Prupe.3G118000_v2.0.a1
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0003314
Physical Location & Seq
Forward (+)
10114680 .. 10119019
4340 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G118000.5

Sequence Viewer

Length: 981 bp
ATGGACTTCGTCGCCGGCTCTCCGTCACCGGTGACGGCACCCCGGCCCAACTCCAAAACGGCGTCGGTTCCGGTCCGCGAGGACTGCTGGAGCGAGGACGCGACCTTCACGCTCATAGAGGCCTGGGGCGAGCGCCACCTCAGCCTCAACCGCGGCAACCTCCGTCAGAAGCACTGGGAAGAAGTCGCCGACGCCGTTAACGCCTGCCACGTCACTGCCGACAACCCCAGGTCCCGCCGTACGGACGTCCAGTGTAAGAACCGCGTCGACACCCTCAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCCGACTCCAATGGCGACTACACCAGCCCCTGGCCCTTCTTCTCTCTCCTCGACTCCCTCATCGGCTCCAAATTCCCCAAGCCCTCGCCGCCGCTCCCTCGCCGGAGCACTCCCTCGCCGCCGCTCCCTCGCCGGAGGCCTCCCTCGCCGCCGCTGCAGTGGACTTTTCCAGTTGCTCGGAGATCGGCAACAGTCAAACGGCCGGCGGCGGCGTTTTTTCCGGCACCTGGAGACGAACCGGTGTTGAATCAAAACTTGGATTTCTCGGCGTTTGCGGCGGTAGCTGCGGCGGCGGCGGCGGAGAGCGAAGAGTCCGAGCGGTCGCCATCGAGGTCGAGCGTGGGAGGGAGTAGGATGAGGGATCGTGATAGGGAGGTTGGTTGTGTGGAATTGGCTATGGCCATAGAGAGGTTTGCGGAGATATACGAGAGAGTAGAGCAGAGGAAACAGAGGCAGATGGTGGAGTTGGAGAAGCAGAGGATGCAATTTGCTAAGGACTTGGAGTACCATAGAATGCAGCTTTTCATGGAAACAACGAAGCATCAGCTTCGAAAGATAAAGCGCGCCAAGCGGTCATCTTCATCCCCTGGTAATAATGGCATCAAGGGGAAAAGGCTCTCTTTTACTTTTATGGTGGAGAAGTTTAACAAAGAGAACACTGAAAATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

327

Amino Acids

37.02

Weight (kDa)

9.88

Isoelectric Point (pI)

74.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
AccB1I GGYRCC 2 cut(s) 37, 532
AccB7I CCANNNNNTGG 1 cut(s) 339
AccBSI CCGCTC 3 cut(s) 403, 433, 628
AccI GTMKAC 1 cut(s) 267
AccII CGCG 5 cut(s) 78, 101, 153, 264, 873
AclWI GGATC 1 cut(s) 678
AcoI YGGCCR 2 cut(s) 509, 708
AcsI RAATTY 2 cut(s) 380, 973
AcyI GRCGYC 3 cut(s) 62, 192, 246
AfaI GTAC 3 cut(s) 241, 287, 815
AfiI CCNNNNNNNGG 4 cut(s) 241, 339, 536, 717
AgeI ACCGGT 2 cut(s) 28, 547
AgsI TTSAA 1 cut(s) 556
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 5 cut(s) 122, 227, 338, 535, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AluBI AGCT 3 cut(s) 593, 829, 856
AluI AGCT 3 cut(s) 593, 829, 856
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 1 cut(s) 678
AlwNI CAGNNNCTG 1 cut(s) 339
AoxI GGCC 6 cut(s) 44, 120, 341, 446, 509, 708
ApeKI GCWGC 3 cut(s) 463, 593, 826
ApoI RAATTY 2 cut(s) 380, 973
AsiGI ACCGGT 2 cut(s) 28, 547
AspLEI GCGC 3 cut(s) 135, 873, 875
AspS9I GGNCC 4 cut(s) 45, 73, 231, 342
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 18, 43
AsuII TTCGAA 1 cut(s) 859
AvaII GGWCC 2 cut(s) 73, 231
BalI TGGCCA 1 cut(s) 710
BanI GGYRCC 2 cut(s) 37, 532
Bbv12I GWGCWC 1 cut(s) 419
BbvCI CCTCAGC 1 cut(s) 140
BbvI GCAGC 3 cut(s) 450, 580, 838
BccI CCATC 2 cut(s) 643, 760
BceAI ACGGC 5 cut(s) 51, 75, 179, 222, 524
BcgI CGANNNNNNTGC 2 cut(s) 839, 873
BciT130I CCWGG 5 cut(s) 124, 229, 340, 537, 897
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 464
BfoI RGCGCY 1 cut(s) 136
Bme1390I CCNGG 6 cut(s) 43, 124, 229, 340, 537, 897
Bme18I GGWCC 2 cut(s) 73, 231
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 4 cut(s) 45, 73, 231, 342
BmiI GGNNCC 5 cut(s) 39, 69, 233, 376, 534
BmrFI CCNGG 6 cut(s) 43, 124, 229, 340, 537, 897
BmrI ACTGGG 1 cut(s) 184
BmsI GCATC 3 cut(s) 780, 859, 918
BmuI ACTGGG 1 cut(s) 184
BpmI CTGGAG 2 cut(s) 109, 558
Bpu10I CCTNAGC 2 cut(s) 140, 801
Bpu14I TTCGAA 1 cut(s) 859
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 43
BsaHI GRCGYC 3 cut(s) 62, 192, 246
BsaJI CCNNGG 6 cut(s) 41, 123, 151, 227, 338, 895
BsaWI WCCGGW 3 cut(s) 28, 70, 547
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 339, 536, 717
Bse118I RCCGGY 4 cut(s) 14, 28, 511, 547
Bse1I ACTGG 3 cut(s) 179, 250, 479
BseBI CCWGG 5 cut(s) 124, 229, 340, 537, 897
BseDI CCNNGG 6 cut(s) 41, 123, 151, 227, 338, 895
BseGI GGATG 3 cut(s) 669, 795, 890
BseLI CCNNNNNNNGG 4 cut(s) 241, 339, 536, 717
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 3 cut(s) 179, 250, 479
BsePI GCGCGC 1 cut(s) 871
BseRI GAGGAG 1 cut(s) 347
BseX3I CGGCCG 1 cut(s) 509
BseXI GCAGC 3 cut(s) 450, 580, 838
Bsh1236I CGCG 5 cut(s) 78, 101, 153, 264, 873
Bsh1285I CGRYCG 2 cut(s) 512, 632
BshFI GGCC 6 cut(s) 46, 122, 343, 448, 511, 710
BshNI GGYRCC 2 cut(s) 37, 532
BshTI ACCGGT 2 cut(s) 28, 547
BsiEI CGRYCG 2 cut(s) 512, 632
BsiHKAI GWGCWC 1 cut(s) 419
BsiSI CCGG 9 cut(s) 15, 29, 43, 71, 412, 442, 512, 530, 548
BsiWI CGTACG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 4 cut(s) 241, 339, 536, 717
BsmAI GTCTC 1 cut(s) 534
BsmBI CGTCTC 1 cut(s) 534
BsmFI GGGAC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 828
BsnI GGCC 6 cut(s) 46, 122, 343, 448, 511, 710
Bsp119I TTCGAA 1 cut(s) 859
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 3 cut(s) 291, 491, 670
BspANI GGCC 6 cut(s) 46, 122, 343, 448, 511, 710
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 5 cut(s) 78, 101, 153, 264, 873
BspLI GGNNCC 5 cut(s) 39, 69, 233, 376, 534
BspMAI CTGCAG 1 cut(s) 468
BspPI GGATC 1 cut(s) 678
BspT104I TTCGAA 1 cut(s) 859
BspT107I GGYRCC 2 cut(s) 37, 532
BsrBI CCGCTC 3 cut(s) 403, 433, 628
BsrFI RCCGGY 4 cut(s) 14, 28, 511, 547
BsrI ACTGG 3 cut(s) 179, 250, 479
BssAI RCCGGY 4 cut(s) 14, 28, 511, 547
BssECI CCNNGG 6 cut(s) 41, 123, 151, 227, 338, 895
BssHII GCGCGC 1 cut(s) 871
BssMI GATC 3 cut(s) 291, 491, 670
BssNI GRCGYC 3 cut(s) 62, 192, 246
Bst2UI CCWGG 5 cut(s) 124, 229, 340, 537, 897
Bst4CI ACNGT 1 cut(s) 502
Bst6I CTCTTC 1 cut(s) 612
BstACI GRCGYC 3 cut(s) 62, 192, 246
BstAPI GCANNNNNTGC 1 cut(s) 790
BstBI TTCGAA 1 cut(s) 859
BstC8I GCNNGC 5 cut(s) 16, 131, 205, 513, 873
BstDEI CTNAG 2 cut(s) 140, 801
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 3 cut(s) 669, 795, 890
BstFNI CGCG 5 cut(s) 78, 101, 153, 264, 873
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 3 cut(s) 135, 873, 875
BstKTI GATC 3 cut(s) 294, 494, 673
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 3 cut(s) 291, 491, 670
BstMCI CGRYCG 2 cut(s) 512, 632
BstNI CCWGG 5 cut(s) 124, 229, 340, 537, 897
BstSCI CCNGG 6 cut(s) 41, 122, 227, 338, 535, 895
BstSFI CTRYAG 1 cut(s) 464
BstUI CGCG 5 cut(s) 78, 101, 153, 264, 873
BstV1I GCAGC 3 cut(s) 450, 580, 838
BstZI CGGCCG 1 cut(s) 509
BsuRI GGCC 6 cut(s) 46, 122, 343, 448, 511, 710
BtgI CCRYGG 1 cut(s) 151
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 3 cut(s) 669, 795, 890
BtsI GCAGTG 2 cut(s) 213, 473
BtsIMutI CAGTG 5 cut(s) 172, 213, 257, 473, 966
Cac8I GCNNGC 5 cut(s) 16, 131, 205, 513, 873
CaiI CAGNNNCTG 1 cut(s) 339
CfoI GCGC 3 cut(s) 135, 873, 875
Cfr10I RCCGGY 4 cut(s) 14, 28, 511, 547
Cfr13I GGNCC 4 cut(s) 45, 73, 231, 342
Cfr42I CCGCGG 1 cut(s) 154
CpoI CGGWCCG 1 cut(s) 73
CseI GACGC 4 cut(s) 51, 107, 200, 253
Csp6I GTAC 3 cut(s) 240, 286, 814
CspAI ACCGGT 2 cut(s) 28, 547
CspI CGGWCCG 1 cut(s) 73
CviAII CATG 1 cut(s) 835
CviQI GTAC 3 cut(s) 240, 286, 814
DdeI CTNAG 2 cut(s) 140, 801
DpnI GATC 3 cut(s) 293, 493, 672
DpnII GATC 3 cut(s) 291, 491, 670
EaeI YGGCCR 2 cut(s) 509, 708
EagI CGGCCG 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
EciI GGCGGA 1 cut(s) 623
EclXI CGGCCG 1 cut(s) 509
Eco147I AGGCCT 2 cut(s) 122, 448
Eco47I GGWCC 2 cut(s) 73, 231
Eco52I CGGCCG 1 cut(s) 509
EcoO109I RGGNCCY 1 cut(s) 231
EcoRII CCWGG 5 cut(s) 122, 227, 338, 535, 895
Esp3I CGTCTC 1 cut(s) 534
FaeI CATG 1 cut(s) 838
FaiI YATR 7 cut(s) 116, 707, 713, 733, 819, 836, 941
FalI AAGNNNNNCTT 2 cut(s) 913, 945
FaqI GGGAC 1 cut(s) 217
FatI CATG 1 cut(s) 834
FauI CCCGC 1 cut(s) 242
FblI GTMKAC 1 cut(s) 267
FokI GGATG 3 cut(s) 676, 802, 877
FspBI CTAG 1 cut(s) 303
GlaI GCGC 3 cut(s) 134, 872, 874
GsuI CTGGAG 2 cut(s) 109, 558
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 6 cut(s) 46, 122, 343, 448, 511, 710
HapII CCGG 9 cut(s) 15, 29, 43, 71, 412, 442, 512, 530, 548
HgaI GACGC 4 cut(s) 51, 107, 200, 253
HhaI GCGC 3 cut(s) 135, 873, 875
Hin1I GRCGYC 3 cut(s) 62, 192, 246
Hin1II CATG 1 cut(s) 838
Hin6I GCGC 3 cut(s) 133, 871, 873
HinP1I GCGC 3 cut(s) 133, 871, 873
HincII GTYRAC 2 cut(s) 199, 268
HindII GTYRAC 2 cut(s) 199, 268
HinfI GANTC 4 cut(s) 314, 362, 556, 620
HpaI GTTAAC 1 cut(s) 199
HpaII CCGG 9 cut(s) 15, 29, 43, 71, 412, 442, 512, 530, 548
HphI GGTGA 2 cut(s) 18, 43
Hpy166II GTNNAC 3 cut(s) 199, 268, 471
Hpy188I TCNGA 4 cut(s) 168, 313, 489, 625
Hpy188III TCNNGA 3 cut(s) 277, 295, 674
Hpy8I GTNNAC 3 cut(s) 199, 268, 471
Hpy99I CGWCG 4 cut(s) 14, 67, 194, 269
HpyAV CCTTC 3 cut(s) 115, 292, 355
HpyCH4III ACNGT 1 cut(s) 502
HpyCH4IV ACGT 2 cut(s) 210, 246
HpyCH4V TGCA 3 cut(s) 466, 793, 826
HpyF3I CTNAG 2 cut(s) 140, 801
HpySE526I ACGT 2 cut(s) 210, 246
Hsp92I GRCGYC 3 cut(s) 62, 192, 246
Hsp92II CATG 1 cut(s) 838
HspAI GCGC 3 cut(s) 133, 871, 873
KroI GCCGGC 2 cut(s) 14, 511
KroNI GCCGGC 2 cut(s) 16, 513
KspAI GTTAAC 1 cut(s) 199
KspI CCGCGG 1 cut(s) 154
Kzo9I GATC 3 cut(s) 291, 491, 670
LmnI GCTCC 5 cut(s) 90, 380, 408, 414, 438
Lsp1109I GCAGC 3 cut(s) 450, 580, 838
LweI GCATC 3 cut(s) 780, 859, 918
MaeI CTAG 1 cut(s) 303
MaeII ACGT 2 cut(s) 210, 246
MaeIII GTNAC 3 cut(s) 24, 31, 211
MalI GATC 3 cut(s) 293, 493, 672
MbiI CCGCTC 3 cut(s) 403, 433, 628
MboI GATC 3 cut(s) 291, 491, 670
MboII GAAGA 5 cut(s) 191, 292, 340, 629, 879
MhlI GDGCHC 1 cut(s) 419
MlsI TGGCCA 1 cut(s) 710
MluCI AATT 4 cut(s) 380, 698, 794, 973
MluNI TGGCCA 1 cut(s) 710
MlyI GAGTC 3 cut(s) 308, 356, 629
MmeI TCCRAC 2 cut(s) 336, 756
Mox20I TGGCCA 1 cut(s) 710
MroNI GCCGGC 2 cut(s) 14, 511
MscI TGGCCA 1 cut(s) 710
MseI TTAA 2 cut(s) 198, 954
Msp20I TGGCCA 1 cut(s) 710
MspA1I CMGCKG 2 cut(s) 153, 463
MspI CCGG 9 cut(s) 15, 29, 43, 71, 412, 442, 512, 530, 548
MspR9I CCNGG 6 cut(s) 43, 124, 229, 340, 537, 897
Mva1269I GAATGC 1 cut(s) 828
MvaI CCWGG 5 cut(s) 124, 229, 340, 537, 897
MvnI CGCG 5 cut(s) 78, 101, 153, 264, 873
NaeI GCCGGC 2 cut(s) 16, 513
NciI CCSGG 1 cut(s) 43
NdeII GATC 3 cut(s) 291, 491, 670
NgoMIV GCCGGC 2 cut(s) 14, 511
NlaIII CATG 1 cut(s) 838
NlaIV GGNNCC 5 cut(s) 39, 69, 233, 376, 534
NmeAIII GCCGAG 1 cut(s) 554
NmuCI GTSAC 3 cut(s) 24, 31, 211
NspV TTCGAA 1 cut(s) 859
PauI GCGCGC 1 cut(s) 871
PceI AGGCCT 2 cut(s) 122, 448
PcsI WCGNNNNNNNCGW 3 cut(s) 192, 207, 216
PctI GAATGC 1 cut(s) 828
PdiI GCCGGC 2 cut(s) 16, 513
PfeI GAWTC 1 cut(s) 556
Pfl23II CGTACG 1 cut(s) 239
PflFI GACNNNGTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 339
PinAI ACCGGT 2 cut(s) 28, 547
PleI GAGTC 3 cut(s) 308, 356, 628
PpsI GAGTC 3 cut(s) 308, 356, 628
PpuMI RGGWCCY 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 231
Psp6I CCWGG 5 cut(s) 122, 227, 338, 535, 895
PspGI CCWGG 5 cut(s) 122, 227, 338, 535, 895
PspLI CGTACG 1 cut(s) 239
PspN4I GGNNCC 5 cut(s) 39, 69, 233, 376, 534
PspPI GGNCC 4 cut(s) 45, 73, 231, 342
PspPPI RGGWCCY 1 cut(s) 231
PstI CTGCAG 1 cut(s) 468
PstNI CAGNNNCTG 1 cut(s) 339
PsyI GACNNNGTC 1 cut(s) 8
PteI GCGCGC 1 cut(s) 871
RsaI GTAC 3 cut(s) 241, 287, 815
RsaNI GTAC 3 cut(s) 240, 286, 814
Rsr2I CGGWCCG 1 cut(s) 73
RsrII CGGWCCG 1 cut(s) 73
SacII CCGCGG 1 cut(s) 154
SalI GTCGAC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 198, 954
Sau3AI GATC 3 cut(s) 291, 491, 670
Sau96I GGNCC 4 cut(s) 45, 73, 231, 342
SchI GAGTC 3 cut(s) 308, 356, 629
ScrFI CCNGG 6 cut(s) 43, 124, 229, 340, 537, 897
SduI GDGCHC 1 cut(s) 419
SfaNI GCATC 3 cut(s) 780, 859, 918
SfcI CTRYAG 1 cut(s) 464
Sfr303I CCGCGG 1 cut(s) 154
SfuI TTCGAA 1 cut(s) 859
SgrAI CRCCGGYG 1 cut(s) 28
SgrBI CCGCGG 1 cut(s) 154
SinI GGWCC 2 cut(s) 73, 231
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 4 cut(s) 380, 698, 794, 973
SseBI AGGCCT 2 cut(s) 122, 448
SspMI CTAG 1 cut(s) 303
StuI AGGCCT 2 cut(s) 122, 448
StyD4I CCNGG 6 cut(s) 41, 122, 227, 338, 535, 895
TaaI ACNGT 1 cut(s) 502
TaiI ACGT 2 cut(s) 213, 249
TaqI TCGA 6 cut(s) 267, 294, 360, 638, 644, 859
TasI AATT 4 cut(s) 380, 698, 794, 973
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 556
Tru1I TTAA 2 cut(s) 198, 954
Tru9I TTAA 2 cut(s) 198, 954
TscAI CASTG 5 cut(s) 179, 220, 257, 473, 973
TseFI GTSAC 3 cut(s) 24, 31, 211
TseI GCWGC 3 cut(s) 463, 593, 826
Tsp45I GTSAC 3 cut(s) 24, 31, 211
TspDTI ATGAA 2 cut(s) 823, 879
TspGWI ACGGA 3 cut(s) 12, 152, 257
TspRI CASTG 5 cut(s) 179, 220, 257, 473, 973
Tth111I GACNNNGTC 1 cut(s) 8
Van91I CCANNNNNTGG 1 cut(s) 339
VpaK11BI GGWCC 2 cut(s) 73, 231
XapI RAATTY 2 cut(s) 380, 973
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 1 cut(s) 303
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.