RLG00000031785
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003314
Physical Location & Seq
Reverse (-)
8209410 .. 8212815
3406 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031785

Sequence Viewer

Length: 933 bp
ATGGGCGACCTAACGGAATCCTCCCTCACGCCGTCAACCACCACCCCCAATTCCTCCTCAAACCCTAGGCCCATGCCCGTCCGCGAGGACTGCTGGAGCGAAGACGCCACCTCGACTCTCATCGACTCCTGGGGCCGCCGTTACCTCGAGCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGCAGGAGGTCGCCGACGCCGTCAACGCCCTCCACGGCCACACCAAGAAGACGCACCGTACGGACGTCCAGTGCAAGAATCGAATTGATACTATCAAGAAGAAGTACAAGGTCGAGAAGGGTAGGGTTTCTGCAGGATTGACCTCTTCCTGGCCTTTTTTCGATCGCCTCGACGCTCTCATCGGATCTAACGTCAAGAAGCCCTCGCCGTCGCTCTCGCCTTCTCCGCCGGTCGCGGTTCCGCTGCCGCTGGCCTACCGGAAGCCTTCGCCGGCGAGGCCGGTCGTGACGGCCGTGGCTCTGCCTCAGAAGAGGTCGGCGTCCGCGGCGGCGATGAACGAGGGGTTCTTCAGGATGAATTACTCGGCGGTCGCTGCTGCGGCGGCGGCGGAGAACGACGACGACGACGAAGAGGATGAGGAGGATGAGGAAGATAACGACGACGGGGATGAGGAGGCGGAGGTGGAGAGGGAGAGAGACAGCGACGGCGAGATTGGAGGCGGCGGCGGCGGCGTAGGAGGAGGAGGAGGAGAAGGGTTGAAGAGATTGGCGAGGGCAATAGAGAGGTTTGGGGAGGTGTATCAGAGAGTGGAGGCTGAGAAGTTGAGGCAGATGGTGGAGTTGGAAAAGCAGAGAATGCAGTTTGCTAAGGACTTGGAGGTTCAGAGAATGAGGATGTTCATGGACACACAGGTCCAGCTGGAGCGGATCAAGCACGGCAAGCGACCCGGCTCTAATGATATTTATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

311

Amino Acids

34.35

Weight (kDa)

5.24

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 30 - 120 1.6e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 872
AatII GACGTC 1 cut(s) 249
AccBSI CCGCTC 1 cut(s) 886
AccII CGCG 4 cut(s) 84, 159, 416, 506
AclWI GGATC 2 cut(s) 373, 896
AcoI YGGCCR 2 cut(s) 217, 471
AcuI CTGAAG 1 cut(s) 514
AcyI GRCGYC 4 cut(s) 105, 198, 246, 500
AfaI GTAC 2 cut(s) 241, 287
AfiI CCNNNNNNNGG 2 cut(s) 175, 330
AgsI TTSAA 1 cut(s) 721
AjnI CCWGG 2 cut(s) 128, 329
AluBI AGCT 3 cut(s) 151, 880, 930
AluI AGCT 3 cut(s) 151, 880, 930
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 651
AlwI GGATC 2 cut(s) 373, 896
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 7 cut(s) 68, 133, 217, 332, 432, 458, 471
ApeKI GCWGC 3 cut(s) 424, 554, 557
AspA2I CCTAGG 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 69, 133, 874
AsuC2I CCSGG 1 cut(s) 909
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 874
AvrII CCTAGG 1 cut(s) 65
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 2 cut(s) 108, 236
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 411, 541, 544
BccI CCATC 1 cut(s) 787
BceAI ACGGC 9 cut(s) 16, 123, 185, 232, 373, 458, 486, 682, 913
BciT130I CCWGG 2 cut(s) 130, 331
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 1 cut(s) 651
BfaI CTAG 2 cut(s) 66, 931
BfmI CTRYAG 1 cut(s) 312
BglI GCCNNNNNGGC 1 cut(s) 457
BlnI CCTAGG 1 cut(s) 65
Bme1390I CCNGG 3 cut(s) 130, 331, 909
Bme18I GGWCC 1 cut(s) 874
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 3 cut(s) 69, 133, 874
BmiI GGNNCC 2 cut(s) 134, 420
BmrFI CCNGG 3 cut(s) 130, 331, 909
BpiI GAAGAC 2 cut(s) 108, 236
BpmI CTGGAG 2 cut(s) 115, 902
Bpu10I CCTNAGC 1 cut(s) 828
BpuMI CCSGG 1 cut(s) 909
BsaHI GRCGYC 4 cut(s) 105, 198, 246, 500
BsaJI CCNNGG 6 cut(s) 65, 129, 157, 214, 474, 504
BsaWI WCCGGW 1 cut(s) 438
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 330
Bse118I RCCGGY 3 cut(s) 409, 451, 460
Bse1I ACTGG 2 cut(s) 185, 250
BseBI CCWGG 2 cut(s) 130, 331
BseDI CCNNGG 6 cut(s) 65, 129, 157, 214, 474, 504
BseGI GGATG 5 cut(s) 540, 601, 610, 634, 861
BseLI CCNNNNNNNGG 2 cut(s) 175, 330
BseMII CTCAG 2 cut(s) 500, 768
BseNI ACTGG 2 cut(s) 185, 250
BseRI GAGGAG 7 cut(s) 46, 614, 647, 714, 717, 720, 723
BseX3I CGGCCG 1 cut(s) 471
BseXI GCAGC 3 cut(s) 411, 541, 544
Bsh1236I CGCG 4 cut(s) 84, 159, 416, 506
Bsh1285I CGRYCG 5 cut(s) 346, 414, 465, 474, 552
BshFI GGCC 7 cut(s) 70, 135, 219, 334, 434, 460, 473
BsiEI CGRYCG 5 cut(s) 346, 414, 465, 474, 552
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 5 cut(s) 410, 439, 452, 461, 909
BsiWI CGTACG 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 175, 330
BsmAI GTCTC 1 cut(s) 651
BsmI GAATGC 1 cut(s) 822
BsnI GGCC 7 cut(s) 70, 135, 219, 334, 434, 460, 473
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 3 cut(s) 343, 365, 888
BspANI GGCC 7 cut(s) 70, 135, 219, 334, 434, 460, 473
BspCNI CTCAG 2 cut(s) 499, 769
BspFNI CGCG 4 cut(s) 84, 159, 416, 506
BspLI GGNNCC 2 cut(s) 134, 420
BspMAI CTGCAG 1 cut(s) 316
BspPI GGATC 2 cut(s) 373, 896
BsrBI CCGCTC 1 cut(s) 886
BsrFI RCCGGY 3 cut(s) 409, 451, 460
BsrI ACTGG 2 cut(s) 185, 250
BssAI RCCGGY 3 cut(s) 409, 451, 460
BssECI CCNNGG 6 cut(s) 65, 129, 157, 214, 474, 504
BssMI GATC 3 cut(s) 343, 365, 888
BssNI GRCGYC 4 cut(s) 105, 198, 246, 500
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 130, 331
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 4 cut(s) 331, 485, 585, 716
BstACI GRCGYC 4 cut(s) 105, 198, 246, 500
BstAPI GCANNNNNTGC 1 cut(s) 817
BstC8I GCNNGC 3 cut(s) 432, 453, 902
BstDEI CTNAG 3 cut(s) 486, 777, 828
BstDSI CCRYGG 4 cut(s) 157, 214, 474, 504
BstF5I GGATG 5 cut(s) 540, 601, 610, 634, 861
BstFNI CGCG 4 cut(s) 84, 159, 416, 506
BstKTI GATC 3 cut(s) 346, 368, 891
BstMAI GTCTC 1 cut(s) 651
BstMBI GATC 3 cut(s) 343, 365, 888
BstMCI CGRYCG 5 cut(s) 346, 414, 465, 474, 552
BstNI CCWGG 2 cut(s) 130, 331
BstSCI CCNGG 3 cut(s) 128, 329, 907
BstSFI CTRYAG 1 cut(s) 312
BstUI CGCG 4 cut(s) 84, 159, 416, 506
BstV1I GCAGC 3 cut(s) 411, 541, 544
BstV2I GAAGAC 2 cut(s) 108, 236
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BstZI CGGCCG 1 cut(s) 471
BsuRI GGCC 7 cut(s) 70, 135, 219, 334, 434, 460, 473
BtgI CCRYGG 4 cut(s) 157, 214, 474, 504
BtgZI GCGATG 1 cut(s) 527
BtsCI GGATG 5 cut(s) 540, 601, 610, 634, 861
BtsIMutI CAGTG 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 432, 453, 902
Cfr10I RCCGGY 3 cut(s) 409, 451, 460
Cfr13I GGNCC 3 cut(s) 69, 133, 874
Cfr42I CCGCGG 2 cut(s) 160, 507
CseI GACGC 5 cut(s) 113, 206, 241, 362, 489
Csp6I GTAC 2 cut(s) 240, 286
CviAII CATG 2 cut(s) 73, 862
CviQI GTAC 2 cut(s) 240, 286
DdeI CTNAG 3 cut(s) 486, 777, 828
DpnI GATC 3 cut(s) 345, 367, 890
DpnII GATC 3 cut(s) 343, 365, 888
DrdI GACNNNNNNGTC 1 cut(s) 872
DseDI GACNNNNNNGTC 1 cut(s) 872
EaeI YGGCCR 2 cut(s) 217, 471
EagI CGGCCG 1 cut(s) 471
Eam1104I CTCTTC 4 cut(s) 331, 485, 585, 716
EarI CTCTTC 4 cut(s) 331, 485, 585, 716
EciI GGCGGA 4 cut(s) 158, 396, 584, 653
Ecl136II GAGCTC 1 cut(s) 151
EclXI CGGCCG 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 874
Eco52I CGGCCG 1 cut(s) 471
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 514
Eco88I CYCGRG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 128, 329
EcoT14I CCWWGG 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 2 cut(s) 76, 865
FaiI YATR 3 cut(s) 74, 863, 927
FatI CATG 2 cut(s) 72, 861
FokI GGATG 5 cut(s) 547, 608, 617, 641, 868
FriOI GRGCYC 1 cut(s) 153
FspBI CTAG 2 cut(s) 66, 931
GsuI CTGGAG 2 cut(s) 115, 902
HaeIII GGCC 7 cut(s) 70, 135, 219, 334, 434, 460, 473
HapII CCGG 5 cut(s) 410, 439, 452, 461, 909
HgaI GACGC 5 cut(s) 113, 206, 241, 362, 489
Hin1I GRCGYC 4 cut(s) 105, 198, 246, 500
Hin1II CATG 2 cut(s) 76, 865
HincII GTYRAC 2 cut(s) 36, 205
HindII GTYRAC 2 cut(s) 36, 205
HinfI GANTC 4 cut(s) 17, 115, 125, 259
HpaII CCGG 5 cut(s) 410, 439, 452, 461, 909
Hpy166II GTNNAC 2 cut(s) 36, 205
Hpy188I TCNGA 4 cut(s) 365, 489, 765, 846
Hpy188III TCNNGA 5 cut(s) 277, 295, 376, 466, 532
Hpy8I GTNNAC 2 cut(s) 36, 205
HpyAV CCTTC 5 cut(s) 169, 292, 411, 456, 707
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 2 cut(s) 246, 372
HpyCH4V TGCA 3 cut(s) 255, 314, 820
HpyF3I CTNAG 3 cut(s) 486, 777, 828
HpySE526I ACGT 2 cut(s) 246, 372
Hsp92I GRCGYC 4 cut(s) 105, 198, 246, 500
Hsp92II CATG 2 cut(s) 76, 865
KroI GCCGGC 1 cut(s) 451
KroNI GCCGGC 1 cut(s) 453
KspI CCGCGG 2 cut(s) 160, 507
Kzo9I GATC 3 cut(s) 343, 365, 888
LmnI GCTCC 2 cut(s) 96, 883
Lsp1109I GCAGC 3 cut(s) 411, 541, 544
MaeI CTAG 2 cut(s) 66, 931
MaeII ACGT 2 cut(s) 246, 372
MaeIII GTNAC 2 cut(s) 140, 466
MalI GATC 3 cut(s) 345, 367, 890
MbiI CCGCTC 1 cut(s) 886
MboI GATC 3 cut(s) 343, 365, 888
MboII GAAGA 9 cut(s) 113, 241, 292, 318, 502, 520, 602, 623, 733
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 3 cut(s) 49, 264, 538
MlyI GAGTC 2 cut(s) 109, 119
MmeI TCCRAC 1 cut(s) 783
MreI CGCCGGCG 1 cut(s) 451
MroNI GCCGGC 1 cut(s) 451
MspA1I CMGCKG 5 cut(s) 159, 424, 430, 506, 880
MspI CCGG 5 cut(s) 410, 439, 452, 461, 909
MspR9I CCNGG 3 cut(s) 130, 331, 909
Mva1269I GAATGC 1 cut(s) 822
MvaI CCWGG 2 cut(s) 130, 331
MvnI CGCG 4 cut(s) 84, 159, 416, 506
NaeI GCCGGC 1 cut(s) 453
NciI CCSGG 1 cut(s) 909
NdeII GATC 3 cut(s) 343, 365, 888
NgoMIV GCCGGC 1 cut(s) 451
NlaIII CATG 2 cut(s) 76, 865
NlaIV GGNNCC 2 cut(s) 134, 420
NmeAIII GCCGAG 1 cut(s) 524
NmuCI GTSAC 1 cut(s) 466
PaeR7I CTCGAG 1 cut(s) 146
PcsI WCGNNNNNNNCGW 6 cut(s) 198, 348, 369, 471, 582, 585
PctI GAATGC 1 cut(s) 822
PdiI GCCGGC 1 cut(s) 453
PfeI GAWTC 2 cut(s) 17, 259
Pfl23II CGTACG 1 cut(s) 239
PflFI GACNNNGTC 1 cut(s) 200
Ple19I CGATCG 1 cut(s) 346
PleI GAGTC 2 cut(s) 109, 119
PpsI GAGTC 2 cut(s) 109, 119
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 128, 329
PspGI CCWGG 2 cut(s) 128, 329
PspLI CGTACG 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 134, 420
PspPI GGNCC 3 cut(s) 69, 133, 874
PspXI VCTCGAGB 1 cut(s) 146
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 1 cut(s) 365
PsyI GACNNNGTC 1 cut(s) 200
PvuI CGATCG 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 2 cut(s) 241, 287
RsaNI GTAC 2 cut(s) 240, 286
SacI GAGCTC 1 cut(s) 153
SacII CCGCGG 2 cut(s) 160, 507
Sau3AI GATC 3 cut(s) 343, 365, 888
Sau96I GGNCC 3 cut(s) 69, 133, 874
SchI GAGTC 2 cut(s) 109, 119
ScrFI CCNGG 3 cut(s) 130, 331, 909
SduI GDGCHC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 312
Sfr274I CTCGAG 1 cut(s) 146
Sfr303I CCGCGG 2 cut(s) 160, 507
SgrAI CRCCGGYG 1 cut(s) 451
SgrBI CCGCGG 2 cut(s) 160, 507
SinI GGWCC 1 cut(s) 874
SlaI CTCGAG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 3 cut(s) 49, 264, 538
SspMI CTAG 2 cut(s) 66, 931
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 128, 329, 907
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 2 cut(s) 249, 375
TaqI TCGA 7 cut(s) 113, 123, 147, 262, 294, 342, 351
TasI AATT 3 cut(s) 49, 264, 538
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 2 cut(s) 17, 259
TscAI CASTG 1 cut(s) 257
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 3 cut(s) 424, 554, 557
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 3 cut(s) 530, 551, 850
TspGWI ACGGA 2 cut(s) 29, 257
TspRI CASTG 1 cut(s) 257
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 874
XhoI CTCGAG 1 cut(s) 146
XmaJI CCTAGG 1 cut(s) 65
XspI CTAG 2 cut(s) 66, 931
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.