTGA 1 cut(s) 1235
Hpy166II GTNNAC 5 cut(s) 643, 704, 773, 1023, 1416
Hpy8I GTNNAC 5 cut(s) 643, 704, 773, 1023, 1416
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 9 cut(s) 66, 198, 301, 782, 802, 982, 1306, 1318, 1378
HpyCH4III ACNGT 2 cut(s) 1247, 1450
HpyCH4V TGCA 8 cut(s) 44, 164, 353, 741, 1103, 1115, 1173, 1229
HpyF10VI GCNNNNNNNGC 4 cut(s) 965, 1109, 1121, 1235
HpyF3I CTNAG 5 cut(s) 132, 654, 870, 915, 1367
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 5 cut(s) 353, 599, 605, 1177, 1306
Kzo9I GATC 6 cut(s) 172, 524, 581, 670, 838, 943
LmnI GCTCC 4 cut(s) 246, 504, 876, 1330
Lsp1109I GCAGC 5 cut(s) 943, 1087, 1099, 1111, 1185
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 1241
MalI GATC 6 cut(s) 174, 526, 583, 672, 840, 945
MboI GATC 6 cut(s) 172, 524, 581, 670, 838, 943
MflI RGATCY 3 cut(s) 172, 524, 581
MhlI GDGCHC 2 cut(s) 421, 1335
MlyI GAGTC 5 cut(s) 11, 136, 554, 897, 1055
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 6 cut(s) 237, 515, 723, 867, 1228, 1345
MseI TTAA 6 cut(s) 72, 227, 894, 978, 1137, 1465
MslI CAYNNNNRTG 4 cut(s) 354, 600, 741, 1307
MspA1I CMGCKG 1 cut(s) 1421
MspI CCGG 1 cut(s) 1273
MspR9I CCNGG 4 cut(s) 177, 757, 983, 1274
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 3 cut(s) 177, 757, 983
MvnI CGCG 1 cut(s) 780
MwoI GCNNNNNNNGC 4 cut(s) 965, 1109, 1121, 1235
NciI CCSGG 1 cut(s) 1274
NdeI CATATG 1 cut(s) 484
NdeII GATC 6 cut(s) 172, 524, 581, 670, 838, 943
NlaIII CATG 5 cut(s) 353, 599, 605, 1177, 1306
NlaIV GGNNCC 2 cut(s) 1145, 1161
NmeAIII GCCGAG 1 cut(s) 1399
NmuCI GTSAC 1 cut(s) 1241
NruI TCGCGA 1 cut(s) 780
NspI RCATGY 2 cut(s) 353, 605
NspV TTCGAA 1 cut(s) 305
PaeI GCATGC 1 cut(s) 353
PciI ACATGT 1 cut(s) 601
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 6 cut(s) 236, 269, 404, 650, 725, 950
PflFI GACNNNGTC 1 cut(s) 887
PfoI TCCNGGA 2 cut(s) 175, 755
PkrI GCNGC 6 cut(s) 958, 1102, 1114, 1126, 1200, 1445
PleI GAGTC 5 cut(s) 11, 135, 554, 896, 1054
PpsI GAGTC 5 cut(s) 11, 135, 554, 896, 1054
PpuMI RGGWCCY 1 cut(s) 1160
PscI ACATGT 1 cut(s) 601
PsiI TTATAA 1 cut(s) 795
Psp5II RGGWCCY 1 cut(s) 1160
Psp6I CCWGG 3 cut(s) 175, 755, 981
PspEI GGTNACC 1 cut(s) 1241
PspGI CCWGG 3 cut(s) 175, 755, 981
PspN4I GGNNCC 2 cut(s) 1145, 1161
PspPI GGNCC 2 cut(s) 883, 1160
PspPPI RGGWCCY 1 cut(s) 1160
PstI CTGCAG 1 cut(s) 1231
PsuI RGATCY 3 cut(s) 172, 524, 581
PsyI GACNNNGTC 1 cut(s) 887
PvuII CAGCTG 1 cut(s) 1421
RruI TCGCGA 1 cut(s) 780
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 4 cut(s) 354, 600, 741, 1307
SaqAI TTAA 6 cut(s) 72, 227, 894, 978, 1137, 1465
SatI GCNGC 6 cut(s) 957, 1101, 1113, 1125, 1199, 1444
Sau3AI GATC 6 cut(s) 172, 524, 581, 670, 838, 943
Sau96I GGNCC 2 cut(s) 883, 1160
SchI GAGTC 5 cut(s) 11, 136, 554, 897, 1055
ScrFI CCNGG 4 cut(s) 177, 757, 983, 1274
SduI GDGCHC 2 cut(s) 421, 1335
SfcI CTRYAG 2 cut(s) 274, 1227
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 2 cut(s) 883, 1160
SmiMI CAYNNNNRTG 4 cut(s) 354, 600, 741, 1307
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
SphI GCATGC 1 cut(s) 353
SsiI CCGC 2 cut(s) 1157, 1444
SspI AATATT 1 cut(s) 449
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 175, 755, 981, 1272
TaaI ACNGT 2 cut(s) 1247, 1450
TaqI TCGA 5 cut(s) 305, 462, 606, 728, 864
TaqII GACCGA 1 cut(s) 900
TauI GCSGC 1 cut(s) 1446
TfiI GAWTC 6 cut(s) 236, 269, 404, 650, 725, 950
Tru1I TTAA 6 cut(s) 72, 227, 894, 978, 1137, 1465
Tru9I TTAA 6 cut(s) 72, 227, 894, 978, 1137, 1465
TscAI CASTG 4 cut(s) 271, 421, 748, 1453
TseFI GTSAC 1 cut(s) 1241
TseI GCWGC 5 cut(s) 956, 1100, 1112, 1124, 1198
Tsp45I GTSAC 1 cut(s) 1241
TspDTI ATGAA 6 cut(s) 105, 375, 735, 837, 936, 1133
TspRI CASTG 4 cut(s) 271, 421, 748, 1453
Tth111I GACNNNGTC 1 cut(s) 887
VpaK11BI GGWCC 2 cut(s) 883, 1160
XagI CCTNNNNNAGG 1 cut(s) 986
XapI RAATTY 5 cut(s) 301, 469, 530, 929, 1289
XceI RCATGY 2 cut(s) 353, 605
XmiI GTMKAC 1 cut(s) 1415
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.