Rroxscaffold_1G00065550
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003314
Physical Location & Seq
Forward (+)
87208588 .. 87209544
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00065550.1

Sequence Viewer

Length: 957 bp
ATGGGCGACCTAACGGAATCCTCGCTCACGCCGTCAACCACCACCCCCAATTCCTCCTCAAACCCTAGGCCCATGCCCGTCCGCGAGGACTGCTGGAGCGAAGACGCCACCTCGACTCTCATCGACTCCTGGGGCAGCCGTTACCTCGAGCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGCAGGAGGTCGCCGACGCCGTCAACGCCCTCCACGGCCACACCAAGAAGACGCACCGTACGGACGTCCAGTGCAAGAATCGAATTGATACCATCAAGAAGAAGTACAAGGTCGAGAAGGCTAGGGTTTCTGGAGGATTGACCTCTTCCTGGCCTTTTTTCGATCGCCTCGACGCTCTCATCGGATCTAACGTCAAGAAGCCCTCGCCGTCGTCGCTCTCGCCTTCGCCGCCGGTCGCGGTTCCGCTGCCGCTGGCGTACCGGAAGCCTTCGCCGGCGAGGCCGGTCGTGACGGCCGTGGCTCTGCCGCAGAAGAGGTCGGCGTCCGCGGCGGCGATGAACGAGGGGTTCTTCAGGATGAATTACTCGGCGGTCGCTGCTGCGGCGGCGGCGGAGAACGACGACGACGACGAAGAGGATGAGGAGGATGAGGAAGATAACGACGACGGGGATGAGGAGGCGGAGGTGGAGAGGGAGAGAGACAGCGACGGCGAGATTGGAGGCGGCGGCGGCGTAGGAGGAGGAGGAGGAGAAGGGTTGAAGAGATTGGCGAGGGCAATAGAGAGGTTTGGGGAGGTGTATCAGAGAGTGGAGGCTGAAAAGTTGAGGCAGATGGTGGAGTTGGAAAAGCAGAGAATGCAGTTTGCTAAGGACTTGGAGGTTCAGAGAATGAGGATGTTCATGGACACACAGGTCCAGCTGGAGCGGATCAAGCACGGCAAGCGACCCGGCTCTAATGGTGAGCCGAATCTGTCAGCTTTCTTCTGTATGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

318

Amino Acids

35.15

Weight (kDa)

5.17

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 30 - 120 2.5e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 872
AatII GACGTC 1 cut(s) 249
AccBSI CCGCTC 1 cut(s) 886
AccII CGCG 4 cut(s) 84, 159, 419, 509
AclWI GGATC 2 cut(s) 373, 896
AcoI YGGCCR 2 cut(s) 217, 474
AcuI CTGAAG 1 cut(s) 517
AcyI GRCGYC 4 cut(s) 105, 198, 246, 503
AfaI GTAC 3 cut(s) 241, 287, 440
AfiI CCNNNNNNNGG 2 cut(s) 175, 330
AgsI TTSAA 1 cut(s) 721
AjnI CCWGG 2 cut(s) 128, 329
AluBI AGCT 3 cut(s) 151, 880, 938
AluI AGCT 3 cut(s) 151, 880, 938
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 654
AlwI GGATC 2 cut(s) 373, 896
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 5 cut(s) 68, 217, 332, 461, 474
ApeKI GCWGC 4 cut(s) 135, 427, 557, 560
AspA2I CCTAGG 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 69, 874
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 1 cut(s) 932
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 874
AvrII CCTAGG 1 cut(s) 65
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 2 cut(s) 108, 236
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 4 cut(s) 147, 414, 544, 547
BccI CCATC 2 cut(s) 281, 787
BceAI ACGGC 9 cut(s) 16, 123, 185, 232, 373, 461, 489, 685, 913
BciT130I CCWGG 2 cut(s) 130, 331
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 1 cut(s) 654
BfaI CTAG 2 cut(s) 66, 303
BfmI CTRYAG 1 cut(s) 953
BglI GCCNNNNNGGC 1 cut(s) 460
BlnI CCTAGG 1 cut(s) 65
Bme1390I CCNGG 3 cut(s) 130, 331, 909
Bme18I GGWCC 1 cut(s) 874
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 69, 874
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 3 cut(s) 130, 331, 909
BpiI GAAGAC 2 cut(s) 108, 236
BpmI CTGGAG 3 cut(s) 115, 333, 902
Bpu10I CCTNAGC 1 cut(s) 828
BpuMI CCSGG 1 cut(s) 909
BsaHI GRCGYC 4 cut(s) 105, 198, 246, 503
BsaJI CCNNGG 6 cut(s) 65, 129, 157, 214, 477, 507
BsaWI WCCGGW 1 cut(s) 441
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 330
Bse118I RCCGGY 3 cut(s) 412, 454, 463
Bse1I ACTGG 2 cut(s) 185, 250
BseBI CCWGG 2 cut(s) 130, 331
BseDI CCNNGG 6 cut(s) 65, 129, 157, 214, 477, 507
BseGI GGATG 5 cut(s) 543, 604, 613, 637, 861
BseLI CCNNNNNNNGG 2 cut(s) 175, 330
BseNI ACTGG 2 cut(s) 185, 250
BseRI GAGGAG 7 cut(s) 46, 617, 650, 714, 717, 720, 723
BseX3I CGGCCG 1 cut(s) 474
BseXI GCAGC 4 cut(s) 147, 414, 544, 547
Bsh1236I CGCG 4 cut(s) 84, 159, 419, 509
Bsh1285I CGRYCG 5 cut(s) 346, 417, 468, 477, 555
BshFI GGCC 5 cut(s) 70, 219, 334, 463, 476
BsiEI CGRYCG 5 cut(s) 346, 417, 468, 477, 555
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 5 cut(s) 413, 442, 455, 464, 909
BsiWI CGTACG 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 175, 330
BsmAI GTCTC 1 cut(s) 654
BsmI GAATGC 1 cut(s) 822
BsnI GGCC 5 cut(s) 70, 219, 334, 463, 476
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 3 cut(s) 343, 365, 888
BspANI GGCC 5 cut(s) 70, 219, 334, 463, 476
BspFNI CGCG 4 cut(s) 84, 159, 419, 509
BspLI GGNNCC 1 cut(s) 423
BspPI GGATC 2 cut(s) 373, 896
BsrBI CCGCTC 1 cut(s) 886
BsrFI RCCGGY 3 cut(s) 412, 454, 463
BsrI ACTGG 2 cut(s) 185, 250
BssAI RCCGGY 3 cut(s) 412, 454, 463
BssECI CCNNGG 6 cut(s) 65, 129, 157, 214, 477, 507
BssMI GATC 3 cut(s) 343, 365, 888
BssNI GRCGYC 4 cut(s) 105, 198, 246, 503
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 130, 331
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 4 cut(s) 331, 488, 588, 716
BstACI GRCGYC 4 cut(s) 105, 198, 246, 503
BstAPI GCANNNNNTGC 1 cut(s) 817
BstC8I GCNNGC 3 cut(s) 435, 456, 902
BstDEI CTNAG 1 cut(s) 828
BstDSI CCRYGG 4 cut(s) 157, 214, 477, 507
BstF5I GGATG 5 cut(s) 543, 604, 613, 637, 861
BstFNI CGCG 4 cut(s) 84, 159, 419, 509
BstKTI GATC 3 cut(s) 346, 368, 891
BstMAI GTCTC 1 cut(s) 654
BstMBI GATC 3 cut(s) 343, 365, 888
BstMCI CGRYCG 5 cut(s) 346, 417, 468, 477, 555
BstNI CCWGG 2 cut(s) 130, 331
BstSCI CCNGG 3 cut(s) 128, 329, 907
BstSFI CTRYAG 1 cut(s) 953
BstUI CGCG 4 cut(s) 84, 159, 419, 509
BstV1I GCAGC 4 cut(s) 147, 414, 544, 547
BstV2I GAAGAC 2 cut(s) 108, 236
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BstZI CGGCCG 1 cut(s) 474
BsuRI GGCC 5 cut(s) 70, 219, 334, 463, 476
BtgI CCRYGG 4 cut(s) 157, 214, 477, 507
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 5 cut(s) 543, 604, 613, 637, 861
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 435, 456, 902
Cfr10I RCCGGY 3 cut(s) 412, 454, 463
Cfr13I GGNCC 2 cut(s) 69, 874
Cfr42I CCGCGG 2 cut(s) 160, 510
CseI GACGC 5 cut(s) 113, 206, 241, 362, 492
Csp6I GTAC 3 cut(s) 240, 286, 439
CviAII CATG 2 cut(s) 73, 862
CviQI GTAC 3 cut(s) 240, 286, 439
DdeI CTNAG 1 cut(s) 828
DpnI GATC 3 cut(s) 345, 367, 890
DpnII GATC 3 cut(s) 343, 365, 888
DrdI GACNNNNNNGTC 1 cut(s) 872
DseDI GACNNNNNNGTC 1 cut(s) 872
EaeI YGGCCR 2 cut(s) 217, 474
EagI CGGCCG 1 cut(s) 474
Eam1104I CTCTTC 4 cut(s) 331, 488, 588, 716
EarI CTCTTC 4 cut(s) 331, 488, 588, 716
EciI GGCGGA 3 cut(s) 158, 587, 656
Ecl136II GAGCTC 1 cut(s) 151
EclXI CGGCCG 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 874
Eco52I CGGCCG 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 128, 329
EcoT14I CCWWGG 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 2 cut(s) 76, 865
FaiI YATR 4 cut(s) 74, 863, 950, 955
FatI CATG 2 cut(s) 72, 861
FokI GGATG 5 cut(s) 550, 611, 620, 644, 868
FriOI GRGCYC 1 cut(s) 153
FspBI CTAG 2 cut(s) 66, 303
GsuI CTGGAG 3 cut(s) 115, 333, 902
HaeIII GGCC 5 cut(s) 70, 219, 334, 463, 476
HapII CCGG 5 cut(s) 413, 442, 455, 464, 909
HgaI GACGC 5 cut(s) 113, 206, 241, 362, 492
Hin1I GRCGYC 4 cut(s) 105, 198, 246, 503
Hin1II CATG 2 cut(s) 76, 865
HincII GTYRAC 2 cut(s) 36, 205
HindII GTYRAC 2 cut(s) 36, 205
HinfI GANTC 5 cut(s) 17, 115, 125, 259, 928
HpaII CCGG 5 cut(s) 413, 442, 455, 464, 909
HphI GGTGA 1 cut(s) 932
Hpy166II GTNNAC 2 cut(s) 36, 205
Hpy188I TCNGA 3 cut(s) 365, 765, 846
Hpy188III TCNNGA 6 cut(s) 277, 295, 312, 376, 469, 535
Hpy8I GTNNAC 2 cut(s) 36, 205
HpyAV CCTTC 5 cut(s) 169, 292, 414, 459, 707
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 2 cut(s) 246, 372
HpyCH4V TGCA 2 cut(s) 255, 820
HpyF3I CTNAG 1 cut(s) 828
HpySE526I ACGT 2 cut(s) 246, 372
Hsp92I GRCGYC 4 cut(s) 105, 198, 246, 503
Hsp92II CATG 2 cut(s) 76, 865
KroI GCCGGC 1 cut(s) 454
KroNI GCCGGC 1 cut(s) 456
KspI CCGCGG 2 cut(s) 160, 510
Kzo9I GATC 3 cut(s) 343, 365, 888
LmnI GCTCC 2 cut(s) 96, 883
Lsp1109I GCAGC 4 cut(s) 147, 414, 544, 547
MaeI CTAG 2 cut(s) 66, 303
MaeII ACGT 2 cut(s) 246, 372
MaeIII GTNAC 2 cut(s) 140, 469
MalI GATC 3 cut(s) 345, 367, 890
MbiI CCGCTC 1 cut(s) 886
MboI GATC 3 cut(s) 343, 365, 888
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 3 cut(s) 49, 264, 541
MlyI GAGTC 2 cut(s) 109, 119
MmeI TCCRAC 1 cut(s) 783
MreI CGCCGGCG 1 cut(s) 454
MroNI GCCGGC 1 cut(s) 454
MspA1I CMGCKG 5 cut(s) 159, 427, 433, 509, 880
MspI CCGG 5 cut(s) 413, 442, 455, 464, 909
MspR9I CCNGG 3 cut(s) 130, 331, 909
Mva1269I GAATGC 1 cut(s) 822
MvaI CCWGG 2 cut(s) 130, 331
MvnI CGCG 4 cut(s) 84, 159, 419, 509
NaeI GCCGGC 1 cut(s) 456
NciI CCSGG 1 cut(s) 909
NdeII GATC 3 cut(s) 343, 365, 888
NgoMIV GCCGGC 1 cut(s) 454
NlaIII CATG 2 cut(s) 76, 865
NlaIV GGNNCC 1 cut(s) 423
NmeAIII GCCGAG 1 cut(s) 527
NmuCI GTSAC 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 146
PcsI WCGNNNNNNNCGW 7 cut(s) 29, 198, 348, 369, 474, 585, 588
PctI GAATGC 1 cut(s) 822
PdiI GCCGGC 1 cut(s) 456
PfeI GAWTC 3 cut(s) 17, 259, 928
Pfl23II CGTACG 1 cut(s) 239
PflFI GACNNNGTC 1 cut(s) 200
Ple19I CGATCG 1 cut(s) 346
PleI GAGTC 2 cut(s) 109, 119
PpsI GAGTC 2 cut(s) 109, 119
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 128, 329
PspGI CCWGG 2 cut(s) 128, 329
PspLI CGTACG 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 2 cut(s) 69, 874
PspXI VCTCGAGB 1 cut(s) 146
PsuI RGATCY 1 cut(s) 365
PsyI GACNNNGTC 1 cut(s) 200
PvuI CGATCG 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 3 cut(s) 241, 287, 440
RsaNI GTAC 3 cut(s) 240, 286, 439
SacI GAGCTC 1 cut(s) 153
SacII CCGCGG 2 cut(s) 160, 510
Sau3AI GATC 3 cut(s) 343, 365, 888
Sau96I GGNCC 2 cut(s) 69, 874
SchI GAGTC 2 cut(s) 109, 119
ScrFI CCNGG 3 cut(s) 130, 331, 909
SduI GDGCHC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 953
Sfr274I CTCGAG 1 cut(s) 146
Sfr303I CCGCGG 2 cut(s) 160, 510
SgrAI CRCCGGYG 1 cut(s) 454
SgrBI CCGCGG 2 cut(s) 160, 510
SinI GGWCC 1 cut(s) 874
SlaI CTCGAG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 3 cut(s) 49, 264, 541
SspMI CTAG 2 cut(s) 66, 303
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 128, 329, 907
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 2 cut(s) 249, 375
TaqI TCGA 7 cut(s) 113, 123, 147, 262, 294, 342, 351
TasI AATT 3 cut(s) 49, 264, 541
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 3 cut(s) 17, 259, 928
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 4 cut(s) 135, 427, 557, 560
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 3 cut(s) 533, 554, 850
TspGWI ACGGA 2 cut(s) 29, 257
TspRI CASTG 1 cut(s) 257
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 874
XhoI CTCGAG 1 cut(s) 146
XmaJI CCTAGG 1 cut(s) 65
XspI CTAG 2 cut(s) 66, 303
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.