Rw0G022230
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01032
OG0003314
Physical Location & Seq
Forward (+)
47919 .. 51425
3507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022230.1

Sequence Viewer

Length: 1098 bp
ATGACATCGACAAAGCAGCTTCACGCGCTCATCCCGGCGACCTGCCTCCTACACTCGCGGCTCATTCGGCCGGCGCTCTCCTCCCACCGACGCGACCTGTCTCTTAACACCTCTCCCTCTCTCTCTCACAAAACCAACCACAACCCCAAACCCCACAATTTCACAGCTCCGTTCCCGATGGGCGACCTAACGGAATCCTCGCTCACGCCGTCAACCACCACCCCCAATTCCTCCTCAAACCCTAGGCCCATGCCCGTCCGCGAGGACTGCTGGAGCGAAGACGCCACCTCGACTCTCATCGACTCCTGGGGCAGCCGTTACCTCGAGCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGCAGGAGGTCGCCGACGCCGTCAACGCCCTCCACGGCCACACCAAGAAGACGCACCGTACGGACGTCCAGTGCAAGAATCGAATTGATACCATCAAGAAGAAGTACAAGGTCGAGAAGGCTAGGGTTTCTGGAGGATTGACCTCTTCCTGGCCTTTTTTCGATCGCCTCGACGCTCTCATCGGATCTAACGTCAAGAAGCCCTCGCCGTCGTCGCTCTCGCCTTCGCCGCCGGTCGCGGTTCCGCTGCCGCTGGCGTACCGGAAGCCTTCGCCGGCGAGGCCGGTCGTGACGGCCGTGGCTCTGCCGCAGAAGAGGTCGGCGTCCGCGGCGGCGATGAACGAGGGGTTCTTCAGGATGAATTACTCGGCGGTCGCTGCTGCGGCGGCGGCGGAGAACGACGACGACGACGAAGAGGATGAGGAGGATGAGGAAGATAACGACGACGGGGATGAGGAGGCGGAGGTGGAGAGGGAGAGGGAGAGAGACAGCGACGGCGAGATTGGAGGCGGCGGAGGAGAAGGGTTGAAGAGATTGGCGAGGGCAATAGAGAGGTTTGGGGAGGTGTATCAGAGAGTGGAAGCTGAGAAGTTGAGGCAGATGGTGGAGTTGGAAAAGCAGAGAATGCAGTTTGCTAAGGACTTGGAGGTTCAGAGAATGAGGATGTTCATGGACACACAGGTCCAGCTGGAGAGAATCAAGCACGGCAAGCGACCCGGCTCTAATGATATTTATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

365

Amino Acids

40.79

Weight (kDa)

6.25

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 89 - 179 3.2e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1037
AatII GACGTC 1 cut(s) 426
Acc36I ACCTGC 1 cut(s) 50
AccII CGCG 7 cut(s) 26, 58, 93, 261, 336, 596, 686
AclWI GGATC 1 cut(s) 550
AcoI YGGCCR 3 cut(s) 68, 394, 651
AcuI CTGAAG 1 cut(s) 694
AcyI GRCGYC 4 cut(s) 282, 375, 423, 680
AfaI GTAC 3 cut(s) 418, 464, 617
AfiI CCNNNNNNNGG 2 cut(s) 352, 507
AgsI TTSAA 1 cut(s) 886
AjnI CCWGG 2 cut(s) 305, 506
AluBI AGCT 6 cut(s) 19, 167, 328, 941, 1045, 1095
AluI AGCT 6 cut(s) 19, 167, 328, 941, 1045, 1095
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 2 cut(s) 105, 837
AlwI GGATC 1 cut(s) 550
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 6 cut(s) 68, 245, 394, 509, 638, 651
ApeKI GCWGC 5 cut(s) 16, 312, 604, 734, 737
AspA2I CCTAGG 1 cut(s) 242
AspLEI GCGC 2 cut(s) 28, 76
AspS9I GGNCC 2 cut(s) 246, 1039
AsuC2I CCSGG 2 cut(s) 35, 1074
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 1039
AvrII CCTAGG 1 cut(s) 242
BanII GRGCYC 1 cut(s) 330
BbsI GAAGAC 2 cut(s) 285, 413
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 5 cut(s) 28, 324, 591, 721, 724
BccI CCATC 3 cut(s) 172, 458, 952
BceAI ACGGC 9 cut(s) 193, 300, 362, 409, 550, 638, 666, 868, 1078
BciT130I CCWGG 2 cut(s) 307, 508
BcnI CCSGG 2 cut(s) 35, 1074
BcoDI GTCTC 2 cut(s) 105, 837
BfaI CTAG 3 cut(s) 243, 480, 1096
BfoI RGCGCY 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 50
BglI GCCNNNNNGGC 1 cut(s) 637
BlnI CCTAGG 1 cut(s) 242
Bme1390I CCNGG 4 cut(s) 35, 307, 508, 1074
Bme18I GGWCC 1 cut(s) 1039
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 246, 1039
BmiI GGNNCC 1 cut(s) 600
BmrFI CCNGG 4 cut(s) 35, 307, 508, 1074
BpiI GAAGAC 2 cut(s) 285, 413
BpmI CTGGAG 3 cut(s) 292, 510, 1067
Bpu10I CCTNAGC 1 cut(s) 993
BpuMI CCSGG 2 cut(s) 35, 1074
BsaHI GRCGYC 4 cut(s) 282, 375, 423, 680
BsaJI CCNNGG 6 cut(s) 242, 306, 334, 391, 654, 684
BsaWI WCCGGW 1 cut(s) 618
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 507
Bse118I RCCGGY 4 cut(s) 70, 589, 631, 640
Bse1I ACTGG 2 cut(s) 362, 427
BseBI CCWGG 2 cut(s) 307, 508
BseDI CCNNGG 6 cut(s) 242, 306, 334, 391, 654, 684
BseGI GGATG 6 cut(s) 30, 720, 781, 790, 814, 1026
BseLI CCNNNNNNNGG 2 cut(s) 352, 507
BseMII CTCAG 1 cut(s) 933
BseNI ACTGG 2 cut(s) 362, 427
BseRI GAGGAG 5 cut(s) 70, 223, 794, 827, 888
BseX3I CGGCCG 2 cut(s) 68, 651
BseXI GCAGC 5 cut(s) 28, 324, 591, 721, 724
Bsh1236I CGCG 7 cut(s) 26, 58, 93, 261, 336, 596, 686
Bsh1285I CGRYCG 6 cut(s) 71, 523, 594, 645, 654, 732
BshFI GGCC 6 cut(s) 70, 247, 396, 511, 640, 653
BsiEI CGRYCG 6 cut(s) 71, 523, 594, 645, 654, 732
BsiHKAI GWGCWC 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 7 cut(s) 35, 71, 590, 619, 632, 641, 1074
BsiWI CGTACG 1 cut(s) 416
BslI CCNNNNNNNGG 2 cut(s) 352, 507
BsmAI GTCTC 2 cut(s) 105, 837
BsmI GAATGC 1 cut(s) 987
BsnI GGCC 6 cut(s) 70, 247, 396, 511, 640, 653
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 2 cut(s) 520, 542
BspANI GGCC 6 cut(s) 70, 247, 396, 511, 640, 653
BspCNI CTCAG 1 cut(s) 934
BspFNI CGCG 7 cut(s) 26, 58, 93, 261, 336, 596, 686
BspLI GGNNCC 1 cut(s) 600
BspMI ACCTGC 1 cut(s) 50
BspPI GGATC 1 cut(s) 550
BsrFI RCCGGY 4 cut(s) 70, 589, 631, 640
BsrI ACTGG 2 cut(s) 362, 427
BssAI RCCGGY 4 cut(s) 70, 589, 631, 640
BssECI CCNNGG 6 cut(s) 242, 306, 334, 391, 654, 684
BssMI GATC 2 cut(s) 520, 542
BssNI GRCGYC 4 cut(s) 282, 375, 423, 680
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 307, 508
Bst4CI ACNGT 1 cut(s) 416
Bst6I CTCTTC 4 cut(s) 508, 665, 765, 881
BstACI GRCGYC 4 cut(s) 282, 375, 423, 680
BstAPI GCANNNNNTGC 1 cut(s) 982
BstC8I GCNNGC 4 cut(s) 72, 612, 633, 1067
BstDEI CTNAG 2 cut(s) 942, 993
BstDSI CCRYGG 4 cut(s) 334, 391, 654, 684
BstF5I GGATG 6 cut(s) 30, 720, 781, 790, 814, 1026
BstFNI CGCG 7 cut(s) 26, 58, 93, 261, 336, 596, 686
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 2 cut(s) 28, 76
BstKTI GATC 2 cut(s) 523, 545
BstMAI GTCTC 2 cut(s) 105, 837
BstMBI GATC 2 cut(s) 520, 542
BstMCI CGRYCG 6 cut(s) 71, 523, 594, 645, 654, 732
BstNI CCWGG 2 cut(s) 307, 508
BstSCI CCNGG 4 cut(s) 33, 305, 506, 1072
BstUI CGCG 7 cut(s) 26, 58, 93, 261, 336, 596, 686
BstV1I GCAGC 5 cut(s) 28, 324, 591, 721, 724
BstV2I GAAGAC 2 cut(s) 285, 413
BstX2I RGATCY 1 cut(s) 542
BstYI RGATCY 1 cut(s) 542
BstZI CGGCCG 2 cut(s) 68, 651
BsuRI GGCC 6 cut(s) 70, 247, 396, 511, 640, 653
BtgI CCRYGG 4 cut(s) 334, 391, 654, 684
BtgZI GCGATG 1 cut(s) 707
BtsCI GGATG 6 cut(s) 30, 720, 781, 790, 814, 1026
BtsIMutI CAGTG 1 cut(s) 434
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 4 cut(s) 72, 612, 633, 1067
CfoI GCGC 2 cut(s) 28, 76
Cfr10I RCCGGY 4 cut(s) 70, 589, 631, 640
Cfr13I GGNCC 2 cut(s) 246, 1039
Cfr42I CCGCGG 2 cut(s) 337, 687
CseI GACGC 6 cut(s) 99, 290, 383, 418, 539, 669
Csp6I GTAC 3 cut(s) 417, 463, 616
CviAII CATG 2 cut(s) 250, 1027
CviQI GTAC 3 cut(s) 417, 463, 616
DdeI CTNAG 2 cut(s) 942, 993
DpnI GATC 2 cut(s) 522, 544
DpnII GATC 2 cut(s) 520, 542
DrdI GACNNNNNNGTC 1 cut(s) 1037
DseDI GACNNNNNNGTC 1 cut(s) 1037
EaeI YGGCCR 3 cut(s) 68, 394, 651
EagI CGGCCG 2 cut(s) 68, 651
Eam1104I CTCTTC 4 cut(s) 508, 665, 765, 881
EarI CTCTTC 4 cut(s) 508, 665, 765, 881
EciI GGCGGA 4 cut(s) 335, 764, 833, 885
Ecl136II GAGCTC 1 cut(s) 328
EclXI CGGCCG 2 cut(s) 68, 651
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 1039
Eco52I CGGCCG 2 cut(s) 68, 651
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 694
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 305, 506
EcoT14I CCWWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 2 cut(s) 253, 1030
FaiI YATR 3 cut(s) 251, 1028, 1092
FatI CATG 2 cut(s) 249, 1026
FokI GGATG 6 cut(s) 17, 727, 788, 797, 821, 1033
FriOI GRGCYC 1 cut(s) 330
FspBI CTAG 3 cut(s) 243, 480, 1096
GlaI GCGC 2 cut(s) 27, 75
GsuI CTGGAG 3 cut(s) 292, 510, 1067
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 6 cut(s) 70, 247, 396, 511, 640, 653
HapII CCGG 7 cut(s) 35, 71, 590, 619, 632, 641, 1074
HgaI GACGC 6 cut(s) 99, 290, 383, 418, 539, 669
HhaI GCGC 2 cut(s) 28, 76
Hin1I GRCGYC 4 cut(s) 282, 375, 423, 680
Hin1II CATG 2 cut(s) 253, 1030
Hin6I GCGC 2 cut(s) 26, 74
HinP1I GCGC 2 cut(s) 26, 74
HincII GTYRAC 2 cut(s) 213, 382
HindII GTYRAC 2 cut(s) 213, 382
HinfI GANTC 5 cut(s) 194, 292, 302, 436, 1053
HpaII CCGG 7 cut(s) 35, 71, 590, 619, 632, 641, 1074
Hpy166II GTNNAC 2 cut(s) 213, 382
Hpy188I TCNGA 3 cut(s) 542, 930, 1011
Hpy188III TCNNGA 7 cut(s) 175, 454, 472, 489, 553, 646, 712
Hpy8I GTNNAC 2 cut(s) 213, 382
HpyAV CCTTC 5 cut(s) 346, 469, 591, 636, 872
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4IV ACGT 2 cut(s) 423, 549
HpyCH4V TGCA 2 cut(s) 432, 985
HpyF3I CTNAG 2 cut(s) 942, 993
HpySE526I ACGT 2 cut(s) 423, 549
Hsp92I GRCGYC 4 cut(s) 282, 375, 423, 680
Hsp92II CATG 2 cut(s) 253, 1030
HspAI GCGC 2 cut(s) 26, 74
KroI GCCGGC 2 cut(s) 70, 631
KroNI GCCGGC 2 cut(s) 72, 633
KspI CCGCGG 2 cut(s) 337, 687
Kzo9I GATC 2 cut(s) 520, 542
LmnI GCTCC 2 cut(s) 172, 273
Lsp1109I GCAGC 5 cut(s) 28, 324, 591, 721, 724
MaeI CTAG 3 cut(s) 243, 480, 1096
MaeII ACGT 2 cut(s) 423, 549
MaeIII GTNAC 2 cut(s) 317, 646
MalI GATC 2 cut(s) 522, 544
MboI GATC 2 cut(s) 520, 542
MboII GAAGA 9 cut(s) 290, 418, 469, 495, 682, 700, 782, 803, 898
MflI RGATCY 1 cut(s) 542
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 4 cut(s) 157, 226, 441, 718
MlyI GAGTC 2 cut(s) 286, 296
MmeI TCCRAC 1 cut(s) 948
MreI CGCCGGCG 1 cut(s) 631
MroNI GCCGGC 2 cut(s) 70, 631
MseI TTAA 1 cut(s) 105
MspA1I CMGCKG 5 cut(s) 336, 604, 610, 686, 1045
MspI CCGG 7 cut(s) 35, 71, 590, 619, 632, 641, 1074
MspR9I CCNGG 4 cut(s) 35, 307, 508, 1074
Mva1269I GAATGC 1 cut(s) 987
MvaI CCWGG 2 cut(s) 307, 508
MvnI CGCG 7 cut(s) 26, 58, 93, 261, 336, 596, 686
NaeI GCCGGC 2 cut(s) 72, 633
NciI CCSGG 2 cut(s) 35, 1074
NdeII GATC 2 cut(s) 520, 542
NgoMIV GCCGGC 2 cut(s) 70, 631
NlaIII CATG 2 cut(s) 253, 1030
NlaIV GGNNCC 1 cut(s) 600
NmeAIII GCCGAG 1 cut(s) 704
NmuCI GTSAC 1 cut(s) 646
PaeR7I CTCGAG 1 cut(s) 323
PcsI WCGNNNNNNNCGW 7 cut(s) 206, 375, 525, 546, 651, 762, 765
PctI GAATGC 1 cut(s) 987
PdiI GCCGGC 2 cut(s) 72, 633
PfeI GAWTC 3 cut(s) 194, 436, 1053
Pfl23II CGTACG 1 cut(s) 416
PflFI GACNNNGTC 1 cut(s) 377
Ple19I CGATCG 1 cut(s) 523
PleI GAGTC 2 cut(s) 286, 296
PpsI GAGTC 2 cut(s) 286, 296
Psp124BI GAGCTC 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 305, 506
PspGI CCWGG 2 cut(s) 305, 506
PspLI CGTACG 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 600
PspPI GGNCC 2 cut(s) 246, 1039
PspXI VCTCGAGB 1 cut(s) 323
PsuI RGATCY 1 cut(s) 542
PsyI GACNNNGTC 1 cut(s) 377
PvuI CGATCG 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 1045
RsaI GTAC 3 cut(s) 418, 464, 617
RsaNI GTAC 3 cut(s) 417, 463, 616
SacI GAGCTC 1 cut(s) 330
SacII CCGCGG 2 cut(s) 337, 687
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 2 cut(s) 520, 542
Sau96I GGNCC 2 cut(s) 246, 1039
SchI GAGTC 2 cut(s) 286, 296
ScrFI CCNGG 4 cut(s) 35, 307, 508, 1074
SduI GDGCHC 1 cut(s) 330
Sfr274I CTCGAG 1 cut(s) 323
Sfr303I CCGCGG 2 cut(s) 337, 687
SgrAI CRCCGGYG 1 cut(s) 631
SgrBI CCGCGG 2 cut(s) 337, 687
SinI GGWCC 1 cut(s) 1039
SlaI CTCGAG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 4 cut(s) 157, 226, 441, 718
SspMI CTAG 3 cut(s) 243, 480, 1096
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 4 cut(s) 33, 305, 506, 1072
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 416
TaiI ACGT 2 cut(s) 426, 552
TaqI TCGA 8 cut(s) 8, 290, 300, 324, 439, 471, 519, 528
TasI AATT 4 cut(s) 157, 226, 441, 718
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 3 cut(s) 194, 436, 1053
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 434
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 5 cut(s) 16, 312, 604, 734, 737
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 3 cut(s) 710, 731, 1015
TspGWI ACGGA 3 cut(s) 159, 206, 434
TspRI CASTG 1 cut(s) 434
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 1039
XhoI CTCGAG 1 cut(s) 323
XmaJI CCTAGG 1 cut(s) 242
XspI CTAG 3 cut(s) 243, 480, 1096
ZraI GACGTC 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.