Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007855.1

Orthogroup ID

OG0006449

Physical Location & Seq

Genomic Coordinates Forward (+)

42708 .. 44104

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007855.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgtctaaatgtaattcttcagttggcaaaaccccttctctgatctccatcgtgtttctacttgggcagctcatgatgataaccctacaaacagcagatgcccaaattggtgtatgctatggaatgcttggcaacttaccacctcaaagagatgttgttgctctttacaaacaatacaacattcgaaggatgcgactctatgatccaaaccaagccgctctcgctgccctgaggggctctaacatcgagctcattctcggcgtcccaaacgacaaccttcaaaccattgcctcaagccaggccaatgcaaactcatgggttcaaaacaatgtccgaaactacggcgatgtaagattcaagtacattgctgtcggaaacgaagtccagccaggagaatcatctgcacagtttctagtcccggccatgcgaaacattcaaaccgcaatttccaatgctggtcttggaaaccaaatcaaagtttccacagccatcgacaccagaggactcggagtatcgtaccctccctcaaaaggttctttcaagtctgaaaatagagcgctgctcgatcccattatacgcttcttagtggagaatagatctccattgctggttaacctgtacccgtattttagttacaaggacaacaccggtgccattcgtctcgattatgctctcttcacagctccatcggttgttgtacaagatggccaacttggttatcgtaatcttttcgatgccatattggacgctgtgtattctgctcttgagaaggccggtggagggtctttggaaattgttgtatcggagagcggctggccaacggccggtggaacagcaactactgttgacaatgcaaggacttacaactcaaacttgattcaacatgtcaagggtgggactccgaaaaagcccgggaggccgatagaaacttacatatttgccatgttcgatgaggatgggaaaaagccaccagagcttgagaaacattgggggctgttttccccgaacaaacaaccaaaataccctatcaatttcaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

346

Amino Acids

37.83

Weight (kDa)

9.12

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57240 AT3G57270
malus_domestica	MD14G1078700.v1.1 MD14G1079900.v1.1 MD14G1080000.v1.1 MD14G1080100.v1.1
prunus_persica	Prupe.7G051700_v2.0.a1 Prupe.7G051800_v2.0.a1 Prupe.7G051900_v2.0.a1 Prupe.7G052000_v2.0.a1
pyrus_communis	pycom12g07070 pycom14g06760 pycom14g06890 pycom14g06920 pycom14g06930 pycom14g06950
rosa_chinensis	RchiOBHm_Chr7g0178171
rosa_laevigata	RLG00000005465
rosa_multiflora	Rmu_sc0007855.1_g000007
rosa_roxburghii	Rroxscaffold_3G00275110
rosa_rugosa	Rorug06G0413800
rosa_samantha	Rh7AG013500 Rh7BG013400 Rh7CG013300 Rh7DG013600
rosa_wichuraiana	Rw7G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	650
AccBSI	CCGCTC	2 cut(s)	218, 810
AciI	CCGC	3 cut(s)	216, 441, 810
AclWI	GGATC	2 cut(s)	197, 560
AcoI	YGGCCR	4 cut(s)	420, 706, 815, 822
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	4 cut(s)	362, 518, 620, 699
AfeI	AGCGCT	1 cut(s)	558
AfiI	CCNNNNNNNGG	3 cut(s)	530, 780, 824
AflIII	ACRYGT	1 cut(s)	883
AgeI	ACCGGT	1 cut(s)	647
AgsI	TTSAA	7 cut(s)	281, 323, 358, 437, 541, 881, 1036
AjnI	CCWGG	2 cut(s)	297, 388
AluBI	AGCT	4 cut(s)	70, 250, 683, 976
AluI	AGCT	4 cut(s)	70, 250, 683, 976
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	2 cut(s)	197, 560
Ama87I	CYCGRG	1 cut(s)	911
Aor51HI	AGCGCT	1 cut(s)	558
AoxI	GGCC	7 cut(s)	300, 420, 706, 771, 815, 822, 917
ApeKI	GCWGC	3 cut(s)	67, 224, 559
AsiGI	ACCGGT	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	559
AsuC2I	CCSGG	3 cut(s)	419, 912, 913
AsuII	TTCGAA	1 cut(s)	184
AvaI	CYCGRG	1 cut(s)	911
AxyI	CCTNAGG	1 cut(s)	230
BalI	TGGCCA	2 cut(s)	708, 817
BanI	GGYRCC	1 cut(s)	650
BanII	GRGCYC	2 cut(s)	239, 252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	79, 211, 546
BccI	CCATC	5 cut(s)	56, 497, 694, 698, 950
BceAI	ACGGC	2 cut(s)	358, 837
BciT130I	CCWGG	2 cut(s)	299, 390
BcnI	CCSGG	3 cut(s)	419, 912, 913
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	1 cut(s)	413
BfoI	RGCGCY	1 cut(s)	560
BglI	GCCNNNNNGGC	1 cut(s)	916
BglII	AGATCT	1 cut(s)	596
BisI	GCNGC	5 cut(s)	68, 216, 225, 560, 811
BlsI	GCNGC	5 cut(s)	69, 217, 226, 561, 812
Bme1390I	CCNGG	5 cut(s)	299, 390, 419, 912, 913
BmeT110I	CYCGRG	1 cut(s)	911
BmiI	GGNNCC	1 cut(s)	652
BmrFI	CCNGG	5 cut(s)	299, 390, 419, 912, 913
BmsI	GCATC	3 cut(s)	88, 180, 724
BplI	GAGNNNNNCTC	2 cut(s)	546, 578
Bpu14I	TTCGAA	1 cut(s)	184
BpuEI	CTTGAG	3 cut(s)	277, 785, 998
BpuMI	CCSGG	3 cut(s)	419, 912, 913
BsaBI	GATNNNNATC	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	911
BsaWI	WCCGGW	1 cut(s)	647
Bsc4I	CCNNNNNNNGG	3 cut(s)	530, 780, 824
Bse118I	RCCGGY	3 cut(s)	647, 773, 824
Bse21I	CCTNAGG	1 cut(s)	230
Bse3DI	GCAATG	3 cut(s)	285, 363, 602
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	299, 390
BseDI	CCNNGG	1 cut(s)	911
BseGI	GGATG	2 cut(s)	195, 961
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	3 cut(s)	530, 780, 824
BseMI	GCAATG	3 cut(s)	285, 363, 602
BseMII	CTCAG	1 cut(s)	221
BseX3I	CGGCCG	1 cut(s)	822
BseXI	GCAGC	3 cut(s)	79, 211, 546
BsgI	GTGCAG	1 cut(s)	387
Bsh1285I	CGRYCG	1 cut(s)	825
BshFI	GGCC	7 cut(s)	302, 422, 708, 773, 817, 824, 919
BshNI	GGYRCC	1 cut(s)	650
BshTI	ACCGGT	1 cut(s)	647
BsiEI	CGRYCG	1 cut(s)	825
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	911
BsiSI	CCGG	5 cut(s)	419, 648, 774, 825, 912
BslFI	GGGAC	3 cut(s)	248, 401, 910
BslI	CCNNNNNNNGG	3 cut(s)	530, 780, 824
BsmAI	GTCTC	1 cut(s)	665
BsmBI	CGTCTC	1 cut(s)	665
BsmFI	GGGAC	3 cut(s)	248, 401, 910
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	7 cut(s)	302, 422, 708, 773, 817, 824, 919
BsoBI	CYCGRG	1 cut(s)	911
Bsp119I	TTCGAA	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	239, 252
Bsp1407I	TGTACA	1 cut(s)	697
Bsp143I	GATC	4 cut(s)	42, 202, 565, 596
BspACI	CCGC	3 cut(s)	216, 441, 810
BspANI	GGCC	7 cut(s)	302, 422, 708, 773, 817, 824, 919
BspCNI	CTCAG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	652
BspPI	GGATC	2 cut(s)	197, 560
BspT104I	TTCGAA	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	650
BsrBI	CCGCTC	2 cut(s)	218, 810
BsrDI	GCAATG	3 cut(s)	285, 363, 602
BsrFI	RCCGGY	3 cut(s)	647, 773, 824
BsrGI	TGTACA	1 cut(s)	697
BssAI	RCCGGY	3 cut(s)	647, 773, 824
BssECI	CCNNGG	1 cut(s)	911
BssMI	GATC	4 cut(s)	42, 202, 565, 596
BssNI	GRCGYC	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	299, 390
Bst4CI	ACNGT	2 cut(s)	408, 844
Bst6I	CTCTTC	1 cut(s)	680
BstACI	GRCGYC	1 cut(s)	261
BstAUI	TGTACA	1 cut(s)	697
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	815
BstDEI	CTNAG	2 cut(s)	230, 583
BstF5I	GGATG	2 cut(s)	195, 961
BstH2I	RGCGCY	1 cut(s)	560
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	4 cut(s)	45, 205, 568, 599
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	4 cut(s)	42, 202, 565, 596
BstMCI	CGRYCG	1 cut(s)	825
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 224, 916, 973
BstNI	CCWGG	2 cut(s)	299, 390
BstNSI	RCATGY	1 cut(s)	887
BstSCI	CCNGG	5 cut(s)	297, 388, 417, 910, 911
BstV1I	GCAGC	3 cut(s)	79, 211, 546
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BstZI	CGGCCG	1 cut(s)	822
Bsu36I	CCTNAGG	1 cut(s)	230
BsuRI	GGCC	7 cut(s)	302, 422, 708, 773, 817, 824, 919
BtgZI	GCGATG	1 cut(s)	360
BtsCI	GGATG	2 cut(s)	195, 961
Cac8I	GCNNGC	1 cut(s)	815
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	1 cut(s)	559
Cfr10I	RCCGGY	3 cut(s)	647, 773, 824
Cfr9I	CCCGGG	1 cut(s)	911
CseI	GACGC	2 cut(s)	250, 755
Csp6I	GTAC	4 cut(s)	361, 517, 619, 698
CspAI	ACCGGT	1 cut(s)	647
CviAII	CATG	5 cut(s)	73, 315, 424, 884, 943
CviQI	GTAC	4 cut(s)	361, 517, 619, 698
DdeI	CTNAG	2 cut(s)	230, 583
DpnI	GATC	4 cut(s)	44, 204, 567, 598
DpnII	GATC	4 cut(s)	42, 202, 565, 596
EaeI	YGGCCR	4 cut(s)	420, 706, 815, 822
EagI	CGGCCG	1 cut(s)	822
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Ecl136II	GAGCTC	1 cut(s)	250
EclXI	CGGCCG	1 cut(s)	822
Eco24I	GRGCYC	2 cut(s)	239, 252
Eco47III	AGCGCT	1 cut(s)	558
Eco52I	CGGCCG	1 cut(s)	822
Eco53kI	GAGCTC	1 cut(s)	250
Eco81I	CCTNAGG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	911
EcoICRI	GAGCTC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	297, 388
EcoT38I	GRGCYC	2 cut(s)	239, 252
Esp3I	CGTCTC	1 cut(s)	665
FaeI	CATG	5 cut(s)	76, 318, 427, 887, 946
FaqI	GGGAC	3 cut(s)	248, 401, 910
FatI	CATG	5 cut(s)	72, 314, 423, 883, 942
Fnu4HI	GCNGC	5 cut(s)	68, 216, 225, 560, 811
FokI	GGATG	2 cut(s)	202, 968
FriOI	GRGCYC	2 cut(s)	239, 252
Fsp4HI	GCNGC	5 cut(s)	68, 216, 225, 560, 811
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	5 cut(s)	68, 216, 225, 560, 811
HaeII	RGCGCY	1 cut(s)	560
HaeIII	GGCC	7 cut(s)	302, 422, 708, 773, 817, 824, 919
HapII	CCGG	5 cut(s)	419, 648, 774, 825, 912
HgaI	GACGC	2 cut(s)	250, 755
HhaI	GCGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	5 cut(s)	76, 318, 427, 887, 946
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	2 cut(s)	613, 847
HindII	GTYRAC	2 cut(s)	613, 847
HinfI	GANTC	6 cut(s)	195, 354, 395, 504, 877, 898
HpaI	GTTAAC	1 cut(s)	613
HpaII	CCGG	5 cut(s)	419, 648, 774, 825, 912
Hpy166II	GTNNAC	2 cut(s)	613, 847
Hpy188I	TCNGA	7 cut(s)	42, 335, 374, 509, 547, 805, 903
Hpy188III	TCNNGA	3 cut(s)	73, 662, 764
Hpy8I	GTNNAC	2 cut(s)	613, 847
HpyAV	CCTTC	4 cut(s)	45, 180, 287, 763
HpyCH4III	ACNGT	2 cut(s)	408, 844
HpyCH4V	TGCA	3 cut(s)	308, 404, 854
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 224, 916, 973
HpyF3I	CTNAG	2 cut(s)	230, 583
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	5 cut(s)	76, 318, 427, 887, 946
HspAI	GCGC	1 cut(s)	557
KspAI	GTTAAC	1 cut(s)	613
Kzo9I	GATC	4 cut(s)	42, 202, 565, 596
LmnI	GCTCC	1 cut(s)	688
Lsp1109I	GCAGC	3 cut(s)	79, 211, 546
LweI	GCATC	3 cut(s)	88, 180, 724
MaeI	CTAG	1 cut(s)	413
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	4 cut(s)	44, 204, 567, 598
MbiI	CCGCTC	2 cut(s)	218, 810
MboI	GATC	4 cut(s)	42, 202, 565, 596
MboII	GAAGA	2 cut(s)	9, 667
MfeI	CAATTG	1 cut(s)	1036
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	2 cut(s)	239, 252
MlsI	TGGCCA	2 cut(s)	708, 817
MluCI	AATT	6 cut(s)	13, 105, 444, 792, 1030, 1036
MluNI	TGGCCA	2 cut(s)	708, 817
MlyI	GAGTC	3 cut(s)	189, 498, 892
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	9 cut(s)	153, 225, 301, 494, 531, 535, 773, 909, 946
Mox20I	TGGCCA	2 cut(s)	708, 817
MscI	TGGCCA	2 cut(s)	708, 817
MseI	TTAA	1 cut(s)	612
Msp20I	TGGCCA	2 cut(s)	708, 817
MspI	CCGG	5 cut(s)	419, 648, 774, 825, 912
MspR9I	CCNGG	5 cut(s)	299, 390, 419, 912, 913
MunI	CAATTG	1 cut(s)	1036
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	2 cut(s)	299, 390
MwoI	GCNNNNNNNGC	4 cut(s)	221, 224, 916, 973
NciI	CCSGG	3 cut(s)	419, 912, 913
NdeII	GATC	4 cut(s)	42, 202, 565, 596
NlaIII	CATG	5 cut(s)	76, 318, 427, 887, 946
NlaIV	GGNNCC	1 cut(s)	652
NmeAIII	GCCGAG	1 cut(s)	237
NspI	RCATGY	1 cut(s)	887
NspV	TTCGAA	1 cut(s)	184
PagI	TCATGA	1 cut(s)	72
PciI	ACATGT	1 cut(s)	883
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	354, 395, 877
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	5 cut(s)	69, 217, 226, 561, 812
PleI	GAGTC	3 cut(s)	189, 498, 892
PpsI	GAGTC	3 cut(s)	189, 498, 892
PscI	ACATGT	1 cut(s)	883
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	297, 388
PspGI	CCWGG	2 cut(s)	297, 388
PspN4I	GGNNCC	1 cut(s)	652
PsrI	GAACNNNNNNTAC	2 cut(s)	823, 855
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	4 cut(s)	362, 518, 620, 699
RsaNI	GTAC	4 cut(s)	361, 517, 619, 698
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	5 cut(s)	68, 216, 225, 560, 811
Sau3AI	GATC	4 cut(s)	42, 202, 565, 596
SchI	GAGTC	3 cut(s)	189, 498, 892
ScrFI	CCNGG	5 cut(s)	299, 390, 419, 912, 913
SduI	GDGCHC	2 cut(s)	239, 252
SetI	ASST	8 cut(s)	72, 145, 252, 279, 535, 618, 685, 978
SfaNI	GCATC	3 cut(s)	88, 180, 724
SfuI	TTCGAA	1 cut(s)	184
SgrAI	CRCCGGYG	1 cut(s)	647
SmaI	CCCGGG	1 cut(s)	913
SmlI	CTYRAG	3 cut(s)	292, 764, 977
SmoI	CTYRAG	3 cut(s)	292, 764, 977
Sse9I	AATT	6 cut(s)	13, 105, 444, 792, 1030, 1036
SsiI	CCGC	3 cut(s)	216, 441, 810
SspMI	CTAG	1 cut(s)	413
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	5 cut(s)	297, 388, 417, 910, 911
TaaI	ACNGT	2 cut(s)	408, 844
TaqI	TCGA	7 cut(s)	184, 246, 492, 564, 663, 732, 948
TasI	AATT	6 cut(s)	13, 105, 444, 792, 1030, 1036
TatI	WGTACW	2 cut(s)	360, 697
TauI	GCSGC	2 cut(s)	218, 813
TfiI	GAWTC	3 cut(s)	354, 395, 877
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TseI	GCWGC	3 cut(s)	67, 224, 559
TspMI	CCCGGG	1 cut(s)	911
XceI	RCATGY	1 cut(s)	887
XmaI	CCCGGG	1 cut(s)	911
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.