Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006449

Physical Location & Seq

Genomic Coordinates Reverse (-)

21181642 .. 21183144

Gene Structure 1503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAAGATGTGTAATGGATCCAGTTTCTTAGCCTCATTACCACTGTTATTGCTTCTTCTCAGCTTCATATTGGCTTCCTTCTTCGACACGGCAGTTGGACAAATCGGAGTGTGCTACGGGAGAAATGGAAACAACCTGCGACCCGCGTCCGAAGTCGTGGCGCTTTACCAACAACGGAACATCCGGCGGATGCGGCTGTACGATCCCAACCAGGAGACTCTCAACGCTCTCCGCGGCTCCAATATCGAGCTCGTGCTCGATGTTCCAAACCCTGATCTCCAGCGTCTCGCCTCCAGCCAAGCGGAAGCCGACACATGGGTCCGCAACAACGTCCGCAACTATGCAAACGTCACATTTCGCTACATCTCTGTCGGGAACGAGGTACAGCCCTCAGACCAAGCTGCGAGCTTTGTCCTCCCCGCGATGCAGAACATAGAGAGAGCAGTTTCAAGCCTCGGGATCAAGGTCTCGACGGCTATAGACACCAGAGGCATTTCCGGGTTTCCGCCGTCAAGTGGGACGTTCACACCGGAGTTTAGGAGCTTTATCGCACCGGTGATAAGTTTCTTGTCAAGCAAGCAATCTCCTCTGCTCGTGAATAATTACCCTTACTTCAGCTACACGGGAAACATGCGAGACATCCGGTTAGACTACACTCTGTTCACCGCACCGTCAACTGTAGTCAATGACGGACAAAACCAATATCGAAACCTATTCCACGCAATCTTAGACACTGTTTACGCATCATTAGAGAAAGCTGGAGGTGGTTCGTTGGAGATCGTGGTGTCCGAGAGTGGTTGGCCGACAGCGGGAGGAGCAGCGACGGGTGTGGATAATGCGAGAACTTATGTGAACAATTTGATACAAACTGTGAAAAATGGATCTCCGAGGAGACCAGGGAGAGCTACAGAGACTTATATATTTGCTATGTTCGATGAGAATTCGAAGCAGGGTCCCGAGACTGAGAAGTTTTGGGGACTGTTTCTTCCAAATCTACAGCCTAAGTATGTTGTCAATTTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0002215 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0008810 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009814 GO:0009817 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

341

Amino Acids

37.63

Weight (kDa)

8.45

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	35 - 340	2.5e-103	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57240 AT3G57270
malus_domestica	MD14G1078700.v1.1 MD14G1079900.v1.1 MD14G1080000.v1.1 MD14G1080100.v1.1
prunus_persica	Prupe.7G051700_v2.0.a1 Prupe.7G051800_v2.0.a1 Prupe.7G051900_v2.0.a1 Prupe.7G052000_v2.0.a1
pyrus_communis	pycom12g07070 pycom14g06760 pycom14g06890 pycom14g06920 pycom14g06930 pycom14g06950
rosa_chinensis	RchiOBHm_Chr7g0178171
rosa_laevigata	RLG00000005465
rosa_multiflora	Rmu_sc0007855.1_g000007
rosa_roxburghii	Rroxscaffold_3G00275110
rosa_rugosa	Rorug06G0413800
rosa_samantha	Rh7AG013500 Rh7BG013400 Rh7CG013300 Rh7DG013600
rosa_wichuraiana	Rw7G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	144
AccII	CGCG	3 cut(s)	146, 234, 422
AclWI	GGATC	5 cut(s)	12, 25, 197, 467, 889
AcoI	YGGCCR	1 cut(s)	800
AcsI	RAATTY	1 cut(s)	940
AcuI	CTGAAG	1 cut(s)	598
AfaI	GTAC	2 cut(s)	200, 384
AfiI	CCNNNNNNNGG	3 cut(s)	315, 515, 809
AgeI	ACCGGT	1 cut(s)	553
AgsI	TTSAA	2 cut(s)	450, 1021
AjnI	CCWGG	2 cut(s)	210, 895
AluBI	AGCT	8 cut(s)	63, 250, 401, 408, 543, 618, 758, 905
AluI	AGCT	8 cut(s)	63, 250, 401, 408, 543, 618, 758, 905
Alw21I	GWGCWC	2 cut(s)	252, 258
Alw26I	GTCTC	7 cut(s)	209, 290, 472, 630, 886, 905, 953
AlwI	GGATC	5 cut(s)	12, 25, 197, 467, 889
Ama87I	CYCGRG	2 cut(s)	455, 956
AoxI	GGCC	1 cut(s)	800
ApeKI	GCWGC	2 cut(s)	401, 818
ApoI	RAATTY	1 cut(s)	940
AsiGI	ACCGGT	1 cut(s)	553
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	319, 953
AsuC2I	CCSGG	1 cut(s)	499
AsuHPI	GGTGA	2 cut(s)	568, 655
AsuII	TTCGAA	1 cut(s)	944
AvaI	CYCGRG	2 cut(s)	455, 956
AvaII	GGWCC	2 cut(s)	319, 953
BamHI	GGATCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	252
BauI	CACGAG	2 cut(s)	251, 593
Bbv12I	GWGCWC	2 cut(s)	252, 258
BbvI	GCAGC	2 cut(s)	388, 830
BceAI	ACGGC	3 cut(s)	105, 489, 493
BciT130I	CCWGG	2 cut(s)	212, 897
BcnI	CCSGG	1 cut(s)	499
BcoDI	GTCTC	7 cut(s)	209, 290, 472, 630, 886, 905, 953
BfmI	CTRYAG	4 cut(s)	477, 678, 906, 995
BfoI	RGCGCY	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	144
BisI	GCNGC	4 cut(s)	194, 235, 402, 819
BlsI	GCNGC	4 cut(s)	195, 236, 403, 820
Bme1390I	CCNGG	3 cut(s)	212, 499, 897
Bme18I	GGWCC	2 cut(s)	319, 953
BmeT110I	CYCGRG	2 cut(s)	455, 956
BmgT120I	GGNCC	2 cut(s)	319, 953
BmiI	GGNNCC	5 cut(s)	19, 238, 320, 954, 955
BmrFI	CCNGG	3 cut(s)	212, 499, 897
BmsI	GCATC	3 cut(s)	180, 414, 752
BoxI	GACNNNNGTC	1 cut(s)	145
BpmI	CTGGAG	3 cut(s)	263, 277, 780
Bpu14I	TTCGAA	1 cut(s)	944
BpuMI	CCSGG	1 cut(s)	499
BsaI	GGTCTC	2 cut(s)	472, 886
BsaJI	CCNNGG	4 cut(s)	232, 454, 887, 896
BsaWI	WCCGGW	3 cut(s)	529, 553, 642
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 515, 809
Bse118I	RCCGGY	1 cut(s)	553
Bse1I	ACTGG	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	212, 897
BseDI	CCNNGG	4 cut(s)	232, 454, 887, 896
BseGI	GGATG	3 cut(s)	180, 195, 639
BseLI	CCNNNNNNNGG	3 cut(s)	315, 515, 809
BseMII	CTCAG	3 cut(s)	73, 405, 954
BseNI	ACTGG	1 cut(s)	21
BseRI	GAGGAG	3 cut(s)	576, 828, 904
BseXI	GCAGC	2 cut(s)	388, 830
Bsh1236I	CGCG	3 cut(s)	146, 234, 422
BshFI	GGCC	1 cut(s)	802
BshTI	ACCGGT	1 cut(s)	553
BsiHKAI	GWGCWC	2 cut(s)	252, 258
BsiHKCI	CYCGRG	2 cut(s)	455, 956
BsiSI	CCGG	5 cut(s)	184, 498, 530, 554, 643
BslFI	GGGAC	3 cut(s)	532, 939, 990
BslI	CCNNNNNNNGG	3 cut(s)	315, 515, 809
BsmAI	GTCTC	7 cut(s)	209, 290, 472, 630, 886, 905, 953
BsmBI	CGTCTC	1 cut(s)	290
BsmFI	GGGAC	3 cut(s)	532, 939, 990
BsnI	GGCC	1 cut(s)	802
Bso31I	GGTCTC	2 cut(s)	472, 886
BsoBI	CYCGRG	2 cut(s)	455, 956
Bsp119I	TTCGAA	1 cut(s)	944
Bsp1286I	GDGCHC	2 cut(s)	252, 258
Bsp143I	GATC	6 cut(s)	17, 202, 274, 459, 777, 881
BspANI	GGCC	1 cut(s)	802
BspCNI	CTCAG	3 cut(s)	72, 404, 955
BspFNI	CGCG	3 cut(s)	146, 234, 422
BspLI	GGNNCC	5 cut(s)	19, 238, 320, 954, 955
BspMI	ACCTGC	1 cut(s)	144
BspPI	GGATC	5 cut(s)	12, 25, 197, 467, 889
BspT104I	TTCGAA	1 cut(s)	944
BspTNI	GGTCTC	2 cut(s)	472, 886
BsrFI	RCCGGY	1 cut(s)	553
BsrI	ACTGG	1 cut(s)	21
BssAI	RCCGGY	1 cut(s)	553
BssECI	CCNNGG	4 cut(s)	232, 454, 887, 896
BssMI	GATC	6 cut(s)	17, 202, 274, 459, 777, 881
BssSI	CACGAG	2 cut(s)	251, 593
Bst2BI	CACGAG	2 cut(s)	251, 593
Bst2UI	CCWGG	2 cut(s)	212, 897
Bst4CI	ACNGT	6 cut(s)	45, 672, 679, 736, 871, 981
BstBI	TTCGAA	1 cut(s)	944
BstC8I	GCNNGC	2 cut(s)	406, 578
BstDEI	CTNAG	6 cut(s)	28, 59, 391, 727, 963, 1002
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	180, 195, 639
BstFNI	CGCG	3 cut(s)	146, 234, 422
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	6 cut(s)	20, 205, 277, 462, 780, 884
BstMAI	GTCTC	7 cut(s)	209, 290, 472, 630, 886, 905, 953
BstMBI	GATC	6 cut(s)	17, 202, 274, 459, 777, 881
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 815
BstNI	CCWGG	2 cut(s)	212, 897
BstNSI	RCATGY	1 cut(s)	634
BstPAI	GACNNNNGTC	1 cut(s)	145
BstSCI	CCNGG	3 cut(s)	210, 497, 895
BstSFI	CTRYAG	4 cut(s)	477, 678, 906, 995
BstUI	CGCG	3 cut(s)	146, 234, 422
BstV1I	GCAGC	2 cut(s)	388, 830
BstX2I	RGATCY	2 cut(s)	17, 881
BstYI	RGATCY	2 cut(s)	17, 881
BsuRI	GGCC	1 cut(s)	802
BtgI	CCRYGG	1 cut(s)	232
BtgZI	GCGATG	1 cut(s)	437
BtsCI	GGATG	3 cut(s)	180, 195, 639
BtsIMutI	CAGTG	2 cut(s)	41, 732
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	406, 578
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	319, 953
Cfr42I	CCGCGG	1 cut(s)	235
CseI	GACGC	2 cut(s)	135, 272
Csp6I	GTAC	2 cut(s)	199, 383
CspAI	ACCGGT	1 cut(s)	553
CspCI	CAANNNNNGTGG	2 cut(s)	30, 65
CviAII	CATG	2 cut(s)	315, 631
CviQI	GTAC	2 cut(s)	199, 383
DdeI	CTNAG	6 cut(s)	28, 59, 391, 727, 963, 1002
DpnI	GATC	6 cut(s)	19, 204, 276, 461, 779, 883
DpnII	GATC	6 cut(s)	17, 202, 274, 459, 777, 881
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	800
EciI	GGCGGA	2 cut(s)	202, 495
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	2 cut(s)	472, 886
Eco47I	GGWCC	2 cut(s)	319, 953
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	598
Eco88I	CYCGRG	2 cut(s)	455, 956
EcoICRI	GAGCTC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	953
EcoRI	GAATTC	1 cut(s)	940
EcoRII	CCWGG	2 cut(s)	210, 895
EcoT38I	GRGCYC	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	290
FaeI	CATG	2 cut(s)	318, 634
FaqI	GGGAC	3 cut(s)	532, 939, 990
FatI	CATG	2 cut(s)	314, 630
FauI	CCCGC	3 cut(s)	151, 427, 802
Fnu4HI	GCNGC	4 cut(s)	194, 235, 402, 819
FokI	GGATG	3 cut(s)	167, 202, 626
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	4 cut(s)	194, 235, 402, 819
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	4 cut(s)	194, 235, 402, 819
GsuI	CTGGAG	3 cut(s)	263, 277, 780
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	802
HapII	CCGG	5 cut(s)	184, 498, 530, 554, 643
HgaI	GACGC	2 cut(s)	135, 272
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	318, 634
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	5 cut(s)	184, 498, 530, 554, 643
HphI	GGTGA	2 cut(s)	568, 655
Hpy166II	GTNNAC	5 cut(s)	525, 663, 675, 739, 853
Hpy188I	TCNGA	5 cut(s)	107, 151, 394, 790, 888
Hpy188III	TCNNGA	5 cut(s)	373, 457, 469, 595, 956
Hpy8I	GTNNAC	5 cut(s)	525, 663, 675, 739, 853
Hpy99I	CGWCG	2 cut(s)	475, 826
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	6 cut(s)	45, 672, 679, 736, 871, 981
HpyCH4IV	ACGT	3 cut(s)	330, 348, 521
HpyCH4V	TGCA	2 cut(s)	344, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 815
HpyF3I	CTNAG	6 cut(s)	28, 59, 391, 727, 963, 1002
HpySE526I	ACGT	3 cut(s)	330, 348, 521
Hsp92II	CATG	2 cut(s)	318, 634
HspAI	GCGC	1 cut(s)	161
KflI	GGGWCCC	1 cut(s)	953
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	6 cut(s)	17, 202, 274, 459, 777, 881
LmnI	GCTCC	3 cut(s)	242, 540, 815
Lsp1109I	GCAGC	2 cut(s)	388, 830
LweI	GCATC	3 cut(s)	180, 414, 752
MaeII	ACGT	3 cut(s)	330, 348, 521
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	6 cut(s)	19, 204, 276, 461, 779, 883
MboI	GATC	6 cut(s)	17, 202, 274, 459, 777, 881
MboII	GAAGA	4 cut(s)	16, 47, 73, 977
MflI	RGATCY	2 cut(s)	17, 881
MhlI	GDGCHC	2 cut(s)	252, 258
MluCI	AATT	4 cut(s)	601, 856, 940, 1015
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	2 cut(s)	76, 753
MspA1I	CMGCKG	2 cut(s)	234, 809
MspI	CCGG	5 cut(s)	184, 498, 530, 554, 643
MspR9I	CCNGG	3 cut(s)	212, 499, 897
MvaI	CCWGG	2 cut(s)	212, 897
MvnI	CGCG	3 cut(s)	146, 234, 422
MwoI	GCNNNNNNNGC	2 cut(s)	193, 815
NciI	CCSGG	1 cut(s)	499
NdeII	GATC	6 cut(s)	17, 202, 274, 459, 777, 881
NlaIII	CATG	2 cut(s)	318, 634
NlaIV	GGNNCC	5 cut(s)	19, 238, 320, 954, 955
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	634
NspV	TTCGAA	1 cut(s)	944
PcsI	WCGNNNNNNNCGW	1 cut(s)	786
PinAI	ACCGGT	1 cut(s)	553
PkrI	GCNGC	4 cut(s)	195, 236, 403, 820
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PpuMI	RGGWCCY	1 cut(s)	953
PshAI	GACNNNNGTC	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	953
Psp6I	CCWGG	2 cut(s)	210, 895
PspGI	CCWGG	2 cut(s)	210, 895
PspN4I	GGNNCC	5 cut(s)	19, 238, 320, 954, 955
PspPI	GGNCC	2 cut(s)	319, 953
PspPPI	RGGWCCY	1 cut(s)	953
PsuI	RGATCY	2 cut(s)	17, 881
RsaI	GTAC	2 cut(s)	200, 384
RsaNI	GTAC	2 cut(s)	199, 383
SacI	GAGCTC	1 cut(s)	252
SacII	CCGCGG	1 cut(s)	235
SatI	GCNGC	4 cut(s)	194, 235, 402, 819
Sau3AI	GATC	6 cut(s)	17, 202, 274, 459, 777, 881
Sau96I	GGNCC	2 cut(s)	319, 953
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	3 cut(s)	212, 499, 897
SduI	GDGCHC	2 cut(s)	252, 258
SfaNI	GCATC	3 cut(s)	180, 414, 752
SfcI	CTRYAG	4 cut(s)	477, 678, 906, 995
Sfr303I	CCGCGG	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	944
SgrAI	CRCCGGYG	1 cut(s)	553
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	2 cut(s)	319, 953
Sse9I	AATT	4 cut(s)	601, 856, 940, 1015
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	3 cut(s)	210, 497, 895
TaaI	ACNGT	6 cut(s)	45, 672, 679, 736, 871, 981
TaiI	ACGT	3 cut(s)	333, 351, 524
TaqI	TCGA	7 cut(s)	84, 246, 258, 470, 706, 933, 944
TasI	AATT	4 cut(s)	601, 856, 940, 1015
TauI	GCSGC	2 cut(s)	196, 237
TscAI	CASTG	2 cut(s)	48, 739
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	2 cut(s)	401, 818
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	2 cut(s)	17, 55
TspGWI	ACGGA	2 cut(s)	190, 705
TspRI	CASTG	2 cut(s)	48, 739
VpaK11BI	GGWCC	2 cut(s)	319, 953
XapI	RAATTY	1 cut(s)	940
XceI	RCATGY	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.