Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006449

Physical Location & Seq

Genomic Coordinates Forward (+)

6751765 .. 6752970

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g06760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCTAAATCCAGTTCATCAACGGGTAGAGGATCTTATATGATTTCCATGGTACTTGTACTAGGGCAACTGATGGCTACCTTTGAAACTACAGGTGCCCAAATTGGTGTATGTAATGGAATGATTGGCGATGACCTACCAACCCAAGCAGAAGTTATTGCTCTCTACAAAACATATAAAATCCAGAGAATGAGACTCTATGATCCAAACCAAGCTGCTTTGGGTGCCCTTAGAGGCTCTAATATTGAGCTCTTGCTAGGCGTGCCAAATGACAACCTTCAAAACCTTGCTTCAAGCCAAGCCAATGCAAACACATGGGTGCAAAGCAATGTGAGAAACTTTGCCAATGTAAGATTCAAATACATTGCGGTAGGAAATGAAGTAAAGCCCTCAGACTCCTTTGCCCGATTTCTGGTCCCAGCAATGCGAAATATTGAAAAGGCGATTTCTCTTGCTGGCCTTGCCAAACAAATTAAAATCTCCACTGCCATAGACACTGGAGTACTTGGAGAAGCCTATCCTCCGTCAAATGGCTCATTCAAGCCTGAATATAGCTCACTTTTGCAACCCATTGTCCGTTTCCTAGTGAATCACAAATCGCCATTACTTGTTAACTTGTACCCGTATTTTAGTTACAGCAGCAACGCTCGTGATATTCGTCTTGATTATGCTCTTTTCATAGCTCCATCAATTGTGGTACAAGATGGAAAATTTGGTTATAATAATCTTTTTGATGCCATTTTGGATGGTGTTTATGCTGCCCTTGAGAAGGTTGGAGGAGGGTCCTTGGAAATTGTTGTATCAGAGACGGGTTGGCCATCAGCTGGTGGAACAGAAACTACAATTGATAATGCAAACACATATTACTCACACTTGATTCAACATGTGAAGGGAGGGACTCCAAGAAGGCCAGGAAAACCCATAGAAACTTATATCTTTGCCATGTTTGATGAGAATCAAAAGACACCAGAACTTGAGAAACATTGGGGGGTTTTTTCTCCCAAAAAGCAGCCTAAATACCCAATTATTTTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

346

Amino Acids

37.84

Weight (kDa)

8.89

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57240 AT3G57270
malus_domestica	MD14G1078700.v1.1 MD14G1079900.v1.1 MD14G1080000.v1.1 MD14G1080100.v1.1
prunus_persica	Prupe.7G051700_v2.0.a1 Prupe.7G051800_v2.0.a1 Prupe.7G051900_v2.0.a1 Prupe.7G052000_v2.0.a1
pyrus_communis	pycom12g07070 pycom14g06760 pycom14g06890 pycom14g06920 pycom14g06930 pycom14g06950
rosa_chinensis	RchiOBHm_Chr7g0178171
rosa_laevigata	RLG00000005465
rosa_multiflora	Rmu_sc0007855.1_g000007
rosa_roxburghii	Rroxscaffold_3G00275110
rosa_rugosa	Rorug06G0413800
rosa_samantha	Rh7AG013500 Rh7BG013400 Rh7CG013300 Rh7DG013600
rosa_wichuraiana	Rw7G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	720
AccB1I	GGYRCC	2 cut(s)	95, 224
AccB7I	CCANNNNNTGG	1 cut(s)	824
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	2 cut(s)	40, 197
AcoI	YGGCCR	1 cut(s)	815
AcsI	RAATTY	1 cut(s)	710
AfaI	GTAC	5 cut(s)	54, 60, 504, 620, 699
AfiI	CCNNNNNNNGG	4 cut(s)	412, 530, 769, 824
AflIII	ACRYGT	1 cut(s)	883
AgsI	TTSAA	8 cut(s)	86, 281, 294, 358, 437, 541, 881, 1033
AjnI	CCWGG	1 cut(s)	910
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	5 cut(s)	215, 250, 555, 683, 824
AluI	AGCT	5 cut(s)	215, 250, 555, 683, 824
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	2 cut(s)	187, 800
AlwI	GGATC	2 cut(s)	40, 197
AoxI	GGCC	3 cut(s)	457, 815, 908
ApeKI	GCWGC	4 cut(s)	215, 639, 758, 1009
ApoI	RAATTY	1 cut(s)	710
AspS9I	GGNCC	2 cut(s)	415, 783
AvaII	GGWCC	2 cut(s)	415, 783
BaeGI	GKGCMC	2 cut(s)	100, 229
BalI	TGGCCA	1 cut(s)	817
BanI	GGYRCC	2 cut(s)	95, 224
BanII	GRGCYC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	202, 651, 745, 1021
BccI	CCATC	5 cut(s)	67, 694, 698, 740, 826
BciT130I	CCWGG	1 cut(s)	912
BcoDI	GTCTC	2 cut(s)	187, 800
BfaI	CTAG	3 cut(s)	62, 257, 584
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	4 cut(s)	216, 640, 759, 1010
BlsI	GCNGC	4 cut(s)	217, 641, 760, 1011
BmcAI	AGTACT	1 cut(s)	504
Bme1390I	CCNGG	1 cut(s)	912
Bme18I	GGWCC	2 cut(s)	415, 783
BmgT120I	GGNCC	2 cut(s)	415, 783
BmiI	GGNNCC	4 cut(s)	97, 226, 417, 784
BmrFI	CCNGG	1 cut(s)	912
BmsI	GCATC	1 cut(s)	724
BpmI	CTGGAG	1 cut(s)	519
BpuEI	CTTGAG	2 cut(s)	785, 995
BsaBI	GATNNNNATC	1 cut(s)	954
BsaJI	CCNNGG	2 cut(s)	48, 786
Bsc4I	CCNNNNNNNGG	4 cut(s)	412, 530, 769, 824
Bse1I	ACTGG	2 cut(s)	12, 502
Bse3DI	GCAATG	3 cut(s)	334, 363, 429
Bse8I	GATNNNNATC	1 cut(s)	954
BseBI	CCWGG	1 cut(s)	912
BseDI	CCNNGG	2 cut(s)	48, 786
BseGI	GGATG	1 cut(s)	751
BseJI	GATNNNNATC	1 cut(s)	954
BseLI	CCNNNNNNNGG	4 cut(s)	412, 530, 769, 824
BseMI	GCAATG	3 cut(s)	334, 363, 429
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	12, 502
BseRI	GAGGAG	1 cut(s)	792
BseSI	GKGCMC	2 cut(s)	100, 229
BseXI	GCAGC	4 cut(s)	202, 651, 745, 1021
BseYI	CCCAGC	1 cut(s)	418
BshFI	GGCC	3 cut(s)	459, 817, 910
BshNI	GGYRCC	2 cut(s)	95, 224
BsiHKAI	GWGCWC	1 cut(s)	252
BslFI	GGGAC	2 cut(s)	401, 910
BslI	CCNNNNNNNGG	4 cut(s)	412, 530, 769, 824
BsmAI	GTCTC	2 cut(s)	187, 800
BsmBI	CGTCTC	1 cut(s)	800
BsmFI	GGGAC	2 cut(s)	401, 910
BsnI	GGCC	3 cut(s)	459, 817, 910
Bsp1286I	GDGCHC	3 cut(s)	100, 229, 252
Bsp143I	GATC	2 cut(s)	32, 202
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	3 cut(s)	459, 817, 910
BspCNI	CTCAG	1 cut(s)	404
BspLI	GGNNCC	4 cut(s)	97, 226, 417, 784
BspPI	GGATC	2 cut(s)	40, 197
BspT107I	GGYRCC	2 cut(s)	95, 224
BsrDI	GCAATG	3 cut(s)	334, 363, 429
BsrI	ACTGG	2 cut(s)	12, 502
BssECI	CCNNGG	2 cut(s)	48, 786
BssMI	GATC	2 cut(s)	32, 202
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	2 cut(s)	48, 786
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	912
BstC8I	GCNNGC	2 cut(s)	263, 457
BstDEI	CTNAG	2 cut(s)	230, 391
BstDSI	CCRYGG	1 cut(s)	48
BstENI	CCTNNNNNAGG	1 cut(s)	767
BstF5I	GGATG	1 cut(s)	751
BstKTI	GATC	2 cut(s)	35, 205
BstMAI	GTCTC	2 cut(s)	187, 800
BstMBI	GATC	2 cut(s)	32, 202
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 262, 461
BstNI	CCWGG	1 cut(s)	912
BstNSI	RCATGY	1 cut(s)	887
BstSCI	CCNGG	1 cut(s)	910
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	2 cut(s)	100, 229
BstV1I	GCAGC	4 cut(s)	202, 651, 745, 1021
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	3 cut(s)	459, 817, 910
BtgI	CCRYGG	1 cut(s)	48
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	751
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	483, 495
Cac8I	GCNNGC	2 cut(s)	263, 457
Cfr13I	GGNCC	2 cut(s)	415, 783
Csp6I	GTAC	5 cut(s)	53, 59, 503, 619, 698
CviAII	CATG	4 cut(s)	49, 315, 884, 943
CviQI	GTAC	5 cut(s)	53, 59, 503, 619, 698
DdeI	CTNAG	2 cut(s)	230, 391
DpnI	GATC	2 cut(s)	34, 204
DpnII	GATC	2 cut(s)	32, 202
EaeI	YGGCCR	1 cut(s)	815
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	2 cut(s)	48, 786
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	415, 783
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	767
EcoO109I	RGGNCCY	1 cut(s)	783
EcoRII	CCWGG	1 cut(s)	910
EcoT14I	CCWWGG	2 cut(s)	48, 786
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	2 cut(s)	48, 786
Esp3I	CGTCTC	1 cut(s)	800
FaeI	CATG	4 cut(s)	52, 318, 887, 946
FaqI	GGGAC	2 cut(s)	401, 910
FatI	CATG	4 cut(s)	48, 314, 883, 942
Fnu4HI	GCNGC	4 cut(s)	216, 640, 759, 1010
FokI	GGATG	1 cut(s)	758
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	4 cut(s)	216, 640, 759, 1010
FspBI	CTAG	3 cut(s)	62, 257, 584
GluI	GCNGC	4 cut(s)	216, 640, 759, 1010
GsaI	CCCAGC	1 cut(s)	422
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	3 cut(s)	459, 817, 910
Hin1II	CATG	4 cut(s)	52, 318, 887, 946
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	7 cut(s)	195, 354, 395, 589, 877, 898, 955
HpaI	GTTAAC	1 cut(s)	613
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	2 cut(s)	394, 805
Hpy188III	TCNNGA	3 cut(s)	184, 650, 662
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	4 cut(s)	287, 763, 883, 900
HpyCH4V	TGCA	4 cut(s)	308, 322, 565, 854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 262, 461
HpyF3I	CTNAG	2 cut(s)	230, 391
Hsp92II	CATG	4 cut(s)	52, 318, 887, 946
KspAI	GTTAAC	1 cut(s)	613
Kzo9I	GATC	2 cut(s)	32, 202
LmnI	GCTCC	1 cut(s)	688
Lsp1109I	GCAGC	4 cut(s)	202, 651, 745, 1021
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	3 cut(s)	62, 257, 584
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	2 cut(s)	34, 204
MboI	GATC	2 cut(s)	32, 202
MfeI	CAATTG	3 cut(s)	690, 843, 1033
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	3 cut(s)	100, 229, 252
MlsI	TGGCCA	1 cut(s)	817
MluCI	AATT	8 cut(s)	102, 471, 690, 710, 792, 843, 1023, 1033
MluNI	TGGCCA	1 cut(s)	817
MlyI	GAGTC	3 cut(s)	189, 389, 892
MmeI	TCCRAC	1 cut(s)	754
MnlI	CCTC	7 cut(s)	23, 227, 400, 531, 770, 773, 887
Mox20I	TGGCCA	1 cut(s)	817
MscI	TGGCCA	1 cut(s)	817
MseI	TTAA	2 cut(s)	474, 612
MslI	CAYNNNNRTG	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	817
MspA1I	CMGCKG	1 cut(s)	824
MspR9I	CCNGG	1 cut(s)	912
MunI	CAATTG	3 cut(s)	690, 843, 1033
MvaI	CCWGG	1 cut(s)	912
MwoI	GCNNNNNNNGC	3 cut(s)	224, 262, 461
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	32, 202
NlaIII	CATG	4 cut(s)	52, 318, 887, 946
NlaIV	GGNNCC	4 cut(s)	97, 226, 417, 784
NspI	RCATGY	1 cut(s)	887
OliI	CACNNNNGTG	1 cut(s)	317
PciI	ACATGT	1 cut(s)	883
PcsI	WCGNNNNNNNCGW	1 cut(s)	655
PfeI	GAWTC	4 cut(s)	354, 589, 877, 955
PflMI	CCANNNNNTGG	1 cut(s)	824
PkrI	GCNGC	4 cut(s)	217, 641, 760, 1011
PleI	GAGTC	3 cut(s)	189, 389, 892
PpsI	GAGTC	3 cut(s)	189, 389, 892
PpuMI	RGGWCCY	1 cut(s)	783
PscI	ACATGT	1 cut(s)	883
PsiI	TTATAA	1 cut(s)	720
Psp124BI	GAGCTC	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	783
Psp6I	CCWGG	1 cut(s)	910
PspFI	CCCAGC	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	910
PspN4I	GGNNCC	4 cut(s)	97, 226, 417, 784
PspPI	GGNCC	2 cut(s)	415, 783
PspPPI	RGGWCCY	1 cut(s)	783
PsrI	GAACNNNNNNTAC	2 cut(s)	823, 855
PsuI	RGATCY	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	5 cut(s)	54, 60, 504, 620, 699
RsaNI	GTAC	5 cut(s)	53, 59, 503, 619, 698
RseI	CAYNNNNRTG	1 cut(s)	317
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	474, 612
SatI	GCNGC	4 cut(s)	216, 640, 759, 1010
Sau3AI	GATC	2 cut(s)	32, 202
Sau96I	GGNCC	2 cut(s)	415, 783
ScaI	AGTACT	1 cut(s)	504
SchI	GAGTC	3 cut(s)	189, 389, 892
ScrFI	CCNGG	1 cut(s)	912
SduI	GDGCHC	3 cut(s)	100, 229, 252
SfaNI	GCATC	1 cut(s)	724
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	2 cut(s)	415, 783
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	764, 974
SmoI	CTYRAG	2 cut(s)	764, 974
Sse9I	AATT	8 cut(s)	102, 471, 690, 710, 792, 843, 1023, 1033
SsiI	CCGC	1 cut(s)	368
SspI	AATATT	2 cut(s)	244, 433
SspMI	CTAG	3 cut(s)	62, 257, 584
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	910
StyI	CCWWGG	2 cut(s)	48, 786
TasI	AATT	8 cut(s)	102, 471, 690, 710, 792, 843, 1023, 1033
TatI	WGTACW	2 cut(s)	58, 502
TfiI	GAWTC	4 cut(s)	354, 589, 877, 955
Tru1I	TTAA	2 cut(s)	474, 612
Tru9I	TTAA	2 cut(s)	474, 612
TscAI	CASTG	2 cut(s)	490, 502
TseI	GCWGC	4 cut(s)	215, 639, 758, 1009
TspDTI	ATGAA	3 cut(s)	6, 393, 667
TspGWI	ACGGA	2 cut(s)	513, 566
TspRI	CASTG	2 cut(s)	490, 502
Van91I	CCANNNNNTGG	1 cut(s)	824
VpaK11BI	GGWCC	2 cut(s)	415, 783
XagI	CCTNNNNNAGG	1 cut(s)	767
XapI	RAATTY	1 cut(s)	710
XceI	RCATGY	1 cut(s)	887
XspI	CTAG	3 cut(s)	62, 257, 584
ZrmI	AGTACT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.