Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003314

Physical Location & Seq

Genomic Coordinates Reverse (-)

7130808 .. 7134302

Gene Structure 3495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAATTACTCGGCGGTCGCTGCTGCGGCGGCGGCGGAGAACGACGACGACGACGAAGAGGATGAGGAGGATGAGGAAGATAACGACGACGGGGATGAGGAGGCGGAGGTGGAGAGGGAGAGGGAGAGAGACAGCGACGGCGAGATTGGAGGCGGCGGAGGAGAAGGGTTGAAGAGATTGGCGAGGGCAATAGAGAGGTTTGGGGAGGTGTATCAGAGAGTGGAGGCTGAGAAGTTGAGGCAGATGGTGGAGTTGGAAAAGCAGAGAATGCAGTTTGCTAAGGACTTGGAGGTTCAGAGAATGAGGATGTTCATGGACACACAGGTCCAGCTGGAGCGGATCAAGCACGGCAAGCGACCCGGCTCTAATGATATTTATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

127

Amino Acids

14.57

Weight (kDa)

4.35

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58630 AT3G58630
fragaria_vesca	FvH4_3g07760 FvH4_3g07760 FvH4_3g07760 FvH4_3g07760
malus_domestica	MD05G1300700.v1.1 MD10G1279600.v1.1
prunus_persica	Prupe.3G118000_v2.0.a1 Prupe.3G118000_v2.0.a1 Prupe.3G118000_v2.0.a1 Prupe.3G118000_v2.0.a1 Prupe.3G118000_v2.0.a1 Prupe.3G118000_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1
pyrus_communis	pycom05g27860 pycom10g23340
rosa_chinensis	RchiOBHm_Chr5g0010841
rosa_laevigata	RLG00000031785
rosa_multiflora	Rmu_sc0000109.1_g000012
rosa_roxburghii	Rroxscaffold_1G00065550
rosa_rugosa	Rorug04G0452800 Rorug04G0452900 Rorug04G0453000
rosa_samantha	Rh5BG079900 Rh5CG092500 Rh5DG080000
rosa_wichuraiana	Rw0G017950 Rw0G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	323
AccBSI	CCGCTC	1 cut(s)	337
AciI	CCGC	9 cut(s)	14, 26, 29, 32, 35, 104, 153, 156, 337
AclWI	GGATC	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	2 cut(s)	331, 381
AluI	AGCT	2 cut(s)	331, 381
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	347
ApeKI	GCWGC	2 cut(s)	20, 23
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	360
AvaII	GGWCC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	7, 10
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	2 cut(s)	154, 364
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	1 cut(s)	382
BisI	GCNGC	6 cut(s)	21, 24, 27, 30, 33, 154
BlsI	GCNGC	6 cut(s)	22, 25, 28, 31, 34, 155
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	360
BseGI	GGATG	4 cut(s)	67, 76, 100, 312
BseMII	CTCAG	1 cut(s)	219
BseRI	GAGGAG	3 cut(s)	80, 113, 174
BseXI	GCAGC	2 cut(s)	7, 10
Bsh1285I	CGRYCG	1 cut(s)	18
BsiEI	CGRYCG	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	360
BsmAI	GTCTC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	339
BspACI	CCGC	9 cut(s)	14, 26, 29, 32, 35, 104, 153, 156, 337
BspCNI	CTCAG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	347
BsrBI	CCGCTC	1 cut(s)	337
BssMI	GATC	1 cut(s)	339
Bst6I	CTCTTC	2 cut(s)	51, 167
BstAPI	GCANNNNNTGC	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	228, 279
BstF5I	GGATG	4 cut(s)	67, 76, 100, 312
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	339
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 26, 29, 32, 268, 343, 352
BstSCI	CCNGG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	7, 10
BtsCI	GGATG	4 cut(s)	67, 76, 100, 312
Cac8I	GCNNGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	325
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	4 cut(s)	227, 331, 363, 381
CviKI_1	RGCY	4 cut(s)	227, 331, 363, 381
DdeI	CTNAG	2 cut(s)	228, 279
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
Eam1104I	CTCTTC	2 cut(s)	51, 167
EarI	CTCTTC	2 cut(s)	51, 167
EciI	GGCGGA	3 cut(s)	50, 119, 171
Eco47I	GGWCC	1 cut(s)	325
FaeI	CATG	1 cut(s)	316
FaiI	YATR	2 cut(s)	314, 378
FatI	CATG	1 cut(s)	312
Fnu4HI	GCNGC	6 cut(s)	21, 24, 27, 30, 33, 154
FokI	GGATG	4 cut(s)	74, 83, 107, 319
Fsp4HI	GCNGC	6 cut(s)	21, 24, 27, 30, 33, 154
FspBI	CTAG	1 cut(s)	382
GluI	GCNGC	6 cut(s)	21, 24, 27, 30, 33, 154
GsuI	CTGGAG	1 cut(s)	353
HapII	CCGG	1 cut(s)	360
Hin1II	CATG	1 cut(s)	316
HpaII	CCGG	1 cut(s)	360
Hpy188I	TCNGA	2 cut(s)	216, 297
Hpy99I	CGWCG	7 cut(s)	47, 50, 53, 56, 89, 92, 140
HpyAV	CCTTC	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 26, 29, 32, 268, 343, 352
HpyF3I	CTNAG	2 cut(s)	228, 279
Hsp92II	CATG	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	4 cut(s)	308, 317, 341, 373
Lsp1109I	GCAGC	2 cut(s)	7, 10
MaeI	CTAG	1 cut(s)	382
MalI	GATC	1 cut(s)	341
MbiI	CCGCTC	1 cut(s)	337
MboI	GATC	1 cut(s)	339
MboII	GAAGA	3 cut(s)	68, 89, 184
MluCI	AATT	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	273
MwoI	GCNNNNNNNGC	7 cut(s)	20, 26, 29, 32, 268, 343, 352
NciI	CCSGG	1 cut(s)	360
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 51
PctI	GAATGC	1 cut(s)	273
PkrI	GCNGC	6 cut(s)	22, 25, 28, 31, 34, 155
PspPI	GGNCC	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	331
SatI	GCNGC	6 cut(s)	21, 24, 27, 30, 33, 154
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	360
SetI	ASST	7 cut(s)	111, 200, 210, 294, 327, 333, 383
SinI	GGWCC	1 cut(s)	325
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	9 cut(s)	14, 26, 29, 32, 35, 104, 153, 156, 337
SspMI	CTAG	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	358
TasI	AATT	1 cut(s)	4
TauI	GCSGC	4 cut(s)	29, 32, 35, 156
TseI	GCWGC	2 cut(s)	20, 23
TspDTI	ATGAA	2 cut(s)	17, 301
VpaK11BI	GGWCC	1 cut(s)	325
XspI	CTAG	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.