MD05G1300700.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0003314
Physical Location & Seq
Forward (+)
43370606 .. 43373474
2869 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1300700.v1.1.491

Sequence Viewer

Length: 933 bp
ATGGGCGACCTAACGGACCTCCAAACGACGCCGTCCAATGCCACCACCTCCAACCCTCGCCCCATGCCCGTCCGCGAAGACTGCTGGAGCGAGGACGCCACCTCCACTCTCGTCGACGCCTGGGGCCGCCGCTACCTCGAGCTCAACCGCGGGAACCTCCGCCAGAAGGACTGGCAGGAGGTCGCTGACGCCGTCAACGCCCTCCACGGCCACACCAAGAAGACCCACCGGACGGACGTTCAGTGCAAGAACCGAATCGATACAATTAAGAAGAAGTACAAGGTGGAGAAGGCTAGGGTTTCGTCCTCCAACGGAACCCTAACCTCGTCGTGGCCTTTCTTCGAGAGGCTCGACTCCCTCATTGGATCTAATGTCAAGAAGCCGTCTCCTTCGCCTCTCTCGCCTTCGCCGCCGGTCGCCGTTCCGTTGCCTTTGGGGTACCGGAAGACGCCGTCCTCGGCTCCGGTGGTGACGGCTGTGGCGCTTCCGCAGAAGCGGTCGGCTTCGACTGCGGCGCTCGACGAGGGTTTCTTTAGGATGAATTACTCGGCTGTGGCTGCGGCTGCAGCCGCGGGGGCTGAGGACGAGGACGACGAGGACGACGATGAGGACGATGAGGATAACGATGAGGTCGATGAGGTCGATGAGGAGGTTGAGGTGGAGAGGGAGAGGGAGAGGGAGAGCGGAGGCGAGATTGGAGGCGGGGGAGGAGAAGGGTTGAAGAGATTGGCGAGAGCGATTGAGAGGTTCGGAGAGGTGTATCAGAGAGTCGAGGCCGAGAAGTTGAGGCAGATGGTGGAGTTGGAGAAGCAGAGGATCCAATTCGCCAATGAATTGGAGGTAGAGAGGATGAGGATGATCATGGACACGCAGGTCCAGCTCGAACGAATTAAGCACGGCAAGCGATCGGGCTCTAATGATATCTTTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

311

Amino Acids

34.59

Weight (kDa)

4.97

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 27 - 120 6.6e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 872
Acc36I ACCTGC 1 cut(s) 862
Acc65I GGTACC 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 438
AccBSI CCGCTC 1 cut(s) 684
AccI GTMKAC 1 cut(s) 114
AccII CGCG 3 cut(s) 75, 150, 572
AclWI GGATC 3 cut(s) 373, 811, 824
AcoI YGGCCR 1 cut(s) 208
AcyI GRCGYC 5 cut(s) 29, 96, 117, 189, 449
AfaI GTAC 2 cut(s) 278, 440
AfiI CCNNNNNNNGG 3 cut(s) 166, 232, 330
AgsI TTSAA 1 cut(s) 721
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 3 cut(s) 142, 880, 930
AluI AGCT 3 cut(s) 142, 880, 930
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 390
AlwI GGATC 3 cut(s) 373, 811, 824
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 4 cut(s) 124, 208, 332, 774
ApeKI GCWGC 3 cut(s) 557, 563, 566
Asp718I GGTACC 1 cut(s) 438
AspLEI GCGC 2 cut(s) 484, 517
AspS9I GGNCC 3 cut(s) 16, 124, 874
AsuHPI GGTGA 1 cut(s) 481
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 2 cut(s) 16, 874
BamHI GGATCC 1 cut(s) 816
BanI GGYRCC 1 cut(s) 438
BanII GRGCYC 2 cut(s) 144, 914
BbsI GAAGAC 3 cut(s) 84, 227, 452
Bbv12I GWGCWC 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 3 cut(s) 544, 550, 578
BccI CCATC 1 cut(s) 787
BceAI ACGGC 8 cut(s) 16, 176, 223, 367, 404, 436, 489, 913
BciT130I CCWGG 1 cut(s) 121
BclI TGATCA 1 cut(s) 858
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 2 cut(s) 294, 931
BfmI CTRYAG 1 cut(s) 564
BfoI RGCGCY 2 cut(s) 485, 518
BfuAI ACCTGC 1 cut(s) 862
BglI GCCNNNNNGGC 1 cut(s) 575
BisI GCNGC 9 cut(s) 127, 130, 410, 513, 558, 561, 564, 567, 570
BlsI GCNGC 9 cut(s) 128, 131, 411, 514, 559, 562, 565, 568, 571
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 2 cut(s) 16, 874
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 3 cut(s) 16, 124, 874
BmiI GGNNCC 6 cut(s) 125, 155, 316, 440, 462, 818
BmrFI CCNGG 1 cut(s) 121
BpiI GAAGAC 3 cut(s) 84, 227, 452
BpmI CTGGAG 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 579
Bsa29I ATCGAT 1 cut(s) 258
BsaHI GRCGYC 5 cut(s) 29, 96, 117, 189, 449
BsaJI CCNNGG 5 cut(s) 120, 148, 205, 456, 570
BsaWI WCCGGW 3 cut(s) 228, 441, 463
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 232, 330
Bse118I RCCGGY 1 cut(s) 412
Bse1I ACTGG 1 cut(s) 176
BseBI CCWGG 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 5 cut(s) 120, 148, 205, 456, 570
BseGI GGATG 3 cut(s) 543, 855, 861
BseLI CCNNNNNNNGG 3 cut(s) 166, 232, 330
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 2 cut(s) 662, 723
BseXI GCAGC 3 cut(s) 544, 550, 578
Bsh1236I CGCG 3 cut(s) 75, 150, 572
Bsh1285I CGRYCG 3 cut(s) 417, 500, 908
BshFI GGCC 4 cut(s) 126, 210, 334, 776
BshNI GGYRCC 1 cut(s) 438
BshVI ATCGAT 1 cut(s) 258
BsiEI CGRYCG 3 cut(s) 417, 500, 908
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 4 cut(s) 229, 413, 442, 464
BslI CCNNNNNNNGG 3 cut(s) 166, 232, 330
BsmAI GTCTC 1 cut(s) 390
BsmBI CGTCTC 1 cut(s) 390
BsnI GGCC 4 cut(s) 126, 210, 334, 776
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 144, 914
Bsp143I GATC 4 cut(s) 365, 816, 858, 905
BspANI GGCC 4 cut(s) 126, 210, 334, 776
BspCNI CTCAG 1 cut(s) 571
BspDI ATCGAT 1 cut(s) 258
BspFNI CGCG 3 cut(s) 75, 150, 572
BspLI GGNNCC 6 cut(s) 125, 155, 316, 440, 462, 818
BspMAI CTGCAG 1 cut(s) 568
BspMI ACCTGC 1 cut(s) 862
BspPI GGATC 3 cut(s) 373, 811, 824
BspT107I GGYRCC 1 cut(s) 438
BsrBI CCGCTC 1 cut(s) 684
BsrFI RCCGGY 1 cut(s) 412
BsrI ACTGG 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 412
BssECI CCNNGG 5 cut(s) 120, 148, 205, 456, 570
BssMI GATC 4 cut(s) 365, 816, 858, 905
BssNI GRCGYC 5 cut(s) 29, 96, 117, 189, 449
Bst2UI CCWGG 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 716
BstACI GRCGYC 5 cut(s) 29, 96, 117, 189, 449
BstC8I GCNNGC 1 cut(s) 902
BstDEI CTNAG 1 cut(s) 579
BstDSI CCRYGG 3 cut(s) 148, 205, 570
BstF5I GGATG 3 cut(s) 543, 855, 861
BstFNI CGCG 3 cut(s) 75, 150, 572
BstH2I RGCGCY 2 cut(s) 485, 518
BstHHI GCGC 2 cut(s) 484, 517
BstKTI GATC 4 cut(s) 368, 819, 861, 908
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 4 cut(s) 365, 816, 858, 905
BstMCI CGRYCG 3 cut(s) 417, 500, 908
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BstSFI CTRYAG 1 cut(s) 564
BstUI CGCG 3 cut(s) 75, 150, 572
BstV1I GCAGC 3 cut(s) 544, 550, 578
BstV2I GAAGAC 3 cut(s) 84, 227, 452
BstX2I RGATCY 2 cut(s) 365, 816
BstXI CCANNNNNNTGG 1 cut(s) 835
BstYI RGATCY 2 cut(s) 365, 816
Bsu15I ATCGAT 1 cut(s) 258
BsuRI GGCC 4 cut(s) 126, 210, 334, 776
BsuTUI ATCGAT 1 cut(s) 258
BtgI CCRYGG 3 cut(s) 148, 205, 570
BtsCI GGATG 3 cut(s) 543, 855, 861
BtsIMutI CAGTG 1 cut(s) 248
BveI ACCTGC 1 cut(s) 862
Cac8I GCNNGC 1 cut(s) 902
CfoI GCGC 2 cut(s) 484, 517
Cfr10I RCCGGY 1 cut(s) 412
Cfr13I GGNCC 3 cut(s) 16, 124, 874
Cfr42I CCGCGG 2 cut(s) 151, 573
ClaI ATCGAT 1 cut(s) 258
CseI GACGC 5 cut(s) 37, 104, 125, 197, 457
Csp6I GTAC 2 cut(s) 277, 439
CviAII CATG 2 cut(s) 64, 862
CviQI GTAC 2 cut(s) 277, 439
DdeI CTNAG 1 cut(s) 579
DpnI GATC 4 cut(s) 367, 818, 860, 907
DpnII GATC 4 cut(s) 365, 816, 858, 905
DrdI GACNNNNNNGTC 1 cut(s) 872
DseDI GACNNNNNNGTC 1 cut(s) 872
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
EciI GGCGGA 1 cut(s) 149
Ecl136II GAGCTC 1 cut(s) 142
Eco24I GRGCYC 2 cut(s) 144, 914
Eco32I GATATC 1 cut(s) 922
Eco47I GGWCC 2 cut(s) 16, 874
Eco53kI GAGCTC 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 119
EcoRV GATATC 1 cut(s) 922
EcoT38I GRGCYC 2 cut(s) 144, 914
Esp3I CGTCTC 1 cut(s) 390
FaeI CATG 2 cut(s) 67, 865
FaiI YATR 2 cut(s) 65, 863
FatI CATG 2 cut(s) 63, 861
FauI CCCGC 3 cut(s) 143, 565, 695
FbaI TGATCA 1 cut(s) 858
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 9 cut(s) 127, 130, 410, 513, 558, 561, 564, 567, 570
FokI GGATG 3 cut(s) 550, 862, 868
FriOI GRGCYC 2 cut(s) 144, 914
Fsp4HI GCNGC 9 cut(s) 127, 130, 410, 513, 558, 561, 564, 567, 570
FspBI CTAG 2 cut(s) 294, 931
GlaI GCGC 2 cut(s) 483, 516
GluI GCNGC 9 cut(s) 127, 130, 410, 513, 558, 561, 564, 567, 570
GsuI CTGGAG 1 cut(s) 106
HaeII RGCGCY 2 cut(s) 485, 518
HaeIII GGCC 4 cut(s) 126, 210, 334, 776
HapII CCGG 4 cut(s) 229, 413, 442, 464
HgaI GACGC 5 cut(s) 37, 104, 125, 197, 457
HhaI GCGC 2 cut(s) 484, 517
Hin1I GRCGYC 5 cut(s) 29, 96, 117, 189, 449
Hin1II CATG 2 cut(s) 67, 865
Hin6I GCGC 2 cut(s) 482, 515
HinP1I GCGC 2 cut(s) 482, 515
HincII GTYRAC 2 cut(s) 115, 196
HindII GTYRAC 2 cut(s) 115, 196
HinfI GANTC 3 cut(s) 255, 353, 768
HpaII CCGG 4 cut(s) 229, 413, 442, 464
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 2 cut(s) 115, 196
Hpy188I TCNGA 2 cut(s) 752, 765
Hpy188III TCNNGA 2 cut(s) 343, 376
Hpy8I GTNNAC 2 cut(s) 115, 196
Hpy99I CGWCG 7 cut(s) 31, 116, 119, 331, 524, 596, 605
HpyAV CCTTC 5 cut(s) 160, 283, 399, 414, 707
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 246, 566
HpyF3I CTNAG 1 cut(s) 579
HpySE526I ACGT 1 cut(s) 237
Hsp92I GRCGYC 5 cut(s) 29, 96, 117, 189, 449
Hsp92II CATG 2 cut(s) 67, 865
HspAI GCGC 2 cut(s) 482, 515
KpnI GGTACC 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 858
KspI CCGCGG 2 cut(s) 151, 573
Kzo9I GATC 4 cut(s) 365, 816, 858, 905
LmnI GCTCC 2 cut(s) 87, 466
Lsp1109I GCAGC 3 cut(s) 544, 550, 578
MaeI CTAG 2 cut(s) 294, 931
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 469
MalI GATC 4 cut(s) 367, 818, 860, 907
MbiI CCGCTC 1 cut(s) 684
MboI GATC 4 cut(s) 365, 816, 858, 905
MboII GAAGA 6 cut(s) 89, 232, 283, 331, 457, 733
MflI RGATCY 2 cut(s) 365, 816
MhlI GDGCHC 2 cut(s) 144, 914
MluCI AATT 5 cut(s) 264, 541, 821, 833, 888
MlyI GAGTC 2 cut(s) 347, 777
MmeI TCCRAC 3 cut(s) 75, 333, 783
MseI TTAA 2 cut(s) 267, 891
MspA1I CMGCKG 2 cut(s) 150, 572
MspI CCGG 4 cut(s) 229, 413, 442, 464
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 3 cut(s) 75, 150, 572
NdeII GATC 4 cut(s) 365, 816, 858, 905
NlaIII CATG 2 cut(s) 67, 865
NlaIV GGNNCC 6 cut(s) 125, 155, 316, 440, 462, 818
NmeAIII GCCGAG 3 cut(s) 437, 527, 802
NmuCI GTSAC 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 137
PcsI WCGNNNNNNNCGW 8 cut(s) 189, 348, 591, 597, 600, 609, 630, 639
PfeI GAWTC 1 cut(s) 255
PflFI GACNNNGTC 3 cut(s) 31, 191, 451
PkrI GCNGC 9 cut(s) 128, 131, 411, 514, 559, 562, 565, 568, 571
Ple19I CGATCG 1 cut(s) 908
PleI GAGTC 2 cut(s) 347, 776
PpsI GAGTC 2 cut(s) 347, 776
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 6 cut(s) 125, 155, 316, 440, 462, 818
PspPI GGNCC 3 cut(s) 16, 124, 874
PspXI VCTCGAGB 1 cut(s) 137
PstI CTGCAG 1 cut(s) 568
PsuI RGATCY 2 cut(s) 365, 816
PsyI GACNNNGTC 3 cut(s) 31, 191, 451
PvuI CGATCG 1 cut(s) 908
RsaI GTAC 2 cut(s) 278, 440
RsaNI GTAC 2 cut(s) 277, 439
SacI GAGCTC 1 cut(s) 144
SacII CCGCGG 2 cut(s) 151, 573
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 267, 891
SatI GCNGC 9 cut(s) 127, 130, 410, 513, 558, 561, 564, 567, 570
Sau3AI GATC 4 cut(s) 365, 816, 858, 905
Sau96I GGNCC 3 cut(s) 16, 124, 874
SchI GAGTC 2 cut(s) 347, 777
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 2 cut(s) 144, 914
SfcI CTRYAG 1 cut(s) 564
Sfr274I CTCGAG 1 cut(s) 137
Sfr303I CCGCGG 2 cut(s) 151, 573
SgrBI CCGCGG 2 cut(s) 151, 573
SgrDI CGTCGACG 1 cut(s) 113
SinI GGWCC 2 cut(s) 16, 874
SlaI CTCGAG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 5 cut(s) 264, 541, 821, 833, 888
SspMI CTAG 2 cut(s) 294, 931
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 119
TaiI ACGT 1 cut(s) 240
TasI AATT 5 cut(s) 264, 541, 821, 833, 888
TatI WGTACW 1 cut(s) 276
TauI GCSGC 6 cut(s) 129, 132, 412, 515, 563, 572
TfiI GAWTC 1 cut(s) 255
Tru1I TTAA 2 cut(s) 267, 891
Tru9I TTAA 2 cut(s) 267, 891
TscAI CASTG 1 cut(s) 248
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 3 cut(s) 557, 563, 566
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 2 cut(s) 554, 846
TspGWI ACGGA 4 cut(s) 29, 248, 327, 414
TspRI CASTG 1 cut(s) 248
Tth111I GACNNNGTC 3 cut(s) 31, 191, 451
VpaK11BI GGWCC 2 cut(s) 16, 874
XhoI CTCGAG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 2 cut(s) 294, 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.