Rh5BG079900
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003314
Physical Location & Seq
Reverse (-)
6797972 .. 6801973
4002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG079900.1

Sequence Viewer

Length: 921 bp
ATGGGCGACCTAACGGAATCCTCACTCACGCCGTCAACCACCACCCCCAATTCCTCCTCAAACCCTAGGCCCATGCCCGTCCGCGAGGACTGCTGGAGCGAAGACGCCACCTCGACTCTCATCGACTCCTGGGGCCGCCGTTACCTCGAGCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGCAGGAGGTCGCCGACGCCGTCAACGCCCTACACGGCCACACCAAGAAGACGCACCGTACGGACGTCCAGTGCAAGAATCGAATTGATACTATCAAGAAGAAGTACAAGGTCGAGAAGGCTAGGGTTTCTGGAGGATTGACCTCTTCCTGGCCTTTTTTCGATCGCCTCGACGCTCTCATCGGATCTAACGTCAAGAAGCCCTCGCCGTCGTCGCTCTCGCCTTCGCCGCCGGTCGCGGTTCCGCTGCCGCTGGCGTACCGGAAGCCGTCGCCGGCGAGGCCGGTCGTGACGGCCGTGGCTCTGCCGCAGAAGAGGTCGGCGTCCGCGGCGGCGATGAACGAGGGGTTCTTCAGGATGAATTACTCGGCGGTCGCTGCTGCGGCGGCGGCGGAGAACGACGACGACGACGACGACGAAGAGGATGAGGAAGATAACGACGACGGGGATGAGGAGGCGGAGGTGGAGAGGGAGAGGGAGAGAGACAGCGACGGCGAGATTGGAGGCGGCGGCGGAGGAGAAGGGTTGAAGAGATTGGCGAGGGCAATAGAGAGGTTTGGGGAGGTATATCAGAGAGTGGAGGCTGAGAAGTTGAGGCAGATGGTGGAGTTGGAAAAGCAGAGAATGCAGTTTGCTAAGGACTTGGAGGTTCAGAGAATGAGGATGTTCATGGACACACAGGTCCAGCTGGAGCGGATCAAGCACGGCAAGCGACCCGGCTCTAATGATATTTATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

306

Amino Acids

34.2

Weight (kDa)

5.31

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 30 - 120 4.2e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 860
AatII GACGTC 1 cut(s) 249
AccBSI CCGCTC 1 cut(s) 874
AccII CGCG 4 cut(s) 84, 159, 419, 509
AclWI GGATC 2 cut(s) 373, 884
AcoI YGGCCR 2 cut(s) 217, 474
AcuI CTGAAG 1 cut(s) 517
AcyI GRCGYC 4 cut(s) 105, 198, 246, 503
AfaI GTAC 3 cut(s) 241, 287, 440
AfiI CCNNNNNNNGG 2 cut(s) 175, 330
AgsI TTSAA 1 cut(s) 709
AjnI CCWGG 2 cut(s) 128, 329
AluBI AGCT 3 cut(s) 151, 868, 918
AluI AGCT 3 cut(s) 151, 868, 918
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 657
AlwI GGATC 2 cut(s) 373, 884
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 6 cut(s) 68, 133, 217, 332, 461, 474
ApeKI GCWGC 3 cut(s) 427, 557, 560
AspA2I CCTAGG 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 69, 133, 862
AsuC2I CCSGG 1 cut(s) 897
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 862
AvrII CCTAGG 1 cut(s) 65
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 2 cut(s) 108, 236
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 414, 544, 547
BccI CCATC 1 cut(s) 775
BciT130I CCWGG 2 cut(s) 130, 331
BcnI CCSGG 1 cut(s) 897
BcoDI GTCTC 1 cut(s) 657
BfaI CTAG 3 cut(s) 66, 303, 919
BglI GCCNNNNNGGC 1 cut(s) 460
BlnI CCTAGG 1 cut(s) 65
Bme1390I CCNGG 3 cut(s) 130, 331, 897
Bme18I GGWCC 1 cut(s) 862
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 3 cut(s) 69, 133, 862
BmiI GGNNCC 2 cut(s) 134, 423
BmrFI CCNGG 3 cut(s) 130, 331, 897
BpiI GAAGAC 2 cut(s) 108, 236
BpmI CTGGAG 3 cut(s) 115, 333, 890
Bpu10I CCTNAGC 1 cut(s) 816
BpuMI CCSGG 1 cut(s) 897
BsaHI GRCGYC 4 cut(s) 105, 198, 246, 503
BsaJI CCNNGG 5 cut(s) 65, 129, 157, 477, 507
BsaWI WCCGGW 1 cut(s) 441
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 330
Bse118I RCCGGY 3 cut(s) 412, 454, 463
Bse1I ACTGG 2 cut(s) 185, 250
BseBI CCWGG 2 cut(s) 130, 331
BseDI CCNNGG 5 cut(s) 65, 129, 157, 477, 507
BseGI GGATG 4 cut(s) 543, 610, 634, 849
BseLI CCNNNNNNNGG 2 cut(s) 175, 330
BseMII CTCAG 1 cut(s) 756
BseNI ACTGG 2 cut(s) 185, 250
BseRI GAGGAG 3 cut(s) 46, 647, 711
BseX3I CGGCCG 1 cut(s) 474
BseXI GCAGC 3 cut(s) 414, 544, 547
Bsh1236I CGCG 4 cut(s) 84, 159, 419, 509
Bsh1285I CGRYCG 5 cut(s) 346, 417, 468, 477, 555
BshFI GGCC 6 cut(s) 70, 135, 219, 334, 463, 476
BsiEI CGRYCG 5 cut(s) 346, 417, 468, 477, 555
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 5 cut(s) 413, 442, 455, 464, 897
BsiWI CGTACG 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 175, 330
BsmAI GTCTC 1 cut(s) 657
BsmI GAATGC 1 cut(s) 810
BsnI GGCC 6 cut(s) 70, 135, 219, 334, 463, 476
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 3 cut(s) 343, 365, 876
BspANI GGCC 6 cut(s) 70, 135, 219, 334, 463, 476
BspCNI CTCAG 1 cut(s) 757
BspFNI CGCG 4 cut(s) 84, 159, 419, 509
BspLI GGNNCC 2 cut(s) 134, 423
BspPI GGATC 2 cut(s) 373, 884
BsrBI CCGCTC 1 cut(s) 874
BsrFI RCCGGY 3 cut(s) 412, 454, 463
BsrI ACTGG 2 cut(s) 185, 250
BssAI RCCGGY 3 cut(s) 412, 454, 463
BssECI CCNNGG 5 cut(s) 65, 129, 157, 477, 507
BssMI GATC 3 cut(s) 343, 365, 876
BssNI GRCGYC 4 cut(s) 105, 198, 246, 503
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 130, 331
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 4 cut(s) 331, 488, 594, 704
BstACI GRCGYC 4 cut(s) 105, 198, 246, 503
BstAPI GCANNNNNTGC 1 cut(s) 805
BstC8I GCNNGC 3 cut(s) 435, 456, 890
BstDEI CTNAG 2 cut(s) 765, 816
BstDSI CCRYGG 3 cut(s) 157, 477, 507
BstF5I GGATG 4 cut(s) 543, 610, 634, 849
BstFNI CGCG 4 cut(s) 84, 159, 419, 509
BstKTI GATC 3 cut(s) 346, 368, 879
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 3 cut(s) 343, 365, 876
BstMCI CGRYCG 5 cut(s) 346, 417, 468, 477, 555
BstNI CCWGG 2 cut(s) 130, 331
BstSCI CCNGG 3 cut(s) 128, 329, 895
BstUI CGCG 4 cut(s) 84, 159, 419, 509
BstV1I GCAGC 3 cut(s) 414, 544, 547
BstV2I GAAGAC 2 cut(s) 108, 236
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BstZI CGGCCG 1 cut(s) 474
BsuRI GGCC 6 cut(s) 70, 135, 219, 334, 463, 476
BtgI CCRYGG 3 cut(s) 157, 477, 507
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 4 cut(s) 543, 610, 634, 849
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 435, 456, 890
Cfr10I RCCGGY 3 cut(s) 412, 454, 463
Cfr13I GGNCC 3 cut(s) 69, 133, 862
Cfr42I CCGCGG 2 cut(s) 160, 510
CseI GACGC 5 cut(s) 113, 206, 241, 362, 492
Csp6I GTAC 3 cut(s) 240, 286, 439
CviAII CATG 2 cut(s) 73, 850
CviQI GTAC 3 cut(s) 240, 286, 439
DdeI CTNAG 2 cut(s) 765, 816
DpnI GATC 3 cut(s) 345, 367, 878
DpnII GATC 3 cut(s) 343, 365, 876
DrdI GACNNNNNNGTC 1 cut(s) 860
DseDI GACNNNNNNGTC 1 cut(s) 860
EaeI YGGCCR 2 cut(s) 217, 474
EagI CGGCCG 1 cut(s) 474
Eam1104I CTCTTC 4 cut(s) 331, 488, 594, 704
EarI CTCTTC 4 cut(s) 331, 488, 594, 704
EciI GGCGGA 4 cut(s) 158, 587, 653, 708
Ecl136II GAGCTC 1 cut(s) 151
EclXI CGGCCG 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 862
Eco52I CGGCCG 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 128, 329
EcoT14I CCWWGG 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 2 cut(s) 76, 853
FaiI YATR 4 cut(s) 74, 748, 851, 915
FatI CATG 2 cut(s) 72, 849
FokI GGATG 4 cut(s) 550, 617, 641, 856
FriOI GRGCYC 1 cut(s) 153
FspBI CTAG 3 cut(s) 66, 303, 919
GsuI CTGGAG 3 cut(s) 115, 333, 890
HaeIII GGCC 6 cut(s) 70, 135, 219, 334, 463, 476
HapII CCGG 5 cut(s) 413, 442, 455, 464, 897
HgaI GACGC 5 cut(s) 113, 206, 241, 362, 492
Hin1I GRCGYC 4 cut(s) 105, 198, 246, 503
Hin1II CATG 2 cut(s) 76, 853
HincII GTYRAC 2 cut(s) 36, 205
HindII GTYRAC 2 cut(s) 36, 205
HinfI GANTC 4 cut(s) 17, 115, 125, 259
HpaII CCGG 5 cut(s) 413, 442, 455, 464, 897
Hpy166II GTNNAC 2 cut(s) 36, 205
Hpy188I TCNGA 3 cut(s) 365, 753, 834
Hpy188III TCNNGA 6 cut(s) 277, 295, 312, 376, 469, 535
Hpy8I GTNNAC 2 cut(s) 36, 205
HpyAV CCTTC 4 cut(s) 169, 292, 414, 695
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 2 cut(s) 246, 372
HpyCH4V TGCA 2 cut(s) 255, 808
HpyF3I CTNAG 2 cut(s) 765, 816
HpySE526I ACGT 2 cut(s) 246, 372
Hsp92I GRCGYC 4 cut(s) 105, 198, 246, 503
Hsp92II CATG 2 cut(s) 76, 853
KroI GCCGGC 1 cut(s) 454
KroNI GCCGGC 1 cut(s) 456
KspI CCGCGG 2 cut(s) 160, 510
Kzo9I GATC 3 cut(s) 343, 365, 876
LmnI GCTCC 2 cut(s) 96, 871
Lsp1109I GCAGC 3 cut(s) 414, 544, 547
MaeI CTAG 3 cut(s) 66, 303, 919
MaeII ACGT 2 cut(s) 246, 372
MaeIII GTNAC 2 cut(s) 140, 469
MalI GATC 3 cut(s) 345, 367, 878
MbiI CCGCTC 1 cut(s) 874
MboI GATC 3 cut(s) 343, 365, 876
MboII GAAGA 9 cut(s) 113, 241, 292, 318, 505, 523, 611, 623, 721
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 3 cut(s) 49, 264, 541
MlyI GAGTC 2 cut(s) 109, 119
MmeI TCCRAC 1 cut(s) 771
MreI CGCCGGCG 1 cut(s) 454
MroNI GCCGGC 1 cut(s) 454
MspA1I CMGCKG 5 cut(s) 159, 427, 433, 509, 868
MspI CCGG 5 cut(s) 413, 442, 455, 464, 897
MspR9I CCNGG 3 cut(s) 130, 331, 897
Mva1269I GAATGC 1 cut(s) 810
MvaI CCWGG 2 cut(s) 130, 331
MvnI CGCG 4 cut(s) 84, 159, 419, 509
NaeI GCCGGC 1 cut(s) 456
NciI CCSGG 1 cut(s) 897
NdeII GATC 3 cut(s) 343, 365, 876
NgoMIV GCCGGC 1 cut(s) 454
NlaIII CATG 2 cut(s) 76, 853
NlaIV GGNNCC 2 cut(s) 134, 423
NmeAIII GCCGAG 1 cut(s) 527
NmuCI GTSAC 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 146
PcsI WCGNNNNNNNCGW 8 cut(s) 198, 348, 369, 474, 585, 588, 591, 594
PctI GAATGC 1 cut(s) 810
PdiI GCCGGC 1 cut(s) 456
PfeI GAWTC 2 cut(s) 17, 259
Pfl23II CGTACG 1 cut(s) 239
PflFI GACNNNGTC 1 cut(s) 200
Ple19I CGATCG 1 cut(s) 346
PleI GAGTC 2 cut(s) 109, 119
PpsI GAGTC 2 cut(s) 109, 119
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 128, 329
PspGI CCWGG 2 cut(s) 128, 329
PspLI CGTACG 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 134, 423
PspPI GGNCC 3 cut(s) 69, 133, 862
PspXI VCTCGAGB 1 cut(s) 146
PsuI RGATCY 1 cut(s) 365
PsyI GACNNNGTC 1 cut(s) 200
PvuI CGATCG 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 868
RsaI GTAC 3 cut(s) 241, 287, 440
RsaNI GTAC 3 cut(s) 240, 286, 439
SacI GAGCTC 1 cut(s) 153
SacII CCGCGG 2 cut(s) 160, 510
Sau3AI GATC 3 cut(s) 343, 365, 876
Sau96I GGNCC 3 cut(s) 69, 133, 862
SchI GAGTC 2 cut(s) 109, 119
ScrFI CCNGG 3 cut(s) 130, 331, 897
SduI GDGCHC 1 cut(s) 153
Sfr274I CTCGAG 1 cut(s) 146
Sfr303I CCGCGG 2 cut(s) 160, 510
SgrAI CRCCGGYG 1 cut(s) 454
SgrBI CCGCGG 2 cut(s) 160, 510
SinI GGWCC 1 cut(s) 862
SlaI CTCGAG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 3 cut(s) 49, 264, 541
SspMI CTAG 3 cut(s) 66, 303, 919
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 128, 329, 895
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 2 cut(s) 249, 375
TaqI TCGA 7 cut(s) 113, 123, 147, 262, 294, 342, 351
TasI AATT 3 cut(s) 49, 264, 541
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 2 cut(s) 17, 259
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 3 cut(s) 427, 557, 560
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 3 cut(s) 533, 554, 838
TspGWI ACGGA 2 cut(s) 29, 257
TspRI CASTG 1 cut(s) 257
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 862
XhoI CTCGAG 1 cut(s) 146
XmaJI CCTAGG 1 cut(s) 65
XspI CTAG 3 cut(s) 66, 303, 919
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.