Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000109.1

Orthogroup ID

OG0003314

Physical Location & Seq

Genomic Coordinates Forward (+)

47449 .. 50963

Gene Structure 3515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000109.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgacatcgacaaagcagcttcacgcgctcatcccggcgacctgcctcctacactcgcggctcattcggccggcgctctcctcccaccgacgcgacctgtctcttaacacctctccctctctctctcacaaaaccaaccacaaccccaaaccccacaatttcacagctccgttcccgatgggcgacctaacggaatcctcgctcacgccgtcaacgaccacccccaattcctcctcaaaccctaggcccatgcccgtccgcgaggactgctggagcgaagacgccacctcgactctcatcgactcctggggcagccgttacctcgagctcaaccgcggcaacctccgccagaaggactggcaggaggtcgccgacgccgtcaacgccctccacggccacaccaagaagacgcaccgtacggacgtccagtgcaagaatcgaattgataccatcaagaagaagtacaaggtcgagaaggctagggtttctggaggattgacctcttcctggccttttttcgatcgcctcgacgctctcatcggatctaacgtcaagaagccctcgccgtcgtcgctctcgccttcgccgccggtcgcggttccgctgccgctggcgtaccggaagccttcgccggcgaggccggtcgtgacggccgtggctctgccgcagaagaggtcggcgtccgcggcggcgatgaacgaggggttcttcaggatgaattactcggcggtcgctgctgcggcggcggcggagaacgacgacgacgacgaagaggatgaggaggatgaggaagataacgacgacggggatgaggaggcggaggtggagagggagagggagagagacagcgacggcgagattggaggcggcggaggagaagggttgaagagattggcgagggcaatagagaggtttggggaggtgtatcagagagtggaggctgagaagttgaggcagatggtggagttggaaaagcagagaatgcagtttgctaaggacttggaggttcagagaatgaggatgttcatggacacacaggtccagctggagagaatcaagcacggcaagcgacccggctctaatgatatttatagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

365

Amino Acids

40.79

Weight (kDa)

6.25

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58630 AT3G58630
fragaria_vesca	FvH4_3g07760 FvH4_3g07760 FvH4_3g07760 FvH4_3g07760
malus_domestica	MD05G1300700.v1.1 MD10G1279600.v1.1
prunus_persica	Prupe.3G118000_v2.0.a1 Prupe.3G118000_v2.0.a1 Prupe.3G118000_v2.0.a1 Prupe.3G118000_v2.0.a1 Prupe.3G118000_v2.0.a1 Prupe.3G118000_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1 Prupe.4G061800_v2.0.a1
pyrus_communis	pycom05g27860 pycom10g23340
rosa_chinensis	RchiOBHm_Chr5g0010841
rosa_laevigata	RLG00000031785
rosa_multiflora	Rmu_sc0000109.1_g000012
rosa_roxburghii	Rroxscaffold_1G00065550
rosa_rugosa	Rorug04G0452800 Rorug04G0452900 Rorug04G0453000
rosa_samantha	Rh5BG079900 Rh5CG092500 Rh5DG080000
rosa_wichuraiana	Rw0G017950 Rw0G022230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1037
AatII	GACGTC	1 cut(s)	426
Acc36I	ACCTGC	1 cut(s)	50
AccII	CGCG	7 cut(s)	26, 58, 93, 261, 336, 596, 686
AclWI	GGATC	1 cut(s)	550
AcoI	YGGCCR	3 cut(s)	68, 394, 651
AcuI	CTGAAG	1 cut(s)	694
AcyI	GRCGYC	4 cut(s)	282, 375, 423, 680
AfaI	GTAC	3 cut(s)	418, 464, 617
AfiI	CCNNNNNNNGG	2 cut(s)	352, 507
AgsI	TTSAA	1 cut(s)	886
AjnI	CCWGG	2 cut(s)	305, 506
AluBI	AGCT	5 cut(s)	19, 167, 328, 1045, 1095
AluI	AGCT	5 cut(s)	19, 167, 328, 1045, 1095
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	105, 837
AlwI	GGATC	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	6 cut(s)	68, 245, 394, 509, 638, 651
ApeKI	GCWGC	5 cut(s)	16, 312, 604, 734, 737
AspA2I	CCTAGG	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	28, 76
AspS9I	GGNCC	2 cut(s)	246, 1039
AsuC2I	CCSGG	2 cut(s)	35, 1074
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	1039
AvrII	CCTAGG	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	330
BbsI	GAAGAC	2 cut(s)	285, 413
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	5 cut(s)	28, 324, 591, 721, 724
BccI	CCATC	3 cut(s)	172, 458, 952
BceAI	ACGGC	9 cut(s)	193, 300, 362, 409, 550, 638, 666, 868, 1078
BciT130I	CCWGG	2 cut(s)	307, 508
BcnI	CCSGG	2 cut(s)	35, 1074
BcoDI	GTCTC	2 cut(s)	105, 837
BfaI	CTAG	3 cut(s)	243, 480, 1096
BfoI	RGCGCY	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	50
BglI	GCCNNNNNGGC	1 cut(s)	637
BlnI	CCTAGG	1 cut(s)	242
Bme1390I	CCNGG	4 cut(s)	35, 307, 508, 1074
Bme18I	GGWCC	1 cut(s)	1039
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	246, 1039
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	4 cut(s)	35, 307, 508, 1074
BpiI	GAAGAC	2 cut(s)	285, 413
BpmI	CTGGAG	3 cut(s)	292, 510, 1067
Bpu10I	CCTNAGC	1 cut(s)	993
BpuMI	CCSGG	2 cut(s)	35, 1074
BsaHI	GRCGYC	4 cut(s)	282, 375, 423, 680
BsaJI	CCNNGG	6 cut(s)	242, 306, 334, 391, 654, 684
BsaWI	WCCGGW	1 cut(s)	618
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 507
Bse118I	RCCGGY	4 cut(s)	70, 589, 631, 640
Bse1I	ACTGG	2 cut(s)	362, 427
BseBI	CCWGG	2 cut(s)	307, 508
BseDI	CCNNGG	6 cut(s)	242, 306, 334, 391, 654, 684
BseGI	GGATG	6 cut(s)	30, 720, 781, 790, 814, 1026
BseLI	CCNNNNNNNGG	2 cut(s)	352, 507
BseMII	CTCAG	1 cut(s)	933
BseNI	ACTGG	2 cut(s)	362, 427
BseRI	GAGGAG	5 cut(s)	70, 223, 794, 827, 888
BseX3I	CGGCCG	2 cut(s)	68, 651
BseXI	GCAGC	5 cut(s)	28, 324, 591, 721, 724
Bsh1236I	CGCG	7 cut(s)	26, 58, 93, 261, 336, 596, 686
Bsh1285I	CGRYCG	6 cut(s)	71, 523, 594, 645, 654, 732
BshFI	GGCC	6 cut(s)	70, 247, 396, 511, 640, 653
BsiEI	CGRYCG	6 cut(s)	71, 523, 594, 645, 654, 732
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	7 cut(s)	35, 71, 590, 619, 632, 641, 1074
BsiWI	CGTACG	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	352, 507
BsmAI	GTCTC	2 cut(s)	105, 837
BsmI	GAATGC	1 cut(s)	987
BsnI	GGCC	6 cut(s)	70, 247, 396, 511, 640, 653
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	520, 542
BspANI	GGCC	6 cut(s)	70, 247, 396, 511, 640, 653
BspCNI	CTCAG	1 cut(s)	934
BspFNI	CGCG	7 cut(s)	26, 58, 93, 261, 336, 596, 686
BspLI	GGNNCC	1 cut(s)	600
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	550
BsrFI	RCCGGY	4 cut(s)	70, 589, 631, 640
BsrI	ACTGG	2 cut(s)	362, 427
BssAI	RCCGGY	4 cut(s)	70, 589, 631, 640
BssECI	CCNNGG	6 cut(s)	242, 306, 334, 391, 654, 684
BssMI	GATC	2 cut(s)	520, 542
BssNI	GRCGYC	4 cut(s)	282, 375, 423, 680
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	2 cut(s)	307, 508
Bst4CI	ACNGT	1 cut(s)	416
Bst6I	CTCTTC	4 cut(s)	508, 665, 765, 881
BstACI	GRCGYC	4 cut(s)	282, 375, 423, 680
BstAPI	GCANNNNNTGC	1 cut(s)	982
BstC8I	GCNNGC	4 cut(s)	72, 612, 633, 1067
BstDEI	CTNAG	2 cut(s)	942, 993
BstDSI	CCRYGG	4 cut(s)	334, 391, 654, 684
BstF5I	GGATG	6 cut(s)	30, 720, 781, 790, 814, 1026
BstFNI	CGCG	7 cut(s)	26, 58, 93, 261, 336, 596, 686
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	2 cut(s)	28, 76
BstKTI	GATC	2 cut(s)	523, 545
BstMAI	GTCTC	2 cut(s)	105, 837
BstMBI	GATC	2 cut(s)	520, 542
BstMCI	CGRYCG	6 cut(s)	71, 523, 594, 645, 654, 732
BstNI	CCWGG	2 cut(s)	307, 508
BstSCI	CCNGG	4 cut(s)	33, 305, 506, 1072
BstUI	CGCG	7 cut(s)	26, 58, 93, 261, 336, 596, 686
BstV1I	GCAGC	5 cut(s)	28, 324, 591, 721, 724
BstV2I	GAAGAC	2 cut(s)	285, 413
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BstZI	CGGCCG	2 cut(s)	68, 651
BsuRI	GGCC	6 cut(s)	70, 247, 396, 511, 640, 653
BtgI	CCRYGG	4 cut(s)	334, 391, 654, 684
BtgZI	GCGATG	1 cut(s)	707
BtsCI	GGATG	6 cut(s)	30, 720, 781, 790, 814, 1026
BtsIMutI	CAGTG	1 cut(s)	434
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	4 cut(s)	72, 612, 633, 1067
CfoI	GCGC	2 cut(s)	28, 76
Cfr10I	RCCGGY	4 cut(s)	70, 589, 631, 640
Cfr13I	GGNCC	2 cut(s)	246, 1039
Cfr42I	CCGCGG	2 cut(s)	337, 687
CseI	GACGC	6 cut(s)	99, 290, 383, 418, 539, 669
Csp6I	GTAC	3 cut(s)	417, 463, 616
CviAII	CATG	2 cut(s)	250, 1027
CviQI	GTAC	3 cut(s)	417, 463, 616
DdeI	CTNAG	2 cut(s)	942, 993
DpnI	GATC	2 cut(s)	522, 544
DpnII	GATC	2 cut(s)	520, 542
DrdI	GACNNNNNNGTC	1 cut(s)	1037
DseDI	GACNNNNNNGTC	1 cut(s)	1037
EaeI	YGGCCR	3 cut(s)	68, 394, 651
EagI	CGGCCG	2 cut(s)	68, 651
Eam1104I	CTCTTC	4 cut(s)	508, 665, 765, 881
EarI	CTCTTC	4 cut(s)	508, 665, 765, 881
EciI	GGCGGA	4 cut(s)	335, 764, 833, 885
Ecl136II	GAGCTC	1 cut(s)	328
EclXI	CGGCCG	2 cut(s)	68, 651
Eco130I	CCWWGG	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	1039
Eco52I	CGGCCG	2 cut(s)	68, 651
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	694
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	305, 506
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	2 cut(s)	253, 1030
FaiI	YATR	3 cut(s)	251, 1028, 1092
FatI	CATG	2 cut(s)	249, 1026
FokI	GGATG	6 cut(s)	17, 727, 788, 797, 821, 1033
FriOI	GRGCYC	1 cut(s)	330
FspBI	CTAG	3 cut(s)	243, 480, 1096
GlaI	GCGC	2 cut(s)	27, 75
GsuI	CTGGAG	3 cut(s)	292, 510, 1067
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	6 cut(s)	70, 247, 396, 511, 640, 653
HapII	CCGG	7 cut(s)	35, 71, 590, 619, 632, 641, 1074
HgaI	GACGC	6 cut(s)	99, 290, 383, 418, 539, 669
HhaI	GCGC	2 cut(s)	28, 76
Hin1I	GRCGYC	4 cut(s)	282, 375, 423, 680
Hin1II	CATG	2 cut(s)	253, 1030
Hin6I	GCGC	2 cut(s)	26, 74
HinP1I	GCGC	2 cut(s)	26, 74
HincII	GTYRAC	2 cut(s)	213, 382
HindII	GTYRAC	2 cut(s)	213, 382
HinfI	GANTC	5 cut(s)	194, 292, 302, 436, 1053
HpaII	CCGG	7 cut(s)	35, 71, 590, 619, 632, 641, 1074
Hpy166II	GTNNAC	2 cut(s)	213, 382
Hpy188I	TCNGA	3 cut(s)	542, 930, 1011
Hpy188III	TCNNGA	7 cut(s)	175, 454, 472, 489, 553, 646, 712
Hpy8I	GTNNAC	2 cut(s)	213, 382
HpyAV	CCTTC	5 cut(s)	346, 469, 591, 636, 872
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	2 cut(s)	423, 549
HpyCH4V	TGCA	2 cut(s)	432, 985
HpyF3I	CTNAG	2 cut(s)	942, 993
HpySE526I	ACGT	2 cut(s)	423, 549
Hsp92I	GRCGYC	4 cut(s)	282, 375, 423, 680
Hsp92II	CATG	2 cut(s)	253, 1030
HspAI	GCGC	2 cut(s)	26, 74
KroI	GCCGGC	2 cut(s)	70, 631
KroNI	GCCGGC	2 cut(s)	72, 633
KspI	CCGCGG	2 cut(s)	337, 687
Kzo9I	GATC	2 cut(s)	520, 542
LmnI	GCTCC	2 cut(s)	172, 273
Lsp1109I	GCAGC	5 cut(s)	28, 324, 591, 721, 724
MaeI	CTAG	3 cut(s)	243, 480, 1096
MaeII	ACGT	2 cut(s)	423, 549
MaeIII	GTNAC	2 cut(s)	317, 646
MalI	GATC	2 cut(s)	522, 544
MboI	GATC	2 cut(s)	520, 542
MboII	GAAGA	9 cut(s)	290, 418, 469, 495, 682, 700, 782, 803, 898
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	4 cut(s)	157, 226, 441, 718
MlyI	GAGTC	2 cut(s)	286, 296
MmeI	TCCRAC	1 cut(s)	948
MreI	CGCCGGCG	1 cut(s)	631
MroNI	GCCGGC	2 cut(s)	70, 631
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	5 cut(s)	336, 604, 610, 686, 1045
MspI	CCGG	7 cut(s)	35, 71, 590, 619, 632, 641, 1074
MspR9I	CCNGG	4 cut(s)	35, 307, 508, 1074
Mva1269I	GAATGC	1 cut(s)	987
MvaI	CCWGG	2 cut(s)	307, 508
MvnI	CGCG	7 cut(s)	26, 58, 93, 261, 336, 596, 686
NaeI	GCCGGC	2 cut(s)	72, 633
NciI	CCSGG	2 cut(s)	35, 1074
NdeII	GATC	2 cut(s)	520, 542
NgoMIV	GCCGGC	2 cut(s)	70, 631
NlaIII	CATG	2 cut(s)	253, 1030
NlaIV	GGNNCC	1 cut(s)	600
NmeAIII	GCCGAG	1 cut(s)	704
NmuCI	GTSAC	1 cut(s)	646
PaeR7I	CTCGAG	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	8 cut(s)	206, 212, 375, 525, 546, 651, 762, 765
PctI	GAATGC	1 cut(s)	987
PdiI	GCCGGC	2 cut(s)	72, 633
PfeI	GAWTC	3 cut(s)	194, 436, 1053
Pfl23II	CGTACG	1 cut(s)	416
PflFI	GACNNNGTC	1 cut(s)	377
Ple19I	CGATCG	1 cut(s)	523
PleI	GAGTC	2 cut(s)	286, 296
PpsI	GAGTC	2 cut(s)	286, 296
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	305, 506
PspGI	CCWGG	2 cut(s)	305, 506
PspLI	CGTACG	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	2 cut(s)	246, 1039
PspXI	VCTCGAGB	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	542
PsyI	GACNNNGTC	1 cut(s)	377
PvuI	CGATCG	1 cut(s)	523
PvuII	CAGCTG	1 cut(s)	1045
RsaI	GTAC	3 cut(s)	418, 464, 617
RsaNI	GTAC	3 cut(s)	417, 463, 616
SacI	GAGCTC	1 cut(s)	330
SacII	CCGCGG	2 cut(s)	337, 687
SaqAI	TTAA	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	520, 542
Sau96I	GGNCC	2 cut(s)	246, 1039
SchI	GAGTC	2 cut(s)	286, 296
ScrFI	CCNGG	4 cut(s)	35, 307, 508, 1074
SduI	GDGCHC	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	323
Sfr303I	CCGCGG	2 cut(s)	337, 687
SgrAI	CRCCGGYG	1 cut(s)	631
SgrBI	CCGCGG	2 cut(s)	337, 687
SinI	GGWCC	1 cut(s)	1039
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	157, 226, 441, 718
SspMI	CTAG	3 cut(s)	243, 480, 1096
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	4 cut(s)	33, 305, 506, 1072
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	2 cut(s)	426, 552
TaqI	TCGA	8 cut(s)	8, 290, 300, 324, 439, 471, 519, 528
TasI	AATT	4 cut(s)	157, 226, 441, 718
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	3 cut(s)	194, 436, 1053
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	434
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	5 cut(s)	16, 312, 604, 734, 737
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	3 cut(s)	710, 731, 1015
TspGWI	ACGGA	3 cut(s)	159, 206, 434
TspRI	CASTG	1 cut(s)	434
Tth111I	GACNNNGTC	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	1039
XhoI	CTCGAG	1 cut(s)	323
XmaJI	CCTAGG	1 cut(s)	242
XspI	CTAG	3 cut(s)	243, 480, 1096
ZraI	GACGTC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.