AT3G58630
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003314
Physical Location & Seq
Reverse (-)
21683516 .. 21686039
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58630.2

Sequence Viewer

Length: 966 bp
ATGGACACCGTCAACGATTCCTTTTCGCCGGGATCTTCCCGACCTTCGCCGGCGACGCTTTCTCGTGAAGATTGCTGGAGCGAGGAAGCGACCTTCACGCTCATCCAAGCCTGGGGTAATCGCTACGTCGACCTCAGCCGAGGTAATCTCCGTCAGAAACACTGGCAAGAGGTGGCTAACGCCGTTAACGACCGTCACTACAACACCGGTCGAAACGTTTCCGCCGCCAAATCGCAGCCGTATCGCACCGACGTTCAGTGTAAAAACCGGATCGATACTCTGAAGAAGAAGTACAAAGTCGAGAAGGCTAGGGTTTCGGAATCCAATCCCGGTGCCTACATCAGCCCTTGGCCTTTCTTCTCCGCTCTCGATGACCTTCTCCGGGAAAGCTTTCCGACGTCTAGTAATCCTGATTCAACTGATAACATCCCGCACCAGAGGCTATCACTTCCGATGTCCATTAATCCAGTTCCGGTCGCTCCACGATCGGCGATCCCCAGACGTCCGGCGACATCGCCGGCGATTATACCTCACGCCGGTGACGATTTACTCGGATTTCGCGGGAATCTCAACGCATTCGCGGCAGCCGCAGCGGCGGCGGCGTGTCCGGCGTCTGAAGATGACTCGGAAGGTTCAAGGTCTAGATCGAGCGGTCGTAGCGGGAGTAACAAGAAGCGGGAGAGGAAAATTGAGAAGAAGCAAGGCTACAAGGAAGTTGCCGACGCAATTGAGAGGCTTGGACAGATATACGAGAGAGTCGAGGAGAAGAAGAGGAAGGAAATGGTTGAATTGGAGAAGCAGAGAATGAGATTCGCTAAGGAATTGGAATGCCATAGGATGCAACTGTTCACGGAGATGCAGGTACGTCTTCATAAGCTCCGGCGTACCTCTGGCTCCAAAGGACCGACTTCCTCCGCCTCCGCCGCTCTTGATTATGGGATGATGGATTTCCCTAGTTACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

321

Amino Acids

36.05

Weight (kDa)

9.48

Isoelectric Point (pI)

60.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 24 - 126 9.2e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 401, 505
Acc36I ACCTGC 1 cut(s) 850
AccB1I GGYRCC 1 cut(s) 332
AccBSI CCGCTC 3 cut(s) 365, 651, 926
AccI GTMKAC 1 cut(s) 129
AccII CGCG 2 cut(s) 561, 581
AclI AACGTT 1 cut(s) 216
AclWI GGATC 3 cut(s) 40, 278, 487
AcuI CTGAAG 2 cut(s) 302, 636
AcyI GRCGYC 3 cut(s) 398, 502, 611
AfaI GTAC 3 cut(s) 293, 864, 886
AfiI CCNNNNNNNGG 3 cut(s) 112, 382, 536
AgeI ACCGGT 1 cut(s) 206
AgsI TTSAA 3 cut(s) 417, 636, 788
AjnI CCWGG 1 cut(s) 110
AleI CACNNNNGTG 1 cut(s) 537
AluBI AGCT 2 cut(s) 390, 877
AluI AGCT 2 cut(s) 390, 877
AlwI GGATC 3 cut(s) 40, 278, 487
AoxI GGCC 1 cut(s) 350
ApeKI GCWGC 3 cut(s) 235, 584, 590
AseI ATTAAT 1 cut(s) 462
AsiGI ACCGGT 1 cut(s) 206
Asp700I GAANNNNTTC 2 cut(s) 217, 390
AspS9I GGNCC 1 cut(s) 902
AsuC2I CCSGG 3 cut(s) 30, 330, 383
AsuHPI GGTGA 1 cut(s) 551
AvaII GGWCC 1 cut(s) 902
BanI GGYRCC 1 cut(s) 332
BarI GAAGNNNNNNTAC 4 cut(s) 275, 307, 689, 721
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 860
BbvCI CCTCAGC 1 cut(s) 134
BbvI GCAGC 3 cut(s) 247, 596, 602
BccI CCATC 1 cut(s) 937
BceAI ACGGC 2 cut(s) 167, 223
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 1 cut(s) 112
BcnI CCSGG 3 cut(s) 30, 330, 383
BfaI CTAG 5 cut(s) 309, 402, 642, 954, 964
BfuAI ACCTGC 1 cut(s) 850
BglI GCCNNNNNGGC 1 cut(s) 593
Bme1390I CCNGG 4 cut(s) 30, 112, 330, 383
Bme18I GGWCC 1 cut(s) 902
BmgT120I GGNCC 1 cut(s) 902
BmiI GGNNCC 2 cut(s) 334, 895
BmrFI CCNGG 4 cut(s) 30, 112, 330, 383
BmsI GCATC 2 cut(s) 828, 846
BpiI GAAGAC 1 cut(s) 860
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpmI CTGGAG 1 cut(s) 97
Bpu10I CCTNAGC 2 cut(s) 134, 816
BpuMI CCSGG 3 cut(s) 30, 330, 383
Bsa29I ATCGAT 1 cut(s) 273
BsaHI GRCGYC 3 cut(s) 398, 502, 611
BsaJI CCNNGG 3 cut(s) 111, 139, 347
BsaWI WCCGGW 3 cut(s) 206, 267, 472
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 382, 536
Bse118I RCCGGY 4 cut(s) 49, 206, 517, 536
Bse1I ACTGG 2 cut(s) 167, 467
BseBI CCWGG 1 cut(s) 112
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 3 cut(s) 111, 139, 347
BseGI GGATG 4 cut(s) 102, 426, 843, 945
BseLI CCNNNNNNNGG 3 cut(s) 112, 382, 536
BseMII CTCAG 1 cut(s) 148
BseNI ACTGG 2 cut(s) 167, 467
BseRI GAGGAG 1 cut(s) 776
BseXI GCAGC 3 cut(s) 247, 596, 602
Bsh1236I CGCG 2 cut(s) 561, 581
Bsh1285I CGRYCG 5 cut(s) 193, 211, 477, 488, 655
BshFI GGCC 1 cut(s) 352
BshNI GGYRCC 1 cut(s) 332
BshTI ACCGGT 1 cut(s) 206
BshVI ATCGAT 1 cut(s) 273
BsiEI CGRYCG 5 cut(s) 193, 211, 477, 488, 655
BslI CCNNNNNNNGG 3 cut(s) 112, 382, 536
BsmI GAATGC 2 cut(s) 575, 833
BsnI GGCC 1 cut(s) 352
Bsp143I GATC 5 cut(s) 32, 270, 485, 492, 644
BspANI GGCC 1 cut(s) 352
BspCNI CTCAG 1 cut(s) 147
BspDI ATCGAT 1 cut(s) 273
BspFNI CGCG 2 cut(s) 561, 581
BspLI GGNNCC 2 cut(s) 334, 895
BspMI ACCTGC 1 cut(s) 850
BspPI GGATC 3 cut(s) 40, 278, 487
BspT107I GGYRCC 1 cut(s) 332
BsrBI CCGCTC 3 cut(s) 365, 651, 926
BsrFI RCCGGY 4 cut(s) 49, 206, 517, 536
BsrI ACTGG 2 cut(s) 167, 467
BssAI RCCGGY 4 cut(s) 49, 206, 517, 536
BssECI CCNNGG 3 cut(s) 111, 139, 347
BssMI GATC 5 cut(s) 32, 270, 485, 492, 644
BssNI GRCGYC 3 cut(s) 398, 502, 611
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 347
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 3 cut(s) 10, 194, 846
Bst6I CTCTTC 1 cut(s) 764
BstACI GRCGYC 3 cut(s) 398, 502, 611
BstC8I GCNNGC 2 cut(s) 51, 519
BstDEI CTNAG 2 cut(s) 134, 816
BstF5I GGATG 4 cut(s) 102, 426, 843, 945
BstFNI CGCG 2 cut(s) 561, 581
BstKTI GATC 5 cut(s) 35, 273, 488, 495, 647
BstMBI GATC 5 cut(s) 32, 270, 485, 492, 644
BstMCI CGRYCG 5 cut(s) 193, 211, 477, 488, 655
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 4 cut(s) 28, 110, 328, 381
BstUI CGCG 2 cut(s) 561, 581
BstV1I GCAGC 3 cut(s) 247, 596, 602
BstV2I GAAGAC 1 cut(s) 860
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 1 cut(s) 352
BsuTUI ATCGAT 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 4 cut(s) 102, 426, 843, 945
BtsIMutI CAGTG 2 cut(s) 160, 263
BveI ACCTGC 1 cut(s) 850
Cac8I GCNNGC 2 cut(s) 51, 519
Cfr10I RCCGGY 4 cut(s) 49, 206, 517, 536
Cfr13I GGNCC 1 cut(s) 902
ClaI ATCGAT 1 cut(s) 273
CseI GACGC 3 cut(s) 64, 600, 731
Csp6I GTAC 3 cut(s) 292, 863, 885
CspAI ACCGGT 1 cut(s) 206
CviQI GTAC 3 cut(s) 292, 863, 885
DdeI CTNAG 2 cut(s) 134, 816
DpnI GATC 5 cut(s) 34, 272, 487, 494, 646
DpnII GATC 5 cut(s) 32, 270, 485, 492, 644
Eam1104I CTCTTC 1 cut(s) 764
EarI CTCTTC 1 cut(s) 764
EciI GGCGGA 3 cut(s) 211, 904, 910
Eco130I CCWWGG 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 902
Eco57I CTGAAG 2 cut(s) 302, 636
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 347
FaiI YATR 5 cut(s) 527, 748, 834, 873, 936
FauI CCCGC 4 cut(s) 438, 554, 653, 669
FblI GTMKAC 1 cut(s) 129
FokI GGATG 4 cut(s) 89, 413, 850, 952
FspBI CTAG 5 cut(s) 309, 402, 642, 954, 964
GsuI CTGGAG 1 cut(s) 97
HaeIII GGCC 1 cut(s) 352
HgaI GACGC 3 cut(s) 64, 600, 731
Hin1I GRCGYC 3 cut(s) 398, 502, 611
HincII GTYRAC 3 cut(s) 13, 130, 187
HindII GTYRAC 3 cut(s) 13, 130, 187
HindIII AAGCTT 1 cut(s) 388
HinfI GANTC 7 cut(s) 17, 320, 413, 565, 623, 756, 810
HpaI GTTAAC 1 cut(s) 187
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 4 cut(s) 13, 130, 187, 849
Hpy188I TCNGA 8 cut(s) 156, 282, 319, 396, 453, 554, 616, 628
Hpy188III TCNNGA 7 cut(s) 39, 65, 301, 368, 410, 642, 929
Hpy8I GTNNAC 4 cut(s) 13, 130, 187, 849
Hpy99I CGWCG 5 cut(s) 58, 131, 254, 400, 725
HpyAV CCTTC 6 cut(s) 54, 103, 298, 386, 623, 769
HpyCH4III ACNGT 3 cut(s) 10, 194, 846
HpyCH4IV ACGT 6 cut(s) 126, 216, 252, 398, 502, 865
HpyCH4V TGCA 2 cut(s) 841, 859
HpyF3I CTNAG 2 cut(s) 134, 816
HpySE526I ACGT 6 cut(s) 126, 216, 252, 398, 502, 865
Hsp92I GRCGYC 3 cut(s) 398, 502, 611
KroI GCCGGC 2 cut(s) 49, 517
KroNI GCCGGC 2 cut(s) 51, 519
KspAI GTTAAC 1 cut(s) 187
Kzo9I GATC 5 cut(s) 32, 270, 485, 492, 644
LmnI GCTCC 4 cut(s) 78, 484, 882, 899
Lsp1109I GCAGC 3 cut(s) 247, 596, 602
LweI GCATC 2 cut(s) 828, 846
MaeI CTAG 5 cut(s) 309, 402, 642, 954, 964
MaeII ACGT 6 cut(s) 126, 216, 252, 398, 502, 865
MaeIII GTNAC 4 cut(s) 194, 539, 665, 956
MalI GATC 5 cut(s) 34, 272, 487, 494, 646
MbiI CCGCTC 3 cut(s) 365, 651, 926
MboI GATC 5 cut(s) 32, 270, 485, 492, 644
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 1 cut(s) 32
MluCI AATT 4 cut(s) 687, 726, 788, 821
MlyI GAGTC 2 cut(s) 617, 765
MmeI TCCRAC 1 cut(s) 419
MreI CGCCGGCG 2 cut(s) 49, 517
MroNI GCCGGC 2 cut(s) 49, 517
MroXI GAANNNNTTC 2 cut(s) 217, 390
MseI TTAA 2 cut(s) 186, 462
MslI CAYNNNNRTG 2 cut(s) 537, 854
MspA1I CMGCKG 1 cut(s) 593
MspR9I CCNGG 4 cut(s) 30, 112, 330, 383
MunI CAATTG 1 cut(s) 726
Mva1269I GAATGC 2 cut(s) 575, 833
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 2 cut(s) 561, 581
NaeI GCCGGC 2 cut(s) 51, 519
NciI CCSGG 3 cut(s) 30, 330, 383
NdeII GATC 5 cut(s) 32, 270, 485, 492, 644
NgoMIV GCCGGC 2 cut(s) 49, 517
NlaIV GGNNCC 2 cut(s) 334, 895
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 2 cut(s) 194, 539
OliI CACNNNNGTG 1 cut(s) 537
PcsI WCGNNNNNNNCGW 3 cut(s) 186, 540, 756
PctI GAATGC 2 cut(s) 575, 833
PdiI GCCGGC 2 cut(s) 51, 519
PdmI GAANNNNTTC 2 cut(s) 217, 390
PfeI GAWTC 5 cut(s) 17, 320, 413, 565, 810
PflFI GACNNNGTC 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 381
PinAI ACCGGT 1 cut(s) 206
Ple19I CGATCG 1 cut(s) 488
PleI GAGTC 2 cut(s) 617, 764
PpsI GAGTC 2 cut(s) 617, 764
PshBI ATTAAT 1 cut(s) 462
Psp1406I AACGTT 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 334, 895
PspPI GGNCC 1 cut(s) 902
PsuI RGATCY 1 cut(s) 32
PsyI GACNNNGTC 1 cut(s) 8
PvuI CGATCG 1 cut(s) 488
RsaI GTAC 3 cut(s) 293, 864, 886
RsaNI GTAC 3 cut(s) 292, 863, 885
RseI CAYNNNNRTG 2 cut(s) 537, 854
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 2 cut(s) 186, 462
Sau3AI GATC 5 cut(s) 32, 270, 485, 492, 644
Sau96I GGNCC 1 cut(s) 902
SchI GAGTC 2 cut(s) 617, 765
ScrFI CCNGG 4 cut(s) 30, 112, 330, 383
SfaNI GCATC 2 cut(s) 828, 846
SgrAI CRCCGGYG 3 cut(s) 49, 517, 536
SinI GGWCC 1 cut(s) 902
SmiMI CAYNNNNRTG 2 cut(s) 537, 854
Sse9I AATT 4 cut(s) 687, 726, 788, 821
SspMI CTAG 5 cut(s) 309, 402, 642, 954, 964
StyD4I CCNGG 4 cut(s) 28, 110, 328, 381
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 3 cut(s) 10, 194, 846
TaiI ACGT 6 cut(s) 129, 219, 255, 401, 505, 868
TaqI TCGA 7 cut(s) 129, 211, 273, 300, 369, 647, 759
TaqII GACCGA 1 cut(s) 919
TasI AATT 4 cut(s) 687, 726, 788, 821
TatI WGTACW 1 cut(s) 291
TauI GCSGC 7 cut(s) 227, 584, 590, 596, 599, 602, 926
TfiI GAWTC 5 cut(s) 17, 320, 413, 565, 810
Tru1I TTAA 2 cut(s) 186, 462
Tru9I TTAA 2 cut(s) 186, 462
TscAI CASTG 2 cut(s) 167, 263
TseFI GTSAC 2 cut(s) 194, 539
TseI GCWGC 3 cut(s) 235, 584, 590
Tsp45I GTSAC 2 cut(s) 194, 539
TspDTI ATGAA 1 cut(s) 860
TspGWI ACGGA 2 cut(s) 140, 866
TspRI CASTG 2 cut(s) 167, 263
Tth111I GACNNNGTC 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 902
VspI ATTAAT 1 cut(s) 462
XbaI TCTAGA 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 2 cut(s) 217, 390
XspI CTAG 5 cut(s) 309, 402, 642, 954, 964
ZraI GACGTC 2 cut(s) 399, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.