Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003825

Physical Location & Seq

Genomic Coordinates Forward (+)

12367901 .. 12372561

Gene Structure 4661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGATTCAAACTTAGACCCTCCGTCCACAGACAAGGGGATTGCAGTTTCCGGGCCTTCAAAAGATAAAGTTAAAAGGAATTATCGGCACCGATCTCCAGGGAGTCCTGAGCACAACAACAGCTCTAGCCCAAAACCTTCAAGAGGAGATCCTGGAAAAATCTCTGAACATCAACCGAGAAGGAAAGATGATGGGAAAGAATTAAATAATGATTCCGAGAGGAGCTATAGGCATTCTGATAGGCAGTCCAGAAATTCAAAGGGTTACTATGCGCATCCTGACTACATCAAAGATGAGAAGCATGCAGATGATGAAGAAAGAATTAATCAGAAGTCAACTTTTCATCCGGGTAGGGAATCAAGGGGCAACACTCATTTTGATCCTGTCAGGTCAAGAAACCATTCACGGTACCTCAATAAAGATTCTCAAGATAAATATGATAGTTTTGAACATAGGAGCAGGGATAAAGACAGAGGATCTAGATTTCTCGATTACAAAAAATATAAAGATGACTCATTGTCAGAAAGACTTGGATCTGGTAAAAGTGTTGGACATTTTGAAGATATGGAAAGTGAGAGATATAGGCATAGAGCAGACAGAGATTCTCAAGATGAGAAAAGAGATTATCGTAGAAGTTCAAGAAGCGAAAGGAATTTCTCTTATGAAGAGTCTATGGGGCATCGAAGTGAGTCAATTTCAAGGAGAGATGACATTAAACATCGTGAGAGTGAAGGTTATAAGAGTCACCTGAAGGAAATGGATGATGAAAAGCTTGAAAGGGATCAAAGAAAGAAATATGATGATACCGAAACTAAGAGGAGCAAGGACCAAATCACTAAAGAGCCTACAGAGAGTTATGAGAATAAAGATATGTGTAGGAGTCAAGATCAAGGATCTGCTGCAAAACGATCAAAGTTTTATAACTTGGACAGGGGCATTGCTGGTCAGGAAGATGTTTCCAAGTTCACAACTACATCTGATGGAAGGGACTCTTCAAGTTCCAAGCAAATTCAAGATGGTAAACTGGAGAATGACATAAATGCTGCAAAAGTTGCTGCAATGAAAGCTGCCGAATTGGTAAATAGGAACCTTGCTGGTGCGGGTCCTGCAGGTTGCCTAACTGCTGACCAAAAGAAAAAGCTGCTGTGGGGCAATAAAAAGAACACAACTGCAGAAGAGGTCACCGTTGGGACACGGCTTTGTTTCCTGACCGGGAAAGACAAGAAAAGTTCAAGAAACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMAP

Protein Analysis

415

Amino Acids

47.7

Weight (kDa)

9.24

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720 AT3G56720
fragaria_vesca	FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070 FvH4_2g14070
malus_domestica	MD14G1089900.v1.1
prunus_persica	Prupe.7G034100_v2.0.a1
pyrus_communis	pycom12g08390
rosa_chinensis	RchiOBHm_Chr6g0276151
rosa_laevigata	RLG00000013413
rosa_multiflora	Rmu_ssc0000201.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192520
rosa_rugosa	Rorug06G0098300 Rorug06G0098400 Rorug06G0098500
rosa_samantha	Rh6AG210300 Rh6BG214400 Rh6BG214500 Rh6CG217200 Rh6DG206500 Rh6DG206700
rosa_wichuraiana	Rw6G018320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	738, 921
Acc16I	TGCGCA	1 cut(s)	273
Acc36I	ACCTGC	1 cut(s)	1100
Acc65I	GGTACC	1 cut(s)	408
AccB1I	GGYRCC	2 cut(s)	87, 408
AciI	CCGC	1 cut(s)	1100
AclWI	GGATC	6 cut(s)	143, 374, 484, 541, 789, 901
AcsI	RAATTY	3 cut(s)	253, 652, 1008
AcuI	CTGAAG	1 cut(s)	770
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	143
AhdI	GACNNNNNGTC	2 cut(s)	22, 517
AjnI	CCWGG	2 cut(s)	97, 151
AluBI	AGCT	5 cut(s)	123, 225, 772, 1067, 1141
AluI	AGCT	5 cut(s)	123, 225, 772, 1067, 1141
Alw21I	GWGCWC	1 cut(s)	114
AlwI	GGATC	6 cut(s)	143, 374, 484, 541, 789, 901
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	5 cut(s)	899, 1043, 1055, 1067, 1141
ApoI	RAATTY	3 cut(s)	253, 652, 1008
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	400
Asp718I	GGTACC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	53, 826, 1103
AsuC2I	CCSGG	3 cut(s)	52, 348, 1213
AsuHPI	GGTGA	2 cut(s)	737, 1174
AvaII	GGWCC	2 cut(s)	826, 1103
BanI	GGYRCC	2 cut(s)	87, 408
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	5 cut(s)	886, 1030, 1042, 1054, 1128
BccI	CCATC	3 cut(s)	185, 974, 1010
BceAI	ACGGC	1 cut(s)	1211
BciT130I	CCWGG	2 cut(s)	99, 153
BcnI	CCSGG	3 cut(s)	52, 348, 1213
BfaI	CTAG	2 cut(s)	126, 480
BfmI	CTRYAG	4 cut(s)	226, 846, 1107, 1170
BfuAI	ACCTGC	1 cut(s)	1100
BisI	GCNGC	5 cut(s)	900, 1044, 1056, 1068, 1142
BlsI	GCNGC	5 cut(s)	901, 1045, 1057, 1069, 1143
Bme1390I	CCNGG	5 cut(s)	52, 99, 153, 348, 1213
Bme18I	GGWCC	2 cut(s)	826, 1103
BmeRI	GACNNNNNGTC	2 cut(s)	22, 517
BmgT120I	GGNCC	3 cut(s)	53, 826, 1103
BmiI	GGNNCC	4 cut(s)	89, 410, 1088, 1104
BmrFI	CCNGG	5 cut(s)	52, 99, 153, 348, 1213
BmsI	GCATC	2 cut(s)	283, 688
BpmI	CTGGAG	2 cut(s)	81, 1046
Bpu10I	CCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	2 cut(s)	411, 591
BpuMI	CCSGG	3 cut(s)	52, 348, 1213
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	1029
Bse3DI	GCAATG	2 cut(s)	936, 1065
BseBI	CCWGG	2 cut(s)	99, 153
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	3 cut(s)	274, 343, 766
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	2 cut(s)	936, 1065
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	1029
BseRI	GAGGAG	3 cut(s)	159, 235, 832
BseXI	GCAGC	5 cut(s)	886, 1030, 1042, 1054, 1128
BshFI	GGCC	1 cut(s)	55
BshNI	GGYRCC	2 cut(s)	87, 408
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	3 cut(s)	51, 347, 1212
BslFI	GGGAC	2 cut(s)	1001, 1204
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	1001, 1204
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	9 cut(s)	92, 148, 379, 476, 533, 781, 886, 893, 908
BspACI	CCGC	1 cut(s)	1100
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	1241
BspLI	GGNNCC	4 cut(s)	89, 410, 1088, 1104
BspMAI	CTGCAG	2 cut(s)	1111, 1174
BspMI	ACCTGC	1 cut(s)	1100
BspPI	GGATC	6 cut(s)	143, 374, 484, 541, 789, 901
BspT107I	GGYRCC	2 cut(s)	87, 408
BsrDI	GCAATG	2 cut(s)	936, 1065
BsrI	ACTGG	1 cut(s)	1029
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	9 cut(s)	92, 148, 379, 476, 533, 781, 886, 893, 908
Bst2UI	CCWGG	2 cut(s)	99, 153
Bst4CI	ACNGT	2 cut(s)	408, 1186
Bst6I	CTCTTC	3 cut(s)	660, 997, 1170
BstAPI	GCANNNNNTGC	1 cut(s)	1052
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	3 cut(s)	13, 108, 813
BstEII	GGTNACC	1 cut(s)	1180
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	3 cut(s)	274, 343, 766
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	9 cut(s)	95, 151, 382, 479, 536, 784, 889, 896, 911
BstMBI	GATC	9 cut(s)	92, 148, 379, 476, 533, 781, 886, 893, 908
BstMWI	GCNNNNNNNGC	3 cut(s)	1052, 1064, 1106
BstNI	CCWGG	2 cut(s)	99, 153
BstNSI	RCATGY	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	1180
BstSCI	CCNGG	5 cut(s)	50, 97, 151, 346, 1211
BstSFI	CTRYAG	4 cut(s)	226, 846, 1107, 1170
BstV1I	GCAGC	5 cut(s)	886, 1030, 1042, 1054, 1128
BstX2I	RGATCY	4 cut(s)	148, 476, 533, 893
BstYI	RGATCY	4 cut(s)	148, 476, 533, 893
BsuRI	GGCC	1 cut(s)	55
BtsCI	GGATG	3 cut(s)	274, 343, 766
BveI	ACCTGC	1 cut(s)	1100
Cac8I	GCNNGC	1 cut(s)	303
CciI	TCATGA	1 cut(s)	1241
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	3 cut(s)	53, 826, 1103
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	2 cut(s)	302, 1242
CviJI	RGCY	9 cut(s)	55, 123, 129, 225, 772, 844, 1067, 1141, 1198
CviKI_1	RGCY	9 cut(s)	55, 123, 129, 225, 772, 844, 1067, 1141, 1198
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	3 cut(s)	13, 108, 813
DpnI	GATC	9 cut(s)	94, 150, 381, 478, 535, 783, 888, 895, 910
DpnII	GATC	9 cut(s)	92, 148, 379, 476, 533, 781, 886, 893, 908
DriI	GACNNNNNGTC	2 cut(s)	22, 517
Eam1104I	CTCTTC	3 cut(s)	660, 997, 1170
Eam1105I	GACNNNNNGTC	2 cut(s)	22, 517
EarI	CTCTTC	3 cut(s)	660, 997, 1170
Eco47I	GGWCC	2 cut(s)	826, 1103
Eco57I	CTGAAG	1 cut(s)	770
Eco91I	GGTNACC	1 cut(s)	1180
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	1103
EcoO65I	GGTNACC	1 cut(s)	1180
EcoRII	CCWGG	2 cut(s)	97, 151
FaeI	CATG	2 cut(s)	305, 1245
FalI	AAGNNNNNCTT	2 cut(s)	976, 1008
FaqI	GGGAC	2 cut(s)	1001, 1204
FatI	CATG	2 cut(s)	301, 1241
FauI	CCCGC	1 cut(s)	1093
Fnu4HI	GCNGC	5 cut(s)	900, 1044, 1056, 1068, 1142
FokI	GGATG	3 cut(s)	261, 330, 773
Fsp4HI	GCNGC	5 cut(s)	900, 1044, 1056, 1068, 1142
FspAI	RTGCGCAY	1 cut(s)	273
FspBI	CTAG	2 cut(s)	126, 480
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	5 cut(s)	900, 1044, 1056, 1068, 1142
GsuI	CTGGAG	2 cut(s)	81, 1046
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	3 cut(s)	51, 347, 1212
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	2 cut(s)	305, 1245
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HindIII	AAGCTT	1 cut(s)	770
HpaII	CCGG	3 cut(s)	51, 347, 1212
HphI	GGTGA	2 cut(s)	737, 1174
Hpy166II	GTNNAC	4 cut(s)	27, 336, 966, 1022
Hpy188I	TCNGA	6 cut(s)	166, 217, 238, 330, 523, 979
Hpy8I	GTNNAC	4 cut(s)	27, 336, 966, 1022
HpyAV	CCTTC	6 cut(s)	66, 147, 174, 725, 745, 978
HpyCH4III	ACNGT	2 cut(s)	408, 1186
HpyCH4V	TGCA	7 cut(s)	44, 305, 902, 1046, 1058, 1109, 1172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1052, 1064, 1106
HpyF3I	CTNAG	3 cut(s)	13, 108, 813
Hsp92II	CATG	2 cut(s)	305, 1245
HspAI	GCGC	1 cut(s)	272
KpnI	GGTACC	1 cut(s)	412
Kzo9I	GATC	9 cut(s)	92, 148, 379, 476, 533, 781, 886, 893, 908
LmnI	GCTCC	3 cut(s)	222, 456, 819
Lsp1109I	GCAGC	5 cut(s)	886, 1030, 1042, 1054, 1128
LweI	GCATC	2 cut(s)	283, 688
MaeI	CTAG	2 cut(s)	126, 480
MaeIII	GTNAC	3 cut(s)	263, 743, 1180
MalI	GATC	9 cut(s)	94, 150, 381, 478, 535, 783, 888, 895, 910
MboI	GATC	9 cut(s)	92, 148, 379, 476, 533, 781, 886, 893, 908
MboII	GAAGA	6 cut(s)	326, 572, 677, 962, 984, 1187
MflI	RGATCY	4 cut(s)	148, 476, 533, 893
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	8 cut(s)	79, 200, 253, 321, 652, 693, 1008, 1073
MlyI	GAGTC	7 cut(s)	112, 506, 677, 698, 751, 889, 983
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	7 cut(s)	30, 137, 213, 422, 467, 810, 1171
MroXI	GAANNNNTTC	1 cut(s)	400
MseI	TTAA	4 cut(s)	72, 203, 324, 714
MslI	CAYNNNNRTG	2 cut(s)	306, 684
MspI	CCGG	3 cut(s)	51, 347, 1212
MspR9I	CCNGG	5 cut(s)	52, 99, 153, 348, 1213
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	2 cut(s)	99, 153
MwoI	GCNNNNNNNGC	3 cut(s)	1052, 1064, 1106
NciI	CCSGG	3 cut(s)	52, 348, 1213
NdeII	GATC	9 cut(s)	92, 148, 379, 476, 533, 781, 886, 893, 908
NlaIII	CATG	2 cut(s)	305, 1245
NlaIV	GGNNCC	4 cut(s)	89, 410, 1088, 1104
NmuCI	GTSAC	2 cut(s)	743, 1180
NsbI	TGCGCA	1 cut(s)	273
NspI	RCATGY	1 cut(s)	305
PaeI	GCATGC	1 cut(s)	305
PagI	TCATGA	1 cut(s)	1241
PctI	GAATGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	5 cut(s)	5, 212, 356, 422, 602
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	5 cut(s)	901, 1045, 1057, 1069, 1143
PleI	GAGTC	7 cut(s)	111, 506, 676, 697, 750, 888, 983
PpsI	GAGTC	7 cut(s)	111, 506, 676, 697, 750, 888, 983
PpuMI	RGGWCCY	1 cut(s)	1103
PshBI	ATTAAT	1 cut(s)	324
PsiI	TTATAA	2 cut(s)	738, 921
Psp5II	RGGWCCY	1 cut(s)	1103
Psp6I	CCWGG	2 cut(s)	97, 151
PspEI	GGTNACC	1 cut(s)	1180
PspGI	CCWGG	2 cut(s)	97, 151
PspN4I	GGNNCC	4 cut(s)	89, 410, 1088, 1104
PspPI	GGNCC	3 cut(s)	53, 826, 1103
PspPPI	RGGWCCY	1 cut(s)	1103
PstI	CTGCAG	2 cut(s)	1111, 1174
PsuI	RGATCY	4 cut(s)	148, 476, 533, 893
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	2 cut(s)	306, 684
SaqAI	TTAA	4 cut(s)	72, 203, 324, 714
SatI	GCNGC	5 cut(s)	900, 1044, 1056, 1068, 1142
Sau3AI	GATC	9 cut(s)	92, 148, 379, 476, 533, 781, 886, 893, 908
Sau96I	GGNCC	3 cut(s)	53, 826, 1103
SbfI	CCTGCAGG	1 cut(s)	1111
SchI	GAGTC	7 cut(s)	112, 506, 677, 698, 751, 889, 983
ScrFI	CCNGG	5 cut(s)	52, 99, 153, 348, 1213
SdaI	CCTGCAGG	1 cut(s)	1111
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	283, 688
SfcI	CTRYAG	4 cut(s)	226, 846, 1107, 1170
SinI	GGWCC	2 cut(s)	826, 1103
SmiMI	CAYNNNNRTG	2 cut(s)	306, 684
SmlI	CTYRAG	2 cut(s)	426, 606
SmoI	CTYRAG	2 cut(s)	426, 606
SphI	GCATGC	1 cut(s)	305
Sse8387I	CCTGCAGG	1 cut(s)	1111
Sse9I	AATT	8 cut(s)	79, 200, 253, 321, 652, 693, 1008, 1073
SsiI	CCGC	1 cut(s)	1100
SspMI	CTAG	2 cut(s)	126, 480
StyD4I	CCNGG	5 cut(s)	50, 97, 151, 346, 1211
TaaI	ACNGT	2 cut(s)	408, 1186
TaqI	TCGA	2 cut(s)	489, 682
TasI	AATT	8 cut(s)	79, 200, 253, 321, 652, 693, 1008, 1073
TfiI	GAWTC	5 cut(s)	5, 212, 356, 422, 602
Tru1I	TTAA	4 cut(s)	72, 203, 324, 714
Tru9I	TTAA	4 cut(s)	72, 203, 324, 714
TseFI	GTSAC	2 cut(s)	743, 1180
TseI	GCWGC	5 cut(s)	899, 1043, 1055, 1067, 1141
Tsp45I	GTSAC	2 cut(s)	743, 1180
TspDTI	ATGAA	5 cut(s)	327, 332, 678, 780, 1076
TspGWI	ACGGA	1 cut(s)	12
VpaK11BI	GGWCC	2 cut(s)	826, 1103
VspI	ATTAAT	1 cut(s)	324
XagI	CCTNNNNNAGG	1 cut(s)	141
XapI	RAATTY	3 cut(s)	253, 652, 1008
XbaI	TCTAGA	1 cut(s)	479
XceI	RCATGY	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	2 cut(s)	126, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.