Prupe.4G061800_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0003314
Physical Location & Seq
Reverse (-)
2958837 .. 2962674
3838 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G061800.1

Sequence Viewer

Length: 933 bp
ATGGGTGACCTAACGGACCCCCAAATGACGCCGTCCCATGCCACCGCCACCACCCCCTCCTCCAACCCTCGCCCCATGCCCGTCCGCGAAGACTGCTGGAGCGAAGACGCTACCTCCACTCTCGTCGACGCCTGGGGCCGCCGTTACCTCGAGCTCAACCGCGGGTGCCTCCGTCAGAAGGACTGGCAGGAGGTCGCTGACGCCGTCAACGCCCTTCACGGCCACACCAAGAAGACCCACCGCACCGACGTCCAGTGCAAGAACCGCATCGACACCATCAAGAAGAAGTACAAGTTCGAGATGAATAGGGTTTCGTCCTCCAACGGAACCCTAACCTCTTCTTGGCCTTTCTTCGAGAGGCTCGACGCTCTCATCGGATCTAACTACAAGAAGCCGTCTCCTTCGCCCCCGGTCGCTGTTCCGTTGCCTTTGGGGTATCGGAAGACTCCGTCTCCGGCGACCGTTGTGACGGCCGTGGGGCTGCCGCAGAAGCGGTCTGCGTCGTCTGCGGCGGTCGACGAGGGTTTCTTCAGGATGAATTACTCGGCTGTGGCTGCGGCGGCAGCGGCAGAGGCTGAGGATGATGACGACGAGGACGAGGATGAGGACGACGAGGTGAACTACGAGGTTGATGAGGAGGTTGAGATGGAGAGGGAGAGAGATAGCGGAGGCGAGATTGGAGGTGGAGGAGGAGGAGAAGGGTTGAAGAGATTGGCGAGAGCGATTGAGAGGTTCGGGGAGGTGTATCAGAGAGTGGAGGCCGAAAAGTTGAGGCAGATGGTGGACTTGGAGAAGCAGAGGATGCAATTCGCCAATGATTTGGAGGTGCAGAGGATGAATATGTTCATGGACACGCAGGTCCAGCTCGAGCGGATCAAGCACGGCAAGCGATCTGGCTCTAATGCTTTTGTGCATGGATGTGAACGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

311

Amino Acids

34.69

Weight (kDa)

5.21

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 857
AatII GACGTC 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 847
AccB1I GGYRCC 1 cut(s) 165
AccBSI CCGCTC 1 cut(s) 871
AccI GTMKAC 2 cut(s) 126, 516
AccII CGCG 2 cut(s) 87, 162
AclI AACGTT 1 cut(s) 925
AclWI GGATC 2 cut(s) 385, 881
AcoI YGGCCR 2 cut(s) 220, 471
AcuI CTGAAG 1 cut(s) 514
AcyI GRCGYC 4 cut(s) 29, 129, 201, 249
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 2 cut(s) 178, 342
AgsI TTSAA 1 cut(s) 706
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 2 cut(s) 154, 865
AluI AGCT 2 cut(s) 154, 865
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 402, 456
AlwI GGATC 2 cut(s) 385, 881
AlwNI CAGNNNCTG 1 cut(s) 575
Ama87I CYCGRG 2 cut(s) 149, 866
AoxI GGCC 5 cut(s) 136, 220, 344, 471, 759
ApeKI GCWGC 3 cut(s) 481, 554, 563
Asp700I GAANNNNTTC 1 cut(s) 842
AspS9I GGNCC 3 cut(s) 16, 136, 859
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 2 cut(s) 17, 628
AvaI CYCGRG 2 cut(s) 149, 866
AvaII GGWCC 2 cut(s) 16, 859
BanI GGYRCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 156
BbsI GAAGAC 4 cut(s) 96, 111, 239, 449
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 576
BbvI GCAGC 3 cut(s) 468, 541, 575
BccI CCATC 3 cut(s) 284, 640, 772
BceAI ACGGC 8 cut(s) 16, 126, 188, 235, 379, 458, 486, 898
BciT130I CCWGG 1 cut(s) 133
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 2 cut(s) 402, 456
BfuAI ACCTGC 1 cut(s) 847
BisI GCNGC 9 cut(s) 139, 482, 485, 510, 555, 558, 561, 564, 567
BlsI GCNGC 9 cut(s) 140, 483, 486, 511, 556, 559, 562, 565, 568
Bme1390I CCNGG 2 cut(s) 133, 410
Bme18I GGWCC 2 cut(s) 16, 859
BmeT110I CYCGRG 2 cut(s) 149, 866
BmgT120I GGNCC 3 cut(s) 16, 136, 859
BmiI GGNNCC 4 cut(s) 18, 137, 167, 328
BmrFI CCNGG 2 cut(s) 133, 410
BmsI GCATC 2 cut(s) 276, 792
BpiI GAAGAC 4 cut(s) 96, 111, 239, 449
BpmI CTGGAG 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 576
BpuMI CCSGG 1 cut(s) 410
BsaHI GRCGYC 4 cut(s) 29, 129, 201, 249
BsaJI CCNNGG 4 cut(s) 132, 160, 408, 474
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 436, 466
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 342
Bse1I ACTGG 2 cut(s) 188, 253
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 4 cut(s) 132, 160, 408, 474
BseGI GGATG 6 cut(s) 540, 586, 607, 807, 840, 923
BseLI CCNNNNNNNGG 2 cut(s) 178, 342
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 2 cut(s) 188, 253
BseRI GAGGAG 5 cut(s) 49, 650, 702, 705, 708
BseX3I CGGCCG 1 cut(s) 471
BseXI GCAGC 3 cut(s) 468, 541, 575
BsgI GTGCAG 1 cut(s) 848
Bsh1236I CGCG 2 cut(s) 87, 162
Bsh1285I CGRYCG 4 cut(s) 414, 462, 474, 516
BshFI GGCC 5 cut(s) 138, 222, 346, 473, 761
BshNI GGYRCC 1 cut(s) 165
BsiEI CGRYCG 4 cut(s) 414, 462, 474, 516
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 2 cut(s) 149, 866
BsiSI CCGG 2 cut(s) 410, 455
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 178, 342
BsmAI GTCTC 2 cut(s) 402, 456
BsmBI CGTCTC 2 cut(s) 402, 456
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 5 cut(s) 138, 222, 346, 473, 761
BsoBI CYCGRG 2 cut(s) 149, 866
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 3 cut(s) 377, 873, 890
BspANI GGCC 5 cut(s) 138, 222, 346, 473, 761
BspCNI CTCAG 1 cut(s) 568
BspFNI CGCG 2 cut(s) 87, 162
BspLI GGNNCC 4 cut(s) 18, 137, 167, 328
BspMI ACCTGC 1 cut(s) 847
BspPI GGATC 2 cut(s) 385, 881
BspT107I GGYRCC 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 871
BsrI ACTGG 2 cut(s) 188, 253
BssECI CCNNGG 4 cut(s) 132, 160, 408, 474
BssMI GATC 3 cut(s) 377, 873, 890
BssNI GRCGYC 4 cut(s) 29, 129, 201, 249
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 463
Bst6I CTCTTC 2 cut(s) 343, 701
BstACI GRCGYC 4 cut(s) 29, 129, 201, 249
BstAPI GCANNNNNTGC 1 cut(s) 802
BstC8I GCNNGC 1 cut(s) 887
BstDEI CTNAG 1 cut(s) 576
BstDSI CCRYGG 2 cut(s) 160, 474
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 6 cut(s) 540, 586, 607, 807, 840, 923
BstFNI CGCG 2 cut(s) 87, 162
BstKTI GATC 3 cut(s) 380, 876, 893
BstMAI GTCTC 2 cut(s) 402, 456
BstMBI GATC 3 cut(s) 377, 873, 890
BstMCI CGRYCG 4 cut(s) 414, 462, 474, 516
BstNI CCWGG 1 cut(s) 133
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 2 cut(s) 131, 408
BstUI CGCG 2 cut(s) 87, 162
BstV1I GCAGC 3 cut(s) 468, 541, 575
BstV2I GAAGAC 4 cut(s) 96, 111, 239, 449
BstX2I RGATCY 1 cut(s) 377
BstXI CCANNNNNNTGG 1 cut(s) 820
BstYI RGATCY 1 cut(s) 377
BstZI CGGCCG 1 cut(s) 471
BsuRI GGCC 5 cut(s) 138, 222, 346, 473, 761
BtgI CCRYGG 2 cut(s) 160, 474
BtsCI GGATG 6 cut(s) 540, 586, 607, 807, 840, 923
BtsIMutI CAGTG 1 cut(s) 260
BveI ACCTGC 1 cut(s) 847
Cac8I GCNNGC 1 cut(s) 887
CaiI CAGNNNCTG 1 cut(s) 575
Cfr13I GGNCC 3 cut(s) 16, 136, 859
Cfr42I CCGCGG 1 cut(s) 163
CseI GACGC 6 cut(s) 37, 116, 137, 209, 374, 489
Csp6I GTAC 1 cut(s) 289
CviAII CATG 4 cut(s) 38, 76, 847, 914
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 576
DpnI GATC 3 cut(s) 379, 875, 892
DpnII GATC 3 cut(s) 377, 873, 890
DrdI GACNNNNNNGTC 1 cut(s) 857
DseDI GACNNNNNNGTC 1 cut(s) 857
EaeI YGGCCR 2 cut(s) 220, 471
EagI CGGCCG 1 cut(s) 471
Eam1104I CTCTTC 2 cut(s) 343, 701
EarI CTCTTC 2 cut(s) 343, 701
Ecl136II GAGCTC 1 cut(s) 154
EclXI CGGCCG 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 16, 859
Eco52I CGGCCG 1 cut(s) 471
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 514
Eco88I CYCGRG 2 cut(s) 149, 866
Eco91I GGTNACC 1 cut(s) 5
EcoICRI GAGCTC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 156
Esp3I CGTCTC 2 cut(s) 402, 456
FaeI CATG 4 cut(s) 41, 79, 850, 917
FaiI YATR 5 cut(s) 39, 77, 842, 848, 915
FaqI GGGAC 1 cut(s) 19
FatI CATG 4 cut(s) 37, 75, 846, 913
FauI CCCGC 1 cut(s) 155
FblI GTMKAC 2 cut(s) 126, 516
Fnu4HI GCNGC 9 cut(s) 139, 482, 485, 510, 555, 558, 561, 564, 567
FokI GGATG 5 cut(s) 547, 593, 614, 814, 847
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 9 cut(s) 139, 482, 485, 510, 555, 558, 561, 564, 567
GluI GCNGC 9 cut(s) 139, 482, 485, 510, 555, 558, 561, 564, 567
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 5 cut(s) 138, 222, 346, 473, 761
HapII CCGG 2 cut(s) 410, 455
HgaI GACGC 6 cut(s) 37, 116, 137, 209, 374, 489
Hin1I GRCGYC 4 cut(s) 29, 129, 201, 249
Hin1II CATG 4 cut(s) 41, 79, 850, 917
HincII GTYRAC 3 cut(s) 127, 208, 517
HindII GTYRAC 3 cut(s) 127, 208, 517
HinfI GANTC 1 cut(s) 445
HpaII CCGG 2 cut(s) 410, 455
HphI GGTGA 2 cut(s) 17, 628
Hpy166II GTNNAC 6 cut(s) 127, 208, 517, 619, 784, 923
Hpy188I TCNGA 4 cut(s) 177, 377, 441, 750
Hpy188III TCNNGA 4 cut(s) 280, 298, 355, 532
Hpy8I GTNNAC 6 cut(s) 127, 208, 517, 619, 784, 923
Hpy99I CGWCG 8 cut(s) 128, 131, 251, 368, 505, 521, 593, 614
HpyAV CCTTC 4 cut(s) 172, 224, 411, 692
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4IV ACGT 2 cut(s) 249, 925
HpyCH4V TGCA 4 cut(s) 258, 805, 829, 913
HpyF3I CTNAG 1 cut(s) 576
HpySE526I ACGT 2 cut(s) 249, 925
Hsp92I GRCGYC 4 cut(s) 29, 129, 201, 249
Hsp92II CATG 4 cut(s) 41, 79, 850, 917
KspI CCGCGG 1 cut(s) 163
Kzo9I GATC 3 cut(s) 377, 873, 890
LmnI GCTCC 1 cut(s) 99
Lsp1109I GCAGC 3 cut(s) 468, 541, 575
LweI GCATC 2 cut(s) 276, 792
MaeII ACGT 2 cut(s) 249, 925
MaeIII GTNAC 3 cut(s) 5, 143, 466
MalI GATC 3 cut(s) 379, 875, 892
MbiI CCGCTC 1 cut(s) 871
MboI GATC 3 cut(s) 377, 873, 890
MboII GAAGA 9 cut(s) 101, 116, 244, 295, 330, 343, 454, 520, 718
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 538, 806
MlyI GAGTC 1 cut(s) 439
MmeI TCCRAC 2 cut(s) 87, 345
MroXI GAANNNNTTC 1 cut(s) 842
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 2 cut(s) 162, 566
MspI CCGG 2 cut(s) 410, 455
MspR9I CCNGG 2 cut(s) 133, 410
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 2 cut(s) 87, 162
NciI CCSGG 1 cut(s) 410
NdeII GATC 3 cut(s) 377, 873, 890
NlaIII CATG 4 cut(s) 41, 79, 850, 917
NlaIV GGNNCC 4 cut(s) 18, 137, 167, 328
NmeAIII GCCGAG 1 cut(s) 524
NmuCI GTSAC 2 cut(s) 5, 466
PaeR7I CTCGAG 2 cut(s) 149, 866
PcsI WCGNNNNNNNCGW 3 cut(s) 201, 360, 594
PdmI GAANNNNTTC 1 cut(s) 842
PflFI GACNNNGTC 3 cut(s) 31, 203, 448
PkrI GCNGC 9 cut(s) 140, 483, 486, 511, 556, 559, 562, 565, 568
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp124BI GAGCTC 1 cut(s) 156
Psp1406I AACGTT 1 cut(s) 925
Psp6I CCWGG 1 cut(s) 131
PspEI GGTNACC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 4 cut(s) 18, 137, 167, 328
PspPI GGNCC 3 cut(s) 16, 136, 859
PspXI VCTCGAGB 2 cut(s) 149, 866
PstNI CAGNNNCTG 1 cut(s) 575
PsuI RGATCY 1 cut(s) 377
PsyI GACNNNGTC 3 cut(s) 31, 203, 448
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 918
SacI GAGCTC 1 cut(s) 156
SacII CCGCGG 1 cut(s) 163
SalI GTCGAC 2 cut(s) 125, 515
SatI GCNGC 9 cut(s) 139, 482, 485, 510, 555, 558, 561, 564, 567
Sau3AI GATC 3 cut(s) 377, 873, 890
Sau96I GGNCC 3 cut(s) 16, 136, 859
SchI GAGTC 1 cut(s) 439
ScrFI CCNGG 2 cut(s) 133, 410
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 2 cut(s) 276, 792
Sfr274I CTCGAG 2 cut(s) 149, 866
Sfr303I CCGCGG 1 cut(s) 163
SgrBI CCGCGG 1 cut(s) 163
SgrDI CGTCGACG 1 cut(s) 125
SinI GGWCC 2 cut(s) 16, 859
SlaI CTCGAG 2 cut(s) 149, 866
SmiMI CAYNNNNRTG 1 cut(s) 918
SmlI CTYRAG 2 cut(s) 149, 866
SmoI CTYRAG 2 cut(s) 149, 866
Sse9I AATT 2 cut(s) 538, 806
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 131, 408
TaaI ACNGT 1 cut(s) 463
TaiI ACGT 2 cut(s) 252, 928
TaqI TCGA 8 cut(s) 126, 150, 270, 297, 354, 363, 516, 867
TasI AATT 2 cut(s) 538, 806
TatI WGTACW 1 cut(s) 288
TauI GCSGC 6 cut(s) 141, 487, 512, 560, 563, 569
TscAI CASTG 1 cut(s) 260
TseFI GTSAC 2 cut(s) 5, 466
TseI GCWGC 3 cut(s) 481, 554, 563
Tsp45I GTSAC 2 cut(s) 5, 466
TspDTI ATGAA 4 cut(s) 317, 551, 835, 851
TspGWI ACGGA 5 cut(s) 29, 161, 339, 411, 438
TspRI CASTG 1 cut(s) 260
Tth111I GACNNNGTC 3 cut(s) 31, 203, 448
VpaK11BI GGWCC 2 cut(s) 16, 859
XhoI CTCGAG 2 cut(s) 149, 866
XmiI GTMKAC 2 cut(s) 126, 516
XmnI GAANNNNTTC 1 cut(s) 842
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.