Rorug04G0453000
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003314
Physical Location & Seq
Reverse (-)
60718801 .. 60732697
13897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0453000.1

Sequence Viewer

Length: 4266 bp
ATGGAGATGTTGGCTGCAGTAGGAATTAGGGATATGCTTGTTGCTATGTCCAGAAATCAAATAATGGCATCGCCAGCCTGGTTACCGCAGGATGTGCAGCCATCTGTATCTCAAGCCCCAGTTTCTGGTTCACCAGCAGGGGCTCCTTCAACTCCGACTGCAGCTCCACTTGCTTCAAGTGCGGGCACACCGTCATTCTCGTACAGTGTGCCTCCAAATGCAAATATCGCTTTTGGAACCTCTCAACAGCCATCAACTAGTCCTGGGACTAAGTTTAATCTCTCAGCATCTCCAATGGTTATTCAACCCCCAGTTCCTGGCTTGTCATCTGCTGCCAGTCCCTCTTTCTCATACAACATTCCAAAATCTAATTATCCCTTCCCTAATAATCAGCTGTTTCAATCTGGCATGCAGAATGTCTCACCTGCTATTGCACAAGAAACTGGGAATGCCTCATTGTCATCAACTAGCTCTCATTCTGGTTACTTGGCTGCTTCTACTTCTTCAAGTTCCACAATGGCTCTATCATCAGCTCCTAATGTGGGACCAACAACTTCATGGGTTCCCACGACCCCATCATTTAATATGACTCATGGAATGCCTGGAACTCCTGGTCCCTCTGGAACAGCCCACTCACTGCAAATGTCCTTTAATCTGACTGCACGATCTGCACCTGTTGATTCTTCTTCTATAGCCCTTAGACCTAGCTTGCAAACACCTTCTGCTGGATCATCTGCAGTTCAGCCACAAGCAGGTGTTCCCTACCCATCTTTACCTGCTATGGCTGCTAACCCCCACGGAGTCTGGTTGCAGTCCCCACAGATGGAAGGCGTACCTAGGTCACCATTTCAGGCATATCCTGCTGCTTTTCCCGGTCCCTTTCCTTTGCCTACACGTGTTATGCCTCCCCCTTCTGTTCTTATACCTGATTCTCAGCCTCCTGGTGTCACTCCTGTGGGAAATACGGTAGCAACATCCTTGTCTTCCAGTTCTCGTCATCAACTTGCACCTTCTTCATGGATGCAGACAGAATTACCTCATCCTGGTATTGATGACAGGAAACATGCCCTTGAGGCAGGCAACCAACATATAGCTGCTGTCAATCAACAATTGGATGCTTGGACTGCCCACAAGGCAGAGACAGGAGTTGTATACTATTATAATGCTGTGACTGGTGAATCAACTTATGAGAAGCCTCCTGGATTTAAGGAGGAGCCTGATAAGGTCTCTGTGCAGCCAGTTCCAGTTTCAACGGTGAATTTGTCCGGAACTGATTGGGTATTGGTTACAACAAGTGATGGGAAAAAGTTTTACCATAATAGCAAAACCAAGGTTAGCAGCTGGCAGATCCCAAATGAAGTGATAGAAATGAGAAAGAAGCAGGATGGTGACACGCCAAAAGAACATCCAGAGTCAGTGCCAAATAATAGTCAAATGGTTGAAAAGGAATCTGCTCCAATCAGTTTGAGTGCTCCGGCCATTAGCACGGGTGGTCGTGAAGCCATGGCTTACAAGGCCTCAACTCTGCAGGGATCATCATCTGCACTCGACCTGATTAAAAAGAAGTTGCAGGATTCTGGAGCTCCTGTTACTTCATCACCAGTTTCAGGACCTTCAGAGTTAAATGGCTCAAGAGGAGTTGAGAGTACACCTAAGGGCCAGCAGAGTGAGAATAGCAAGGATAAGCTAAATGACACTAATGGGGATGGTAACATGTCTGACTCCTCATCAGATTCAGAGGATGCAGATAGTGGGCCAACAAAAGAGGAGGGTATTATTCAATTCAAGGAGATGCTCAAAGAACGGGGAGTGGCACCATTTTCAAAGTGGGAGAAGGAACTGCCAAAGATAGTGTTTGATCCACGATTTAAGGCCATTCCAAGTTATTCAAGGAGAGCCTTGTTTGAGCACTATGTTAAGACACGTGCAGAGGAGGAACGCAAGGAGAAACGAGCAGCTCAGAAGGCTGCAATAGAGGCATTTAAGCAGTTACTTGATGAAGCAGTGGAGGATATTGATGATACCACTGATTACCACAGTTTCAGAAAGAAATGGGGCAATGATCCACGCTTTGAGAATTTGGACCGCAAGGATCGAGAACATTTGTTGAATGAAAGAGTCCTTCCATTGAAGAAGGCTGCTGAAGAAAAGGCTGAAGCAGTGCGTGCTGCTGCTGCAACTAGTTTTAAGTGCATGCTTCAAGAAAAAGGAGATATTACAGTTAATTCCCGTTGGTCCAGGGTGAAAGATAGTCTGCGGAATGACCCAAGGTACAGATCTGTTAAGCATGAGGATAGGGAAGTTTTATTCAACAAGTACATATCAGATCTCAAAGCCGTGGAAGAGGAAGCAGAACGAGAGGCAAAAGCTAAAAGGGATGAGCAGGATAAGTTAAGGGAAAGAGAGCGAGAACTACGCAAGCGGAAGGAAAGAGAAGAACAAGAAACAGAGAGGGTGCGATTGAAAGTTCGCAGGAAGGAGGCAGTGTCTTCTTTTCAAGCTTTACTTGTGGAAACAATTAAAGATCCTCAGGCATCTTGGACAGAATCTAAGCCCAAGTTGGAGAAGGACCCGCAAAGGCGTGCAGCCAACCCTGATTTAAATTCATCTGACATGGAAAAGCTCTTCCGCGACCACATAAAGATGCTGCATGAGCGATGTGCACATGAGTTTAGAGCCCTGTTGGCTGAAGTGTTGACTACAGAAGCAGCCTCCCAAGAGACAGAGGATGGAAAAACAGTTCTTAACTCATGGTCAACAGCTAAACGTTTTCTAAAGTCTGATCCCAGATATAACAAGATGCCACGAAAAGATAGGGAAGTCGTGTGGCACCGATATGCCGAGGAGATGCTGCGGAAGCAAAAGTCATCACTTGATCATAGGGAAGACAAGAAATCAGATGCTAAAAGCAGAAGCTCTGCCGATGCTGGAAGGACCACCTTCGGATCAAGGGGTGCCCATGACCGTAGAGGAATCGGACGTCATATTCTCCGCACCTTTGAGAGGCTCGAGGACCTCGCCACCGCGGTTCAGGATTGTAATATACTTGAGTTTCATGACAGTGGGGGCTATATGGCAAACTATTCAGGAAAAGGAGCCCCTTCGAATGGGTCTGTCTATGTTTGCAACTTGCCGGAGGGGACTGATGAGAATATGCTGGCCGAATATTTCGGTACCATCGGGTTGTTGAAGAAAGACAAGCGAACAGGTGGACCAAAAATTTGGTTGTACAGAGACAAAGTGACAGATGAACCAAAGGGAGATGCTACTGTGACATATGAGGATCCACATGCTGCGTTTGCAGCTGTTGAATGGTTTAACGACAAGGAGTTTCATGGTAATGTGATCGGGGTTCATATAGCAGAGTCGAAAAGAGATGACCAGACATATAACCCTGGGGTTGATCTAAGCTCTACTGGCGGTGATCCAATTTATGGCGGAGTAGAGGAAAATGCTGAGGACATGAATGGGGGTGGCGGTAAAGGCCGGGGTGATGTTCCTGGGAAAGCATGGCAACAAGATGGAGACTGGACGTGTCCGAATACAAGTTGTGGCAATGTCAACTTTGCATTCCGTGGTGTGTGCAATCGCTGTGGAAGTGCTCGACCAACTGGTGCTTCTGGGGGTGGGGCAGGGGGTGGTGGTCGTGGCAGGGGCCGCGGTGTTGACTCCGGGGGGCGTGGTGGTCCTGTTGGTGCTCCTACAGGGGGACTCTTTGGTCCAAACGATTGGCCTTGTCCAATGTGTGGCAACATTAACTGGGCAAAGCGTACAAAATGCAATATATGCAACACAAATAAACCTGGGCACAATGAGGGTGGTGTAAGAGGAGGGCGTGGTGGTGGTTACAAAGAACTTGATGAAGAAGAACTGGAGGAAATCAAGCGACGTCGGCGAGAGGCCGAAGAAGATGATGGAGAGATGTATGATGAGTTTGGCAACCTGAAGAAAAAATTTCGAGCTAAAACATCACAGCAAGCTGAGACTGGACGGGCTCTTCCAGGTGCTGGGCGTGCTGGATGGGAGGTTGAGGAAATAGGTGTTGTTGATAGAGATGGCAGAGAAAGAAATAGAGATAGAGGAAGGGAACGTGATGATAGAGCAGGCAGCAAGAACAGGGAAAGAGATGATAGGGATAGGCGTCGCAGTCGGAGCAGAGAAAGGGATAGGGGGAGAGATCGACCTCGAGATTATGATCGGGAGAAAGAATATGGGCGGGAGAGGGACCGGGATAGGGATAGGGATCGGGGCAGGCACCGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

1421

Amino Acids

156.21

Weight (kDa)

8.16

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WW PF00397 373 - 399 1.1e-07 WW domain
WW_TCERG1 PF23517 414 - 456 4.8e-09 TCERG1 WW domain
WW PF00397 424 - 451 2.1e-06 WW domain
FF PF01846 594 - 638 4.2e-12 FF domain
FF PF01846 657 - 705 1.7e-08 FF domain
FF PF01846 727 - 773 6.7e-12 FF domain
FF PF01846 827 - 879 2.4e-06 FF domain
RRM_1 PF00076 1039 - 1116 9.4e-07 RNA recognition motif
Zn_ribbon_RanBP PF00641 1174 - 1203 8.7e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1161
AarI CACCTGC 2 cut(s) 433, 743
AasI GACNNNNNNGTC 1 cut(s) 3717
AatII GACGTC 2 cut(s) 2983, 3892
Acc36I ACCTGC 3 cut(s) 433, 743, 784
Acc65I GGTACC 1 cut(s) 3173
AccB1I GGYRCC 5 cut(s) 1813, 2829, 2954, 3173, 4254
AccB7I CCANNNNNTGG 5 cut(s) 125, 317, 3434, 3746, 4007
AccI GTMKAC 1 cut(s) 1152
AccII CGCG 3 cut(s) 2631, 3026, 3660
AccIII TCCGGA 1 cut(s) 1265
AclI AACGTT 1 cut(s) 2767
AcoI YGGCCR 2 cut(s) 1476, 3159
AcsI RAATTY 5 cut(s) 1258, 2077, 2602, 3219, 3953
AcuI CTGAAG 5 cut(s) 1599, 2163, 2175, 2709, 3965
AcvI CACGTG 2 cut(s) 896, 1925
AcyI GRCGYC 3 cut(s) 2980, 3889, 4141
AfaI GTAC 8 cut(s) 203, 834, 1648, 2273, 2318, 3175, 3230, 3772
AflIII ACRYGT 5 cut(s) 893, 895, 1713, 1922, 3533
AhlI ACTAGT 2 cut(s) 257, 2180
AjiI CACGTC 1 cut(s) 3534
AjuI GAANNNNNNNTTGG 2 cut(s) 3601, 3633
AleI CACNNNNGTG 1 cut(s) 953
AloI GAACNNNNNNTCC 4 cut(s) 598, 630, 2724, 2756
Alw21I GWGCWC 6 cut(s) 1474, 1585, 1911, 2665, 3604, 3700
Alw26I GTCTC 7 cut(s) 424, 1133, 1231, 2714, 3228, 3519, 3977
Alw44I GTGCAC 1 cut(s) 2661
AlwNI CAGNNNCTG 3 cut(s) 125, 317, 4007
Ama87I CYCGRG 2 cut(s) 3008, 4185
Aor13HI TCCGGA 1 cut(s) 1265
ApaLI GTGCAC 1 cut(s) 2661
ApoI RAATTY 5 cut(s) 1258, 2077, 2602, 3219, 3953
ArsI GACNNNNNNTTYG 2 cut(s) 3204, 3236
Asp718I GGTACC 1 cut(s) 3173
AspA2I CCTAGG 1 cut(s) 836
AsuC2I CCSGG 4 cut(s) 873, 3488, 3673, 4229
AsuII TTCGAA 1 cut(s) 3104
AvaI CYCGRG 2 cut(s) 3008, 4185
AvrII CCTAGG 1 cut(s) 836
AxyI CCTNAGG 2 cut(s) 1653, 2529
BaeGI GKGCMC 4 cut(s) 188, 2665, 2959, 3810
BamHI GGATCC 1 cut(s) 3283
BanI GGYRCC 5 cut(s) 1813, 2829, 2954, 3173, 4254
BanII GRGCYC 5 cut(s) 145, 1585, 2680, 3100, 3997
BbrPI CACGTG 2 cut(s) 896, 1925
BbsI GAAGAC 3 cut(s) 975, 2481, 2892
Bbv12I GWGCWC 6 cut(s) 1474, 1585, 1911, 2665, 3604, 3700
BbvCI CCTCAGC 1 cut(s) 3456
BceAI ACGGC 1 cut(s) 2321
BclI TGATCA 1 cut(s) 2875
BcnI CCSGG 4 cut(s) 873, 3488, 3673, 4229
BcoDI GTCTC 7 cut(s) 424, 1133, 1231, 2714, 3228, 3519, 3977
BcuI ACTAGT 2 cut(s) 257, 2180
BfaI CTAG 5 cut(s) 258, 468, 705, 837, 2181
BfmI CTRYAG 7 cut(s) 15, 159, 690, 735, 1526, 2700, 3702
BfuAI ACCTGC 3 cut(s) 433, 743, 784
BglI GCCNNNNNGGC 3 cut(s) 1073, 1133, 2684
BglII AGATCT 2 cut(s) 2276, 2326
BlnI CCTAGG 1 cut(s) 836
BmeT110I CYCGRG 2 cut(s) 3008, 4185
BmgBI CACGTC 1 cut(s) 3534
BmrI ACTGGG 4 cut(s) 113, 305, 453, 3769
BmuI ACTGGG 4 cut(s) 113, 305, 453, 3769
BpiI GAAGAC 3 cut(s) 975, 2481, 2892
BpmI CTGGAG 2 cut(s) 1599, 3893
Bpu10I CCTNAGC 1 cut(s) 3456
Bpu14I TTCGAA 1 cut(s) 3104
BpuEI CTTGAG 4 cut(s) 96, 1091, 1615, 3068
BpuMI CCSGG 4 cut(s) 873, 3488, 3673, 4229
BsaAI YACGTR 2 cut(s) 896, 1925
BsaBI GATNNNNATC 3 cut(s) 1537, 4194, 4242
BsaHI GRCGYC 3 cut(s) 2980, 3889, 4141
BsaI GGTCTC 1 cut(s) 1231
BsaWI WCCGGW 1 cut(s) 1265
BsaXI ACNNNNNCTCC 6 cut(s) 148, 178, 1572, 1602, 2471, 2501
Bse21I CCTNAGG 2 cut(s) 1653, 2529
Bse3DI GCAATG 2 cut(s) 2065, 3562
Bse8I GATNNNNATC 3 cut(s) 1537, 4194, 4242
BseAI TCCGGA 1 cut(s) 1265
BseJI GATNNNNATC 3 cut(s) 1537, 4194, 4242
BseMI GCAATG 2 cut(s) 2065, 3562
BseMII CTCAG 6 cut(s) 297, 947, 1973, 2543, 3447, 3972
BseRI GAGGAG 7 cut(s) 1226, 1650, 1714, 1781, 1946, 2858, 3843
BseSI GKGCMC 4 cut(s) 188, 2665, 2959, 3810
BseYI CCCAGC 1 cut(s) 4007
BsgI GTGCAG 7 cut(s) 116, 645, 654, 1253, 1527, 1947, 2604
Bsh1236I CGCG 3 cut(s) 2631, 3026, 3660
BshNI GGYRCC 5 cut(s) 1813, 2829, 2954, 3173, 4254
BsiHKAI GWGCWC 6 cut(s) 1474, 1585, 1911, 2665, 3604, 3700
BsiHKCI CYCGRG 2 cut(s) 3008, 4185
BsiSI CCGG 7 cut(s) 873, 1266, 1475, 3134, 3487, 3672, 4228
BslFI GGGAC 9 cut(s) 280, 324, 558, 600, 799, 861, 3154, 3723, 4238
BsmAI GTCTC 7 cut(s) 424, 1133, 1231, 2714, 3228, 3519, 3977
BsmFI GGGAC 9 cut(s) 280, 324, 558, 600, 799, 861, 3154, 3723, 4238
BsmI GAATGC 3 cut(s) 454, 603, 3569
Bso31I GGTCTC 1 cut(s) 1231
BsoBI CYCGRG 2 cut(s) 3008, 4185
Bsp119I TTCGAA 1 cut(s) 3104
Bsp13I TCCGGA 1 cut(s) 1265
Bsp1407I TGTACA 1 cut(s) 3228
Bsp19I CCATGG 1 cut(s) 1503
BspCNI CTCAG 6 cut(s) 296, 946, 1972, 2542, 3448, 3973
BspEI TCCGGA 1 cut(s) 1265
BspFNI CGCG 3 cut(s) 2631, 3026, 3660
BspHI TCATGA 1 cut(s) 3055
BspMAI CTGCAG 4 cut(s) 19, 163, 739, 1530
BspMI ACCTGC 3 cut(s) 433, 743, 784
BspQI GCTCTTC 2 cut(s) 2630, 4002
BspT104I TTCGAA 1 cut(s) 3104
BspT107I GGYRCC 5 cut(s) 1813, 2829, 2954, 3173, 4254
BspTNI GGTCTC 1 cut(s) 1231
BsrDI GCAATG 2 cut(s) 2065, 3562
BsrGI TGTACA 1 cut(s) 3228
BssNAI GTATAC 1 cut(s) 1153
BssNI GRCGYC 3 cut(s) 2980, 3889, 4141
BssT1I CCWWGG 4 cut(s) 836, 1329, 1503, 2267
Bst1107I GTATAC 1 cut(s) 1153
Bst6I CTCTTC 3 cut(s) 2337, 2630, 4002
BstACI GRCGYC 3 cut(s) 2980, 3889, 4141
BstAPI GCANNNNNTGC 5 cut(s) 94, 668, 860, 2165, 3786
BstAUI TGTACA 1 cut(s) 3228
BstBAI YACGTR 2 cut(s) 896, 1925
BstBI TTCGAA 1 cut(s) 3104
BstDSI CCRYGG 6 cut(s) 796, 1503, 2337, 3024, 3574, 3658
BstEII GGTNACC 2 cut(s) 81, 840
BstENI CCTNNNNNAGG 1 cut(s) 3001
BstFNI CGCG 3 cut(s) 2631, 3026, 3660
BstMAI GTCTC 7 cut(s) 424, 1133, 1231, 2714, 3228, 3519, 3977
BstNSI RCATGY 5 cut(s) 412, 1067, 1717, 2197, 3293
BstPI GGTNACC 2 cut(s) 81, 840
BstSFI CTRYAG 7 cut(s) 15, 159, 690, 735, 1526, 2700, 3702
BstSLI GKGCMC 4 cut(s) 188, 2665, 2959, 3810
BstUI CGCG 3 cut(s) 2631, 3026, 3660
BstV2I GAAGAC 3 cut(s) 975, 2481, 2892
BstX2I RGATCY 5 cut(s) 1347, 2276, 2326, 2524, 3283
BstXI CCANNNNNNTGG 2 cut(s) 3222, 3729
BstYI RGATCY 5 cut(s) 1347, 2276, 2326, 2524, 3283
BstZ17I GTATAC 1 cut(s) 1153
Bsu36I CCTNAGG 2 cut(s) 1653, 2529
BtgI CCRYGG 6 cut(s) 796, 1503, 2337, 3024, 3574, 3658
BtgZI GCGATG 2 cut(s) 54, 2671
BtrI CACGTC 1 cut(s) 3534
BtsI GCAGTG 4 cut(s) 635, 2010, 2166, 2490
BtsIMutI CAGTG 8 cut(s) 211, 635, 1422, 2010, 2025, 2166, 2490, 3067
BveI ACCTGC 3 cut(s) 433, 743, 784
CaiI CAGNNNCTG 3 cut(s) 125, 317, 4007
CciI TCATGA 1 cut(s) 3055
Cfr42I CCGCGG 2 cut(s) 3027, 3661
CseI GACGC 1 cut(s) 4130
Csp6I GTAC 8 cut(s) 202, 833, 1647, 2272, 2317, 3174, 3229, 3771
CspCI CAANNNNNGTGG 4 cut(s) 3574, 3609, 3799, 3834
CviQI GTAC 8 cut(s) 202, 833, 1647, 2272, 2317, 3174, 3229, 3771
DraI TTTAAA 1 cut(s) 2601
DrdI GACNNNNNNGTC 1 cut(s) 3717
DseDI GACNNNNNNGTC 1 cut(s) 3717
EaeI YGGCCR 2 cut(s) 1476, 3159
Eam1104I CTCTTC 3 cut(s) 2337, 2630, 4002
EarI CTCTTC 3 cut(s) 2337, 2630, 4002
EciI GGCGGA 1 cut(s) 3453
Ecl136II GAGCTC 1 cut(s) 1583
Eco130I CCWWGG 4 cut(s) 836, 1329, 1503, 2267
Eco147I AGGCCT 1 cut(s) 1517
Eco24I GRGCYC 5 cut(s) 145, 1585, 2680, 3100, 3997
Eco31I GGTCTC 1 cut(s) 1231
Eco53kI GAGCTC 1 cut(s) 1583
Eco57I CTGAAG 5 cut(s) 1599, 2163, 2175, 2709, 3965
Eco72I CACGTG 2 cut(s) 896, 1925
Eco81I CCTNAGG 2 cut(s) 1653, 2529
Eco88I CYCGRG 2 cut(s) 3008, 4185
Eco91I GGTNACC 2 cut(s) 81, 840
EcoICRI GAGCTC 1 cut(s) 1583
EcoNI CCTNNNNNAGG 1 cut(s) 3001
EcoO109I RGGNCCY 3 cut(s) 1610, 2569, 3013
EcoO65I GGTNACC 2 cut(s) 81, 840
EcoT14I CCWWGG 4 cut(s) 836, 1329, 1503, 2267
EcoT38I GRGCYC 5 cut(s) 145, 1585, 2680, 3100, 3997
ErhI CCWWGG 4 cut(s) 836, 1329, 1503, 2267
FalI AAGNNNNNCTT 2 cut(s) 2490, 2522
FaqI GGGAC 9 cut(s) 280, 324, 558, 600, 799, 861, 3154, 3723, 4238
FauI CCCGC 3 cut(s) 175, 2580, 4209
FauNDI CATATG 1 cut(s) 3277
FbaI TGATCA 1 cut(s) 2875
FblI GTMKAC 1 cut(s) 1152
FriOI GRGCYC 5 cut(s) 145, 1585, 2680, 3100, 3997
FspBI CTAG 5 cut(s) 258, 468, 705, 837, 2181
GsaI CCCAGC 1 cut(s) 4011
GsuI CTGGAG 2 cut(s) 1599, 3893
HapII CCGG 7 cut(s) 873, 1266, 1475, 3134, 3487, 3672, 4228
HgaI GACGC 1 cut(s) 4130
Hin1I GRCGYC 3 cut(s) 2980, 3889, 4141
HincII GTYRAC 4 cut(s) 2697, 2757, 3562, 3667
HindII GTYRAC 4 cut(s) 2697, 2757, 3562, 3667
HindIII AAGCTT 1 cut(s) 2499
HpaII CCGG 7 cut(s) 873, 1266, 1475, 3134, 3487, 3672, 4228
Hpy166II GTNNAC 9 cut(s) 131, 1153, 1649, 2663, 2697, 2757, 3212, 3562, 3667
Hpy8I GTNNAC 9 cut(s) 131, 1153, 1649, 2663, 2697, 2757, 3212, 3562, 3667
Hpy99I CGWCG 3 cut(s) 3891, 3894, 4146
HpyCH4IV ACGT 7 cut(s) 895, 1924, 2767, 2980, 3533, 3889, 4090
HpySE526I ACGT 7 cut(s) 895, 1924, 2767, 2980, 3533, 3889, 4090
Hsp92I GRCGYC 3 cut(s) 2980, 3889, 4141
Kpn2I TCCGGA 1 cut(s) 1265
KpnI GGTACC 1 cut(s) 3177
Ksp22I TGATCA 1 cut(s) 2875
KspI CCGCGG 2 cut(s) 3027, 3661
LguI GCTCTTC 2 cut(s) 2630, 4002
MaeI CTAG 5 cut(s) 258, 468, 705, 837, 2181
MaeII ACGT 7 cut(s) 895, 1924, 2767, 2980, 3533, 3889, 4090
MfeI CAATTG 1 cut(s) 1109
MflI RGATCY 5 cut(s) 1347, 2276, 2326, 2524, 3283
MlyI GAGTC 8 cut(s) 583, 810, 1421, 1715, 2127, 3374, 3662, 3705
MmeI TCCRAC 3 cut(s) 179, 2541, 4130
MroI TCCGGA 1 cut(s) 1265
MslI CAYNNNNRTG 5 cut(s) 953, 2642, 2835, 3060, 3339
MspA1I CMGCKG 5 cut(s) 394, 1341, 3026, 3305, 3660
MspI CCGG 7 cut(s) 873, 1266, 1475, 3134, 3487, 3672, 4228
MunI CAATTG 1 cut(s) 1109
Mva1269I GAATGC 3 cut(s) 454, 603, 3569
MvnI CGCG 3 cut(s) 2631, 3026, 3660
NciI CCSGG 4 cut(s) 873, 3488, 3673, 4229
NcoI CCATGG 1 cut(s) 1503
NdeI CATATG 1 cut(s) 3277
NmeAIII GCCGAG 1 cut(s) 2866
NmuCI GTSAC 6 cut(s) 840, 946, 1168, 1388, 3241, 3271
NspI RCATGY 5 cut(s) 412, 1067, 1717, 2197, 3293
NspV TTCGAA 1 cut(s) 3104
OliI CACNNNNGTG 1 cut(s) 953
PaeI GCATGC 2 cut(s) 412, 2197
PaeR7I CTCGAG 2 cut(s) 3008, 4185
PagI TCATGA 1 cut(s) 3055
PaqCI CACCTGC 2 cut(s) 433, 743
PasI CCCWGGG 1 cut(s) 3395
PceI AGGCCT 1 cut(s) 1517
PciI ACATGT 1 cut(s) 1713
PciSI GCTCTTC 2 cut(s) 2630, 4002
PctI GAATGC 3 cut(s) 454, 603, 3569
PfeI GAWTC 8 cut(s) 680, 929, 1178, 1448, 1574, 1733, 2546, 2973
PflMI CCANNNNNTGG 5 cut(s) 125, 317, 3434, 3746, 4007
PfoI TCCNGGA 1 cut(s) 1198
PleI GAGTC 8 cut(s) 583, 809, 1420, 1715, 2126, 3373, 3662, 3705
PmaCI CACGTG 2 cut(s) 896, 1925
PmlI CACGTG 2 cut(s) 896, 1925
PpsI GAGTC 8 cut(s) 583, 809, 1420, 1715, 2126, 3373, 3662, 3705
Ppu21I YACGTR 2 cut(s) 896, 1925
PpuMI RGGWCCY 3 cut(s) 1610, 2569, 3013
PscI ACATGT 1 cut(s) 1713
PsiI TTATAA 1 cut(s) 1161
Psp124BI GAGCTC 1 cut(s) 1585
Psp1406I AACGTT 1 cut(s) 2767
Psp5II RGGWCCY 3 cut(s) 1610, 2569, 3013
PspCI CACGTG 2 cut(s) 896, 1925
PspEI GGTNACC 2 cut(s) 81, 840
PspFI CCCAGC 1 cut(s) 4007
PspPPI RGGWCCY 3 cut(s) 1610, 2569, 3013
PspXI VCTCGAGB 1 cut(s) 3008
PstI CTGCAG 4 cut(s) 19, 163, 739, 1530
PstNI CAGNNNCTG 3 cut(s) 125, 317, 4007
PsuI RGATCY 5 cut(s) 1347, 2276, 2326, 2524, 3283
PvuII CAGCTG 3 cut(s) 394, 1341, 3305
RsaI GTAC 8 cut(s) 203, 834, 1648, 2273, 2318, 3175, 3230, 3772
RsaNI GTAC 8 cut(s) 202, 833, 1647, 2272, 2317, 3174, 3229, 3771
RseI CAYNNNNRTG 5 cut(s) 953, 2642, 2835, 3060, 3339
SacI GAGCTC 1 cut(s) 1585
SacII CCGCGG 2 cut(s) 3027, 3661
SapI GCTCTTC 2 cut(s) 2630, 4002
SchI GAGTC 8 cut(s) 583, 810, 1421, 1715, 2127, 3374, 3662, 3705
SfcI CTRYAG 7 cut(s) 15, 159, 690, 735, 1526, 2700, 3702
Sfr274I CTCGAG 2 cut(s) 3008, 4185
Sfr303I CCGCGG 2 cut(s) 3027, 3661
SfuI TTCGAA 1 cut(s) 3104
SgrBI CCGCGG 2 cut(s) 3027, 3661
SlaI CTCGAG 2 cut(s) 3008, 4185
SmiI ATTTAAAT 1 cut(s) 2601
SmiMI CAYNNNNRTG 5 cut(s) 953, 2642, 2835, 3060, 3339
SmlI CTYRAG 6 cut(s) 111, 1070, 1630, 3008, 3047, 4185
SmoI CTYRAG 6 cut(s) 111, 1070, 1630, 3008, 3047, 4185
SpeI ACTAGT 2 cut(s) 257, 2180
SphI GCATGC 2 cut(s) 412, 2197
SseBI AGGCCT 1 cut(s) 1517
SspI AATATT 1 cut(s) 3167
SspMI CTAG 5 cut(s) 258, 468, 705, 837, 2181
SstI GAGCTC 1 cut(s) 1585
StuI AGGCCT 1 cut(s) 1517
StyI CCWWGG 4 cut(s) 836, 1329, 1503, 2267
SwaI ATTTAAAT 1 cut(s) 2601
TaiI ACGT 7 cut(s) 898, 1927, 2770, 2983, 3536, 3892, 4093
TaqI TCGA 9 cut(s) 1548, 2095, 3009, 3104, 3368, 3604, 3958, 4180, 4186
TatI WGTACW 3 cut(s) 1646, 2316, 3228
TauI GCSGC 1 cut(s) 3660
TfiI GAWTC 8 cut(s) 680, 929, 1178, 1448, 1574, 1733, 2546, 2973
TscAI CASTG 8 cut(s) 211, 642, 1422, 2010, 2032, 2166, 2490, 3067
TseFI GTSAC 6 cut(s) 840, 946, 1168, 1388, 3241, 3271
Tsp45I GTSAC 6 cut(s) 840, 946, 1168, 1388, 3241, 3271
TspGWI ACGGA 2 cut(s) 813, 3563
TspRI CASTG 8 cut(s) 211, 642, 1422, 2010, 2032, 2166, 2490, 3067
Van91I CCANNNNNTGG 5 cut(s) 125, 317, 3434, 3746, 4007
VneI GTGCAC 1 cut(s) 2661
XagI CCTNNNNNAGG 1 cut(s) 3001
XapI RAATTY 5 cut(s) 1258, 2077, 2602, 3219, 3953
XceI RCATGY 5 cut(s) 412, 1067, 1717, 2197, 3293
XcmI CCANNNNNNNNNTGG 2 cut(s) 555, 1824
XhoI CTCGAG 2 cut(s) 3008, 4185
XmaJI CCTAGG 1 cut(s) 836
XmiI GTMKAC 1 cut(s) 1152
XspI CTAG 5 cut(s) 258, 468, 705, 837, 2181
ZraI GACGTC 2 cut(s) 2981, 3890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.