Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006449

Physical Location & Seq

Genomic Coordinates Forward (+)

7373842 .. 7375810

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCTAAATCCAATTCTTCGGTTGGCAGAGGCTCTTCTGTCATTTCGATGATACTTCTACTTGGGCAACTGATGGCTAGCTTTCAAACAACAGGTGCTCAAATTGGTGTATGTTATGGAATGCTTGGCGACGACCTACCATCCCAAGCAGAAGTTATTACTCTCTTCAACCAAAATAATATCCATAGAATGAGACTATATAATCCAAATCCAGCCGCTCTGGAGGCCCTTAGAGGCTCTAACATTGAGCTCATGTTAGGCATACCGGATGAAAACCTTCAAAACCTTGCCACAAGCCAAGATAATGCAAATACATGGGTTCAAAACAACGTGAGAAAGTATGACAATGTAAAATTCAAATATCTTGCGGTAGGAAATGAAATCAAGCTCTCGGACTCATTAGCACAATTTCTTGTCCCGGCAATGCGAAACATTCAAAATGCAATTTCTAGTGCTAGTCTTGGAAACCAAATCAAAGTTTCCACTGCTTTTGACACTACAGTACTTGGAGTGTCCTTTCCTCCATCAAAAGGCGTATTCAAGTCCGAATATAGAGCAGTTTTGGATCCCCTCATTGCTTTCCTCGTGGACAACTACTCTCCGCTACTCCTTAACATGTACCCTTATTTTGCTTACAGTGGCAGCAGTGGTGACGTTCGTCTTGATTATGCTCTTTTCACAGCTCCCTCAGTTGTAGTACAAGATGACAACCTCGGTTACAATAATCTTTTCGATGCAATTTTGGATAGTGCTTATGCAGCTCTTGAGAGGGCGGGTGCAGGGTCTTTGGCAATTGTTGTATCGGAGACTGGCTGGCCATCAGCTGGTGCAAATTCAACAACAATTGATAATGCAAGGACTTATAACTCAAATTTGATTAAACATGTGAAGAAAGGGACGCCGAGGAAGCCTGGAAAGCCCATAGAAACTTACATTTTCGCCATGTTTGATGAGAATAGAAAGACCCCAGAGCTTGAAAAACATTGGGGGCTGTTTTCCCCAAACAAACAGCCTAAATACCCAATTGATTTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

346

Amino Acids

37.77

Weight (kDa)

6.33

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57240 AT3G57270
malus_domestica	MD14G1078700.v1.1 MD14G1079900.v1.1 MD14G1080000.v1.1 MD14G1080100.v1.1
prunus_persica	Prupe.7G051700_v2.0.a1 Prupe.7G051800_v2.0.a1 Prupe.7G051900_v2.0.a1 Prupe.7G052000_v2.0.a1
pyrus_communis	pycom12g07070 pycom14g06760 pycom14g06890 pycom14g06920 pycom14g06930 pycom14g06950
rosa_chinensis	RchiOBHm_Chr7g0178171
rosa_laevigata	RLG00000005465
rosa_multiflora	Rmu_sc0007855.1_g000007
rosa_roxburghii	Rroxscaffold_3G00275110
rosa_rugosa	Rorug06G0413800
rosa_samantha	Rh7AG013500 Rh7BG013400 Rh7CG013300 Rh7DG013600
rosa_wichuraiana	Rw7G001070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	864
AccB7I	CCANNNNNTGG	1 cut(s)	824
AccBSI	CCGCTC	1 cut(s)	218
AciI	CCGC	4 cut(s)	216, 368, 602, 773
AclWI	GGATC	2 cut(s)	560, 573
AcoI	YGGCCR	1 cut(s)	815
AcsI	RAATTY	3 cut(s)	353, 832, 871
AcyI	GRCGYC	1 cut(s)	899
AfaI	GTAC	3 cut(s)	504, 620, 699
AfiI	CCNNNNNNNGG	2 cut(s)	530, 824
AflIII	ACRYGT	2 cut(s)	615, 883
AjnI	CCWGG	1 cut(s)	910
AluBI	AGCT	7 cut(s)	81, 250, 388, 683, 761, 824, 973
AluI	AGCT	7 cut(s)	81, 250, 388, 683, 761, 824, 973
Alw21I	GWGCWC	2 cut(s)	100, 252
Alw26I	GTCTC	2 cut(s)	187, 800
AlwI	GGATC	2 cut(s)	560, 573
AoxI	GGCC	2 cut(s)	225, 815
ApeKI	GCWGC	2 cut(s)	642, 758
ApoI	RAATTY	3 cut(s)	353, 832, 871
Asp700I	GAANNNNTTC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	226
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	662
AsuNHI	GCTAGC	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	817
BamHI	GGATCC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	584
Bbv12I	GWGCWC	2 cut(s)	100, 252
BbvI	GCAGC	2 cut(s)	654, 770
BccI	CCATC	4 cut(s)	67, 148, 532, 826
BciT130I	CCWGG	1 cut(s)	912
BcnI	CCSGG	1 cut(s)	419
BcoDI	GTCTC	2 cut(s)	187, 800
BfaI	CTAG	3 cut(s)	78, 450, 456
BfmI	CTRYAG	1 cut(s)	498
BisI	GCNGC	3 cut(s)	216, 643, 759
BlsI	GCNGC	3 cut(s)	217, 644, 760
BmcAI	AGTACT	1 cut(s)	504
Bme1390I	CCNGG	2 cut(s)	419, 912
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	2 cut(s)	419, 912
BmsI	GCATC	1 cut(s)	724
BmtI	GCTAGC	1 cut(s)	81
BoxI	GACNNNNGTC	1 cut(s)	657
BpmI	CTGGAG	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	785
BpuMI	CCSGG	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	899
BsaJI	CCNNGG	2 cut(s)	712, 902
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	2 cut(s)	530, 824
Bse1I	ACTGG	1 cut(s)	814
Bse3DI	GCAATG	2 cut(s)	429, 573
BseBI	CCWGG	1 cut(s)	912
BseDI	CCNNGG	2 cut(s)	712, 902
BseGI	GGATG	2 cut(s)	140, 274
BseLI	CCNNNNNNNGG	2 cut(s)	530, 824
BseMI	GCAATG	2 cut(s)	429, 573
BseMII	CTCAG	1 cut(s)	702
BseNI	ACTGG	1 cut(s)	814
BseXI	GCAGC	2 cut(s)	654, 770
BsgI	GTGCAG	1 cut(s)	798
BshFI	GGCC	2 cut(s)	227, 817
BsiHKAI	GWGCWC	2 cut(s)	100, 252
BsiSI	CCGG	2 cut(s)	266, 419
BslFI	GGGAC	2 cut(s)	401, 910
BslI	CCNNNNNNNGG	2 cut(s)	530, 824
BsmAI	GTCTC	2 cut(s)	187, 800
BsmFI	GGGAC	2 cut(s)	401, 910
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	2 cut(s)	227, 817
Bsp1286I	GDGCHC	2 cut(s)	100, 252
Bsp143I	GATC	1 cut(s)	565
BspACI	CCGC	4 cut(s)	216, 368, 602, 773
BspANI	GGCC	2 cut(s)	227, 817
BspCNI	CTCAG	1 cut(s)	701
BspLI	GGNNCC	1 cut(s)	567
BspOI	GCTAGC	1 cut(s)	81
BspPI	GGATC	2 cut(s)	560, 573
BspQI	GCTCTTC	1 cut(s)	40
BsrBI	CCGCTC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	429, 573
BsrI	ACTGG	1 cut(s)	814
BssECI	CCNNGG	2 cut(s)	712, 902
BssMI	GATC	1 cut(s)	565
BssNI	GRCGYC	1 cut(s)	899
BssSI	CACGAG	1 cut(s)	584
Bst2BI	CACGAG	1 cut(s)	584
Bst2UI	CCWGG	1 cut(s)	912
Bst4CI	ACNGT	2 cut(s)	502, 638
Bst6I	CTCTTC	2 cut(s)	40, 170
BstACI	GRCGYC	1 cut(s)	899
BstC8I	GCNNGC	2 cut(s)	79, 815
BstDEI	CTNAG	2 cut(s)	230, 688
BstF5I	GGATG	2 cut(s)	140, 274
BstKTI	GATC	1 cut(s)	568
BstMAI	GTCTC	2 cut(s)	187, 800
BstMBI	GATC	1 cut(s)	565
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 758, 907, 916
BstNI	CCWGG	1 cut(s)	912
BstNSI	RCATGY	2 cut(s)	619, 887
BstPAI	GACNNNNGTC	1 cut(s)	657
BstSCI	CCNGG	2 cut(s)	417, 910
BstSFI	CTRYAG	1 cut(s)	498
BstV1I	GCAGC	2 cut(s)	654, 770
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	227, 817
BtsCI	GGATG	2 cut(s)	140, 274
BtsI	GCAGTG	2 cut(s)	483, 652
BtsIMutI	CAGTG	3 cut(s)	483, 643, 652
Cac8I	GCNNGC	2 cut(s)	79, 815
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	1 cut(s)	907
Csp6I	GTAC	3 cut(s)	503, 619, 698
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	5 cut(s)	253, 315, 616, 884, 943
CviQI	GTAC	3 cut(s)	503, 619, 698
DdeI	CTNAG	2 cut(s)	230, 688
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
EaeI	YGGCCR	1 cut(s)	815
Eam1104I	CTCTTC	2 cut(s)	40, 170
EarI	CTCTTC	2 cut(s)	40, 170
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	910
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	5 cut(s)	256, 318, 619, 887, 946
FaqI	GGGAC	2 cut(s)	401, 910
FatI	CATG	5 cut(s)	252, 314, 615, 883, 942
FauI	CCCGC	1 cut(s)	766
Fnu4HI	GCNGC	3 cut(s)	216, 643, 759
FokI	GGATG	2 cut(s)	127, 281
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	3 cut(s)	216, 643, 759
FspBI	CTAG	3 cut(s)	78, 450, 456
GluI	GCNGC	3 cut(s)	216, 643, 759
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	227, 817
HapII	CCGG	2 cut(s)	266, 419
HgaI	GACGC	1 cut(s)	907
Hin1I	GRCGYC	1 cut(s)	899
Hin1II	CATG	5 cut(s)	256, 318, 619, 887, 946
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	2 cut(s)	266, 419
HphI	GGTGA	1 cut(s)	662
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	3 cut(s)	394, 547, 805
Hpy188III	TCNNGA	3 cut(s)	221, 662, 764
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	2 cut(s)	502, 638
HpyCH4IV	ACGT	2 cut(s)	330, 654
HpyCH4V	TGCA	7 cut(s)	308, 443, 737, 758, 779, 830, 854
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 758, 907, 916
HpyF3I	CTNAG	2 cut(s)	230, 688
HpySE526I	ACGT	2 cut(s)	330, 654
Hsp92I	GRCGYC	1 cut(s)	899
Hsp92II	CATG	5 cut(s)	256, 318, 619, 887, 946
Kzo9I	GATC	1 cut(s)	565
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	688
Lsp1109I	GCAGC	2 cut(s)	654, 770
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	3 cut(s)	78, 450, 456
MaeII	ACGT	2 cut(s)	330, 654
MaeIII	GTNAC	2 cut(s)	650, 716
MalI	GATC	1 cut(s)	567
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	1 cut(s)	565
MboII	GAAGA	4 cut(s)	9, 27, 157, 901
MfeI	CAATTG	4 cut(s)	792, 843, 1023, 1033
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	2 cut(s)	100, 252
MlsI	TGGCCA	1 cut(s)	817
MluNI	TGGCCA	1 cut(s)	817
MlyI	GAGTC	1 cut(s)	389
Mox20I	TGGCCA	1 cut(s)	817
MroXI	GAANNNNTTC	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	817
MseI	TTAA	2 cut(s)	612, 879
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	817
MspA1I	CMGCKG	1 cut(s)	824
MspI	CCGG	2 cut(s)	266, 419
MspR9I	CCNGG	2 cut(s)	419, 912
MunI	CAATTG	4 cut(s)	792, 843, 1023, 1033
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	912
MwoI	GCNNNNNNNGC	4 cut(s)	224, 758, 907, 916
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	1 cut(s)	565
NheI	GCTAGC	1 cut(s)	77
NlaIII	CATG	5 cut(s)	256, 318, 619, 887, 946
NlaIV	GGNNCC	1 cut(s)	567
NmeAIII	GCCGAG	1 cut(s)	927
NmuCI	GTSAC	1 cut(s)	650
NspI	RCATGY	2 cut(s)	619, 887
PciI	ACATGT	2 cut(s)	615, 883
PciSI	GCTCTTC	1 cut(s)	40
PctI	GAATGC	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	276
PflMI	CCANNNNNTGG	1 cut(s)	824
PkrI	GCNGC	3 cut(s)	217, 644, 760
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PscI	ACATGT	2 cut(s)	615, 883
PshAI	GACNNNNGTC	1 cut(s)	657
PsiI	TTATAA	1 cut(s)	864
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	910
PspGI	CCWGG	1 cut(s)	910
PspN4I	GGNNCC	1 cut(s)	567
PspPI	GGNCC	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	3 cut(s)	504, 620, 699
RsaNI	GTAC	3 cut(s)	503, 619, 698
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	612, 879
SatI	GCNGC	3 cut(s)	216, 643, 759
Sau3AI	GATC	1 cut(s)	565
Sau96I	GGNCC	1 cut(s)	226
ScaI	AGTACT	1 cut(s)	504
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	419, 912
SduI	GDGCHC	2 cut(s)	100, 252
SfaNI	GCATC	1 cut(s)	724
SfcI	CTRYAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
SsiI	CCGC	4 cut(s)	216, 368, 602, 773
SspMI	CTAG	3 cut(s)	78, 450, 456
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	417, 910
TaaI	ACNGT	2 cut(s)	502, 638
TaiI	ACGT	2 cut(s)	333, 657
TaqI	TCGA	2 cut(s)	47, 732
TatI	WGTACW	2 cut(s)	502, 697
TauI	GCSGC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	612, 879
Tru9I	TTAA	2 cut(s)	612, 879
TscAI	CASTG	3 cut(s)	490, 643, 652
TseFI	GTSAC	1 cut(s)	650
TseI	GCWGC	2 cut(s)	642, 758
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	2 cut(s)	285, 393
TspRI	CASTG	3 cut(s)	490, 643, 652
Van91I	CCANNNNNTGG	1 cut(s)	824
XapI	RAATTY	3 cut(s)	353, 832, 871
XceI	RCATGY	2 cut(s)	619, 887
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	3 cut(s)	78, 450, 456
ZrmI	AGTACT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.