FvH4_3g07760
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003314
Physical Location & Seq
Forward (+)
4559287 .. 4563098
3812 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07760.t4

Sequence Viewer

Length: 930 bp
ATGGGCGACCTAACGGAATCCCTGACGCCGTCAACCGCCACCGCCACCCCCAATTCCTCCTCAAACCCTAGGCCCATGCCGGTCCGCGAGGACTGCTGGAGCGAAGACGCCACGTCGACTCTCATCGACGCCTGGGGCCGCCGTTACGTCGAGCTCAACCGCGGCAATCTCCGCCAGAAAGACTGGCAGGAGGTCGCCGACGCCGTCAACGCTCTTCACGGCCACACCAAGAAGACGCACCGCACCGATGTGCAGTGCAAGAATCGGATCGATACCATCAAGAAGAAGTACAAGGTCGAGAAGGCTAGGGTCTCCGGAGGCTTCAATTCTTCCTGGCCTTTCTTCGATCGCCTTGATTCTCTGATCGGATCCACCGTCAAGAAGCCCTCGCCGTCGCTCTCGCCGCCGGTCGCCGTTCCCCTCCCGCTGGCGTACCGGAAGCCGTCTCCGGCGAGGCCGGTCGTCACGGCCGTCGCTCTGCCGCAGAAGCGGTCGGCGTCCGCGGCGGCGCTGAACGAGGGGTTCTTTAGGATGAATTACTCCGCCGTTGCTGCTGCGGCCGCGGCGGAGAATGACGACGATGATGACGAGGACGAGGAGGACGAGGAGGAGGAGGAAGATAACGACGACGGAGATGAGGAGGCGGAGGTGGAGAAGGAGAGGGACAGCGACGGCGAGATTGGTGGCGGTGGCGGAGGAGGAGTAGGAGGAGAAGGGTTGAAGAGATTGGCGAGGGCAATAGAGAGGTTTGGGGAGGTGTATCAGAGAGTGGAGGCTGACAAGATAAGGCAGATGACGGAGTTGGAAAAGCAGAGGATGCAGTTTGCGAAGGACTTAGAGATTCAGAGAATGAGTATGTTCATGGACACACAGGTCCAGCTGGAGCGGATCAAGCACGGCAAGCGACCGGGCTCTAATGGTCATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

310

Amino Acids

34.22

Weight (kDa)

5.1

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 31 - 121 2.5e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 872
AccBSI CCGCTC 1 cut(s) 886
AccI GTMKAC 1 cut(s) 116
AccII CGCG 4 cut(s) 87, 162, 503, 563
AccIII TCCGGA 1 cut(s) 314
AclWI GGATC 4 cut(s) 275, 363, 376, 896
AcoI YGGCCR 3 cut(s) 220, 468, 558
AcyI GRCGYC 5 cut(s) 26, 108, 129, 201, 497
AfaI GTAC 2 cut(s) 290, 434
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 2 cut(s) 325, 721
AhdI GACNNNNNGTC 1 cut(s) 112
AjiI CACGTC 1 cut(s) 114
AjnI CCWGG 2 cut(s) 131, 332
AleI CACNNNNGTG 1 cut(s) 248
AluBI AGCT 2 cut(s) 154, 880
AluI AGCT 2 cut(s) 154, 880
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 316, 450
AlwI GGATC 4 cut(s) 275, 363, 376, 896
Aor13HI TCCGGA 1 cut(s) 314
AoxI GGCC 7 cut(s) 71, 136, 220, 335, 455, 468, 558
ApeKI GCWGC 2 cut(s) 551, 554
AspA2I CCTAGG 1 cut(s) 68
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 4 cut(s) 72, 82, 136, 874
AsuC2I CCSGG 1 cut(s) 909
AvaII GGWCC 2 cut(s) 82, 874
AvrII CCTAGG 1 cut(s) 68
BamHI GGATCC 1 cut(s) 368
BanII GRGCYC 2 cut(s) 156, 914
BbsI GAAGAC 2 cut(s) 111, 239
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 538, 541
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 2 cut(s) 133, 334
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 2 cut(s) 316, 450
BfaI CTAG 2 cut(s) 69, 306
BfoI RGCGCY 1 cut(s) 512
BlnI CCTAGG 1 cut(s) 68
Bme1390I CCNGG 3 cut(s) 133, 334, 909
Bme18I GGWCC 2 cut(s) 82, 874
BmeRI GACNNNNNGTC 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 114
BmgT120I GGNCC 4 cut(s) 72, 82, 136, 874
BmiI GGNNCC 2 cut(s) 137, 370
BmrFI CCNGG 3 cut(s) 133, 334, 909
BmsI GCATC 1 cut(s) 807
BpiI GAAGAC 2 cut(s) 111, 239
BpmI CTGGAG 2 cut(s) 118, 902
BpuMI CCSGG 1 cut(s) 909
Bsa29I ATCGAT 1 cut(s) 270
BsaHI GRCGYC 5 cut(s) 26, 108, 129, 201, 497
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 5 cut(s) 68, 132, 160, 501, 561
BsaWI WCCGGW 2 cut(s) 314, 435
BsaXI ACNNNNNCTCC 2 cut(s) 687, 717
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse118I RCCGGY 3 cut(s) 79, 406, 457
Bse1I ACTGG 1 cut(s) 188
BseAI TCCGGA 1 cut(s) 314
BseBI CCWGG 2 cut(s) 133, 334
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 5 cut(s) 68, 132, 160, 501, 561
BseGI GGATG 2 cut(s) 537, 822
BseLI CCNNNNNNNGG 1 cut(s) 427
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 9 cut(s) 49, 611, 620, 623, 626, 653, 711, 714, 723
BseX3I CGGCCG 2 cut(s) 468, 558
BseXI GCAGC 2 cut(s) 538, 541
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 4 cut(s) 87, 162, 503, 563
Bsh1285I CGRYCG 7 cut(s) 349, 411, 462, 471, 494, 561, 908
BshFI GGCC 7 cut(s) 73, 138, 222, 337, 457, 470, 560
BshVI ATCGAT 1 cut(s) 270
BsiEI CGRYCG 7 cut(s) 349, 411, 462, 471, 494, 561, 908
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 7 cut(s) 80, 315, 407, 436, 449, 458, 908
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 2 cut(s) 316, 450
BsmBI CGTCTC 1 cut(s) 450
BsmFI GGGAC 1 cut(s) 677
BsnI GGCC 7 cut(s) 73, 138, 222, 337, 457, 470, 560
Bso31I GGTCTC 1 cut(s) 316
Bsp1286I GDGCHC 2 cut(s) 156, 914
Bsp13I TCCGGA 1 cut(s) 314
Bsp143I GATC 5 cut(s) 267, 346, 363, 368, 888
BspANI GGCC 7 cut(s) 73, 138, 222, 337, 457, 470, 560
BspDI ATCGAT 1 cut(s) 270
BspEI TCCGGA 1 cut(s) 314
BspFNI CGCG 4 cut(s) 87, 162, 503, 563
BspLI GGNNCC 2 cut(s) 137, 370
BspPI GGATC 4 cut(s) 275, 363, 376, 896
BspQI GCTCTTC 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 316
BsrBI CCGCTC 1 cut(s) 886
BsrFI RCCGGY 3 cut(s) 79, 406, 457
BsrI ACTGG 1 cut(s) 188
BssAI RCCGGY 3 cut(s) 79, 406, 457
BssECI CCNNGG 5 cut(s) 68, 132, 160, 501, 561
BssMI GATC 5 cut(s) 267, 346, 363, 368, 888
BssNI GRCGYC 5 cut(s) 26, 108, 129, 201, 497
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 2 cut(s) 133, 334
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 2 cut(s) 219, 716
BstACI GRCGYC 5 cut(s) 26, 108, 129, 201, 497
BstAPI GCANNNNNTGC 1 cut(s) 817
BstC8I GCNNGC 2 cut(s) 429, 902
BstDEI CTNAG 1 cut(s) 835
BstDSI CCRYGG 3 cut(s) 160, 501, 561
BstF5I GGATG 2 cut(s) 537, 822
BstFNI CGCG 4 cut(s) 87, 162, 503, 563
BstH2I RGCGCY 1 cut(s) 512
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 5 cut(s) 270, 349, 366, 371, 891
BstMAI GTCTC 2 cut(s) 316, 450
BstMBI GATC 5 cut(s) 267, 346, 363, 368, 888
BstMCI CGRYCG 7 cut(s) 349, 411, 462, 471, 494, 561, 908
BstNI CCWGG 2 cut(s) 133, 334
BstSCI CCNGG 3 cut(s) 131, 332, 907
BstUI CGCG 4 cut(s) 87, 162, 503, 563
BstV1I GCAGC 2 cut(s) 538, 541
BstV2I GAAGAC 2 cut(s) 111, 239
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BstZI CGGCCG 2 cut(s) 468, 558
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 7 cut(s) 73, 138, 222, 337, 457, 470, 560
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 3 cut(s) 160, 501, 561
BtrI CACGTC 1 cut(s) 114
BtsCI GGATG 2 cut(s) 537, 822
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 1 cut(s) 260
Cac8I GCNNGC 2 cut(s) 429, 902
CciNI GCGGCCGC 1 cut(s) 558
CfoI GCGC 1 cut(s) 511
Cfr10I RCCGGY 3 cut(s) 79, 406, 457
Cfr13I GGNCC 4 cut(s) 72, 82, 136, 874
Cfr42I CCGCGG 3 cut(s) 163, 504, 564
ClaI ATCGAT 1 cut(s) 270
CpoI CGGWCCG 1 cut(s) 82
CseI GACGC 6 cut(s) 34, 116, 137, 209, 244, 486
Csp6I GTAC 2 cut(s) 289, 433
CspI CGGWCCG 1 cut(s) 82
CviAII CATG 2 cut(s) 76, 862
CviQI GTAC 2 cut(s) 289, 433
DdeI CTNAG 1 cut(s) 835
DpnI GATC 5 cut(s) 269, 348, 365, 370, 890
DpnII GATC 5 cut(s) 267, 346, 363, 368, 888
DrdI GACNNNNNNGTC 1 cut(s) 872
DriI GACNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 872
EaeI YGGCCR 3 cut(s) 220, 468, 558
EagI CGGCCG 2 cut(s) 468, 558
Eam1104I CTCTTC 2 cut(s) 219, 716
Eam1105I GACNNNNNGTC 1 cut(s) 112
EarI CTCTTC 2 cut(s) 219, 716
EciI GGCGGA 5 cut(s) 161, 532, 581, 659, 708
Ecl136II GAGCTC 1 cut(s) 154
EclXI CGGCCG 2 cut(s) 468, 558
Eco130I CCWWGG 1 cut(s) 68
Eco24I GRGCYC 2 cut(s) 156, 914
Eco31I GGTCTC 1 cut(s) 316
Eco47I GGWCC 2 cut(s) 82, 874
Eco52I CGGCCG 2 cut(s) 468, 558
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 131, 332
EcoT14I CCWWGG 1 cut(s) 68
EcoT38I GRGCYC 2 cut(s) 156, 914
ErhI CCWWGG 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 450
FaeI CATG 2 cut(s) 79, 865
FaiI YATR 4 cut(s) 77, 857, 863, 924
FaqI GGGAC 1 cut(s) 677
FatI CATG 2 cut(s) 75, 861
FauI CCCGC 1 cut(s) 432
FblI GTMKAC 1 cut(s) 116
FokI GGATG 2 cut(s) 544, 829
FriOI GRGCYC 2 cut(s) 156, 914
FspBI CTAG 2 cut(s) 69, 306
GlaI GCGC 1 cut(s) 510
GsuI CTGGAG 2 cut(s) 118, 902
HaeII RGCGCY 1 cut(s) 512
HaeIII GGCC 7 cut(s) 73, 138, 222, 337, 457, 470, 560
HapII CCGG 7 cut(s) 80, 315, 407, 436, 449, 458, 908
HgaI GACGC 6 cut(s) 34, 116, 137, 209, 244, 486
HhaI GCGC 1 cut(s) 511
Hin1I GRCGYC 5 cut(s) 26, 108, 129, 201, 497
Hin1II CATG 2 cut(s) 79, 865
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HincII GTYRAC 3 cut(s) 33, 117, 208
HindII GTYRAC 3 cut(s) 33, 117, 208
HinfI GANTC 5 cut(s) 17, 118, 262, 356, 841
HpaII CCGG 7 cut(s) 80, 315, 407, 436, 449, 458, 908
Hpy166II GTNNAC 3 cut(s) 33, 117, 208
Hpy188I TCNGA 5 cut(s) 267, 363, 368, 765, 846
Hpy188III TCNNGA 4 cut(s) 280, 298, 315, 379
Hpy8I GTNNAC 3 cut(s) 33, 117, 208
HpyAV CCTTC 4 cut(s) 295, 649, 707, 823
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 2 cut(s) 113, 147
HpyCH4V TGCA 3 cut(s) 253, 258, 820
HpyF3I CTNAG 1 cut(s) 835
HpySE526I ACGT 2 cut(s) 113, 147
Hsp92I GRCGYC 5 cut(s) 26, 108, 129, 201, 497
Hsp92II CATG 2 cut(s) 79, 865
HspAI GCGC 1 cut(s) 509
Kpn2I TCCGGA 1 cut(s) 314
KspI CCGCGG 3 cut(s) 163, 504, 564
Kzo9I GATC 5 cut(s) 267, 346, 363, 368, 888
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 2 cut(s) 99, 883
Lsp1109I GCAGC 2 cut(s) 538, 541
LweI GCATC 1 cut(s) 807
MaeI CTAG 2 cut(s) 69, 306
MaeII ACGT 2 cut(s) 113, 147
MaeIII GTNAC 2 cut(s) 143, 463
MalI GATC 5 cut(s) 269, 348, 365, 370, 890
MbiI CCGCTC 1 cut(s) 886
MboI GATC 5 cut(s) 267, 346, 363, 368, 888
MboII GAAGA 8 cut(s) 116, 206, 244, 295, 321, 334, 629, 733
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 2 cut(s) 156, 914
MluCI AATT 3 cut(s) 52, 325, 535
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 783
MroI TCCGGA 1 cut(s) 314
MslI CAYNNNNRTG 1 cut(s) 248
MspA1I CMGCKG 5 cut(s) 162, 427, 503, 563, 880
MspI CCGG 7 cut(s) 80, 315, 407, 436, 449, 458, 908
MspR9I CCNGG 3 cut(s) 133, 334, 909
MvaI CCWGG 2 cut(s) 133, 334
MvnI CGCG 4 cut(s) 87, 162, 503, 563
NciI CCSGG 1 cut(s) 909
NdeII GATC 5 cut(s) 267, 346, 363, 368, 888
NlaIII CATG 2 cut(s) 79, 865
NlaIV GGNNCC 2 cut(s) 137, 370
NmuCI GTSAC 1 cut(s) 463
NotI GCGGCCGC 1 cut(s) 558
OliI CACNNNNGTG 1 cut(s) 248
PciSI GCTCTTC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 5 cut(s) 201, 372, 468, 585, 600
PfeI GAWTC 4 cut(s) 17, 262, 356, 841
PflFI GACNNNGTC 2 cut(s) 28, 203
Ple19I CGATCG 1 cut(s) 349
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 131, 332
PspGI CCWGG 2 cut(s) 131, 332
PspN4I GGNNCC 2 cut(s) 137, 370
PspPI GGNCC 4 cut(s) 72, 82, 136, 874
PsuI RGATCY 1 cut(s) 368
PsyI GACNNNGTC 2 cut(s) 28, 203
PvuI CGATCG 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 2 cut(s) 290, 434
RsaNI GTAC 2 cut(s) 289, 433
RseI CAYNNNNRTG 1 cut(s) 248
Rsr2I CGGWCCG 1 cut(s) 82
RsrII CGGWCCG 1 cut(s) 82
SacI GAGCTC 1 cut(s) 156
SacII CCGCGG 3 cut(s) 163, 504, 564
SalI GTCGAC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 219
Sau3AI GATC 5 cut(s) 267, 346, 363, 368, 888
Sau96I GGNCC 4 cut(s) 72, 82, 136, 874
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 3 cut(s) 133, 334, 909
SduI GDGCHC 2 cut(s) 156, 914
SfaNI GCATC 1 cut(s) 807
Sfr303I CCGCGG 3 cut(s) 163, 504, 564
SgrBI CCGCGG 3 cut(s) 163, 504, 564
SinI GGWCC 2 cut(s) 82, 874
SmiMI CAYNNNNRTG 1 cut(s) 248
Sse9I AATT 3 cut(s) 52, 325, 535
SspMI CTAG 2 cut(s) 69, 306
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 131, 332, 907
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 2 cut(s) 116, 150
TaqI TCGA 6 cut(s) 116, 126, 150, 270, 297, 345
TasI AATT 3 cut(s) 52, 325, 535
TatI WGTACW 1 cut(s) 288
TauI GCSGC 9 cut(s) 141, 165, 406, 484, 506, 509, 560, 563, 566
TfiI GAWTC 4 cut(s) 17, 262, 356, 841
TscAI CASTG 1 cut(s) 260
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 2 cut(s) 551, 554
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 2 cut(s) 548, 850
TspGWI ACGGA 3 cut(s) 29, 645, 812
TspRI CASTG 1 cut(s) 260
Tth111I GACNNNGTC 2 cut(s) 28, 203
VpaK11BI GGWCC 2 cut(s) 82, 874
XmaJI CCTAGG 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 116
XspI CTAG 2 cut(s) 69, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.