Rh6BG214500

Small acidic protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003825
Physical Location & Seq
Forward (+)
40490051 .. 40493913
3863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG214500.1

Sequence Viewer

Length: 1152 bp
ATGGGCAGGCTGACTACATCAAAAACGACAAGCATGCAGATGATGAAGAAAGAACTAATCAGAAGTTATCTTCTCATTCGGATAGGGAATCAAGGGGCAGTGCTCATTTTGATAATGTTAGGTCAAGATAGTCATTCACGACATTTCGACAAAAATTCTCGTGATAAATATGATGGTTCTGAACATAGGAGCAAGGACAAAGAGAGAGGATCTAAATTTCTTGAGTACCAGAAATATAAAGATGACTCATTGTCAGAAAGAGTTGGATCTGGTAGAAGTCATGGACATGTCGAAGATATGGAAAGGGAGAGAGATAGGCATAAAGTTGACAGAGATTCTCAGGATGAGAAAAGAGATCATCGTAGGAGTTCGGGATACTTTAGAAGTGAACGAAATCTCTCCTATGAAGAATCGAGTGGGCATTGCAGTGGCTCAATTTCCAGGAGAGATGATAGTAAACATCGCGAGAGTGAAGGTTATAAGAGTGATTTGAAGGAAATGGATGATGAAAAGCTTGCGAGAGATCAAAGGAAGAAATATGATGATATCGAAACTAAGAGGAGCAAGGACCGAGTCATTAAAGAACCAACAGAGCGTTCTGAGAATGAAGATAAATTTAGGAGTGAAGATCAAGAATCTGCTGCGAAACGAGCAAAGTTTTTTAACCTGGAGAAGGGCATTGCTGGTCGGAAAGATGTTTCCAAGTTCACAACTACATCTGATGGAAGAGAGTCGTCAAGTTCCAAGCAAGTTCAAGATGGTAAAATGGAGAATGACATAAATGCTGCAAAAGTTGCTGCAATGAAAGCTGCTGAATTGGTTAATAGGAACCTTGCTGGTGCGGGTCCTGTGGGTTGCATGACTGCTGACCAAAAGAAAAAGCTGTTGTGGGGCAACAAAAAGAACACAACTGCAGAAGAGGCTGGTCACCGTTGGGACACGGCTTTGTTCCCTGACCGGGAAAGACAAGAAAAATTCAAAAAACTCATGGGTGTGAAGGGCGAATTGAAGGTGGAGCACAACCCCGACAACCAAGAGGGCACCAATCTTCTCAGAGCCGAGAAGCAGAAGGAACTCCAGCAGGATTTGGAGAAGCAGTATACAGCTGGACTGCGAAGAAGAGATGGCCGCACTGTTGGTTTAGGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMAP

Protein Analysis

383

Amino Acids

44.1

Weight (kDa)

9.34

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMAP PF15477 312 - 382 2.4e-17 Small acidic protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 480
AccB1I GGYRCC 1 cut(s) 1040
AccI GTMKAC 1 cut(s) 1100
AccII CGCG 1 cut(s) 465
AciI CCGC 2 cut(s) 842, 1129
AclWI GGATC 2 cut(s) 217, 274
AcoI YGGCCR 1 cut(s) 1126
AcsI RAATTY 4 cut(s) 154, 215, 614, 974
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 673, 958
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 4 cut(s) 493, 755, 979, 1009
AhdI GACNNNNNGTC 1 cut(s) 250
AjnI CCWGG 2 cut(s) 440, 666
AjuI GAANNNNNNNTTGG 2 cut(s) 580, 612
AluBI AGCT 4 cut(s) 514, 809, 883, 1106
AluI AGCT 4 cut(s) 514, 809, 883, 1106
Alw21I GWGCWC 2 cut(s) 105, 1020
AlwI GGATC 2 cut(s) 217, 274
AoxI GGCC 1 cut(s) 1126
ApeKI GCWGC 4 cut(s) 641, 785, 797, 809
ApoI RAATTY 4 cut(s) 154, 215, 614, 974
AspS9I GGNCC 2 cut(s) 568, 845
AsuC2I CCSGG 1 cut(s) 959
AsuHPI GGTGA 1 cut(s) 920
AvaII GGWCC 2 cut(s) 568, 845
BaeGI GKGCMC 1 cut(s) 1043
BanI GGYRCC 1 cut(s) 1040
BauI CACGAG 1 cut(s) 159
Bbv12I GWGCWC 2 cut(s) 105, 1020
BbvI GCAGC 4 cut(s) 628, 772, 784, 796
BccI CCATC 4 cut(s) 167, 716, 752, 1118
BceAI ACGGC 1 cut(s) 957
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciT130I CCWGG 2 cut(s) 442, 668
BciVI GTATCC 1 cut(s) 368
BcnI CCSGG 1 cut(s) 959
BfmI CTRYAG 1 cut(s) 912
BfuI GTATCC 1 cut(s) 368
BisI GCNGC 5 cut(s) 642, 786, 798, 810, 1129
BlsI GCNGC 5 cut(s) 643, 787, 799, 811, 1130
Bme1390I CCNGG 3 cut(s) 442, 668, 959
Bme18I GGWCC 2 cut(s) 568, 845
BmeRI GACNNNNNGTC 1 cut(s) 250
BmgT120I GGNCC 2 cut(s) 568, 845
BmiI GGNNCC 3 cut(s) 830, 846, 1042
BmrFI CCNGG 3 cut(s) 442, 668, 959
BpmI CTGGAG 2 cut(s) 689, 1061
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 959
BsaXI ACNNNNNCTCC 2 cut(s) 1082, 1112
Bsc4I CCNNNNNNNGG 2 cut(s) 673, 958
Bse3DI GCAATG 3 cut(s) 421, 678, 807
BseBI CCWGG 2 cut(s) 442, 668
BseGI GGATG 2 cut(s) 349, 508
BseLI CCNNNNNNNGG 2 cut(s) 673, 958
BseMI GCAATG 3 cut(s) 421, 678, 807
BseMII CTCAG 3 cut(s) 353, 591, 1066
BseRI GAGGAG 1 cut(s) 574
BseSI GKGCMC 1 cut(s) 1043
BseXI GCAGC 4 cut(s) 628, 772, 784, 796
Bsh1236I CGCG 1 cut(s) 465
BshFI GGCC 1 cut(s) 1128
BshNI GGYRCC 1 cut(s) 1040
BsiHKAI GWGCWC 2 cut(s) 105, 1020
BsiSI CCGG 1 cut(s) 958
BslFI GGGAC 1 cut(s) 950
BslI CCNNNNNNNGG 2 cut(s) 673, 958
BsmFI GGGAC 1 cut(s) 950
BsnI GGCC 1 cut(s) 1128
Bsp1286I GDGCHC 3 cut(s) 105, 1020, 1043
Bsp143I GATC 5 cut(s) 209, 266, 355, 523, 628
Bsp68I TCGCGA 1 cut(s) 465
BspACI CCGC 2 cut(s) 842, 1129
BspANI GGCC 1 cut(s) 1128
BspCNI CTCAG 3 cut(s) 352, 592, 1065
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 3 cut(s) 830, 846, 1042
BspMAI CTGCAG 1 cut(s) 916
BspPI GGATC 2 cut(s) 217, 274
BspT107I GGYRCC 1 cut(s) 1040
BsrDI GCAATG 3 cut(s) 421, 678, 807
BssMI GATC 5 cut(s) 209, 266, 355, 523, 628
BssNAI GTATAC 1 cut(s) 1101
BssSI CACGAG 1 cut(s) 159
Bst1107I GTATAC 1 cut(s) 1101
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 2 cut(s) 442, 668
Bst4CI ACNGT 2 cut(s) 932, 1135
Bst6I CTCTTC 3 cut(s) 721, 912, 1114
BstAPI GCANNNNNTGC 1 cut(s) 794
BstC8I GCNNGC 3 cut(s) 8, 35, 516
BstDEI CTNAG 4 cut(s) 339, 555, 600, 1052
BstEII GGTNACC 1 cut(s) 926
BstENI CCTNNNNNAGG 1 cut(s) 671
BstF5I GGATG 2 cut(s) 349, 508
BstFNI CGCG 1 cut(s) 465
BstKTI GATC 5 cut(s) 212, 269, 358, 526, 631
BstMBI GATC 5 cut(s) 209, 266, 355, 523, 628
BstMWI GCNNNNNNNGC 4 cut(s) 650, 794, 806, 920
BstNI CCWGG 2 cut(s) 442, 668
BstNSI RCATGY 2 cut(s) 37, 290
BstPI GGTNACC 1 cut(s) 926
BstSCI CCNGG 3 cut(s) 440, 666, 957
BstSFI CTRYAG 1 cut(s) 912
BstSLI GKGCMC 1 cut(s) 1043
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 4 cut(s) 628, 772, 784, 796
BstX2I RGATCY 2 cut(s) 209, 266
BstYI RGATCY 2 cut(s) 209, 266
BstZ17I GTATAC 1 cut(s) 1101
BsuI GTATCC 1 cut(s) 368
BsuRI GGCC 1 cut(s) 1128
BtgZI GCGATG 1 cut(s) 446
BtsCI GGATG 2 cut(s) 349, 508
BtsI GCAGTG 2 cut(s) 105, 433
BtsIMutI CAGTG 3 cut(s) 105, 433, 1131
BtuMI TCGCGA 1 cut(s) 465
Cac8I GCNNGC 3 cut(s) 8, 35, 516
Cfr13I GGNCC 2 cut(s) 568, 845
Csp6I GTAC 1 cut(s) 226
CviAII CATG 5 cut(s) 34, 281, 287, 859, 988
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 4 cut(s) 339, 555, 600, 1052
DpnI GATC 5 cut(s) 211, 268, 357, 525, 630
DpnII GATC 5 cut(s) 209, 266, 355, 523, 628
DriI GACNNNNNGTC 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 1126
Eam1104I CTCTTC 3 cut(s) 721, 912, 1114
Eam1105I GACNNNNNGTC 1 cut(s) 250
EarI CTCTTC 3 cut(s) 721, 912, 1114
Eco32I GATATC 1 cut(s) 547
Eco47I GGWCC 2 cut(s) 568, 845
Eco91I GGTNACC 1 cut(s) 926
EcoNI CCTNNNNNAGG 1 cut(s) 671
EcoO109I RGGNCCY 1 cut(s) 845
EcoO65I GGTNACC 1 cut(s) 926
EcoRII CCWGG 2 cut(s) 440, 666
EcoRV GATATC 1 cut(s) 547
FaeI CATG 5 cut(s) 37, 284, 290, 862, 991
FaqI GGGAC 1 cut(s) 950
FatI CATG 5 cut(s) 33, 280, 286, 858, 987
FauI CCCGC 1 cut(s) 835
FblI GTMKAC 1 cut(s) 1100
Fnu4HI GCNGC 5 cut(s) 642, 786, 798, 810, 1129
FokI GGATG 2 cut(s) 356, 515
Fsp4HI GCNGC 5 cut(s) 642, 786, 798, 810, 1129
GluI GCNGC 5 cut(s) 642, 786, 798, 810, 1129
GsuI CTGGAG 2 cut(s) 689, 1061
HaeIII GGCC 1 cut(s) 1128
HapII CCGG 1 cut(s) 958
Hin1II CATG 5 cut(s) 37, 284, 290, 862, 991
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 7 cut(s) 88, 245, 335, 410, 573, 635, 731
HpaII CCGG 1 cut(s) 958
HphI GGTGA 1 cut(s) 920
Hpy166II GTNNAC 5 cut(s) 328, 389, 458, 708, 1101
Hpy188I TCNGA 8 cut(s) 62, 81, 181, 256, 601, 690, 721, 1055
Hpy188III TCNNGA 9 cut(s) 125, 138, 161, 221, 341, 372, 464, 632, 755
Hpy8I GTNNAC 5 cut(s) 328, 389, 458, 708, 1101
HpyAV CCTTC 6 cut(s) 467, 487, 667, 991, 1003, 1063
HpyCH4III ACNGT 2 cut(s) 932, 1135
HpyCH4V TGCA 6 cut(s) 37, 426, 788, 800, 858, 914
HpyF10VI GCNNNNNNNGC 4 cut(s) 650, 794, 806, 920
HpyF3I CTNAG 4 cut(s) 339, 555, 600, 1052
Hsp92II CATG 5 cut(s) 37, 284, 290, 862, 991
Kzo9I GATC 5 cut(s) 209, 266, 355, 523, 628
LmnI GCTCC 3 cut(s) 189, 561, 1015
Lsp1109I GCAGC 4 cut(s) 628, 772, 784, 796
MaeIII GTNAC 1 cut(s) 926
MalI GATC 5 cut(s) 211, 268, 357, 525, 630
MboI GATC 5 cut(s) 209, 266, 355, 523, 628
MflI RGATCY 2 cut(s) 209, 266
MhlI GDGCHC 3 cut(s) 105, 1020, 1043
MluCI AATT 7 cut(s) 154, 215, 435, 614, 815, 974, 1004
MlyI GAGTC 3 cut(s) 239, 582, 740
MmeI TCCRAC 2 cut(s) 244, 668
MnlI CCTC 4 cut(s) 200, 552, 913, 1030
MseI TTAA 4 cut(s) 579, 663, 822, 1150
MslI CAYNNNNRTG 4 cut(s) 38, 285, 426, 992
MspA1I CMGCKG 1 cut(s) 1106
MspI CCGG 1 cut(s) 958
MspR9I CCNGG 3 cut(s) 442, 668, 959
MvaI CCWGG 2 cut(s) 442, 668
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 4 cut(s) 650, 794, 806, 920
NciI CCSGG 1 cut(s) 959
NdeII GATC 5 cut(s) 209, 266, 355, 523, 628
NlaIII CATG 5 cut(s) 37, 284, 290, 862, 991
NlaIV GGNNCC 3 cut(s) 830, 846, 1042
NmeAIII GCCGAG 1 cut(s) 1084
NmuCI GTSAC 1 cut(s) 926
NruI TCGCGA 1 cut(s) 465
NspI RCATGY 2 cut(s) 37, 290
PaeI GCATGC 1 cut(s) 37
PciI ACATGT 1 cut(s) 286
PfeI GAWTC 4 cut(s) 88, 335, 410, 635
PflFI GACNNNGTC 1 cut(s) 572
PfoI TCCNGGA 1 cut(s) 440
PkrI GCNGC 5 cut(s) 643, 787, 799, 811, 1130
PleI GAGTC 3 cut(s) 239, 581, 739
PpsI GAGTC 3 cut(s) 239, 581, 739
PpuMI RGGWCCY 1 cut(s) 845
PscI ACATGT 1 cut(s) 286
PsiI TTATAA 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 845
Psp6I CCWGG 2 cut(s) 440, 666
PspEI GGTNACC 1 cut(s) 926
PspGI CCWGG 2 cut(s) 440, 666
PspN4I GGNNCC 3 cut(s) 830, 846, 1042
PspPI GGNCC 2 cut(s) 568, 845
PspPPI RGGWCCY 1 cut(s) 845
PstI CTGCAG 1 cut(s) 916
PsuI RGATCY 2 cut(s) 209, 266
PsyI GACNNNGTC 1 cut(s) 572
PvuII CAGCTG 1 cut(s) 1106
RruI TCGCGA 1 cut(s) 465
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 4 cut(s) 38, 285, 426, 992
SaqAI TTAA 4 cut(s) 579, 663, 822, 1150
SatI GCNGC 5 cut(s) 642, 786, 798, 810, 1129
Sau3AI GATC 5 cut(s) 209, 266, 355, 523, 628
Sau96I GGNCC 2 cut(s) 568, 845
SchI GAGTC 3 cut(s) 239, 582, 740
ScrFI CCNGG 3 cut(s) 442, 668, 959
SduI GDGCHC 3 cut(s) 105, 1020, 1043
SfcI CTRYAG 1 cut(s) 912
SinI GGWCC 2 cut(s) 568, 845
SmiMI CAYNNNNRTG 4 cut(s) 38, 285, 426, 992
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SphI GCATGC 1 cut(s) 37
Sse9I AATT 7 cut(s) 154, 215, 435, 614, 815, 974, 1004
SsiI CCGC 2 cut(s) 842, 1129
StyD4I CCNGG 3 cut(s) 440, 666, 957
TaaI ACNGT 2 cut(s) 932, 1135
TaqI TCGA 4 cut(s) 147, 291, 413, 549
TaqII GACCGA 1 cut(s) 585
TasI AATT 7 cut(s) 154, 215, 435, 614, 815, 974, 1004
TauI GCSGC 1 cut(s) 1131
TfiI GAWTC 4 cut(s) 88, 335, 410, 635
Tru1I TTAA 4 cut(s) 579, 663, 822, 1150
Tru9I TTAA 4 cut(s) 579, 663, 822, 1150
TscAI CASTG 3 cut(s) 105, 433, 1138
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 4 cut(s) 641, 785, 797, 809
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 5 cut(s) 59, 420, 522, 621, 818
TspRI CASTG 3 cut(s) 105, 433, 1138
Tth111I GACNNNGTC 1 cut(s) 572
VpaK11BI GGWCC 2 cut(s) 568, 845
XagI CCTNNNNNAGG 1 cut(s) 671
XapI RAATTY 4 cut(s) 154, 215, 614, 974
XceI RCATGY 2 cut(s) 37, 290
XmiI GTMKAC 1 cut(s) 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.