MD10G1279600.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0003314
Physical Location & Seq
Forward (+)
37065041 .. 37065914
874 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1279600.v1.1.491

Sequence Viewer

Length: 807 bp
ATGGGCGACCTAACCGACCTCCAAATAACGCCGTTCAATGCCGGCACCACCGCCTCCACCCCGCCCTCCTCCAAACCTCGGCCCATGCCCGTCCGCGAAGACTGCTGGAGCGAGGACGCCACGTCCACTCTCGTCGACGCCTGGGGCCGCCGCTACATCGAGCTTAACCGCGGGAACCTCCGTCAGAAGGACTGGCAGGAGGTCGCTGACGCCGTCAACGCCCTCCACGGCCACACCAAGAAGACCCACCGGACGGACGTCCAGTGCAAGAACCGAATCGATACTATCAAGAAGAAGTACAAGGTGGAGAAGGTTAGGGTTTCGTCCTCCAACGGAACCCTAACCTCGTCGTGGCCTTTCTTCGAGAGACTCGACGCTCTCATCGGATCTAATGTCAAGAAGGTGTCTCCTTCGTCTCCTTCGCCTCAATCGCCTTCGCTGCCGGTCGCCGTTCCGTTGCCTTTGGGGTACCGGAAGACGCCGTCCTCGGCTCCGGTGGTGACGGCTGTGGCGCTTCCGCAGAAGCGGTCGGCATCGACTGCGGCGCTCGACGAGGGTTTCTTCAGGATGAATTACTCGGCCGTGGCTGCGGCTGCGGCTGCAGCCGCTGGGGCTGAGGATGAGGACGATGAGGATGAGGATGAGGACGATGAGGATAACGATGAGGCCGATGAGGAGGTTGAGATGGCGAGGGAGAGCGGAGGAGAGGTTGGAGGCGGTGGAGGAGGAGGAGAAGGGTTGAAGAGATTGGCGAGAGCGATTGAGAGCTTCGGGGAGGTGTATCAGAGAGATCCAATTCGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

269

Amino Acids

28.96

Weight (kDa)

4.92

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 34 - 127 2.4e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
Acc65I GGTACC 1 cut(s) 468
AccB1I GGYRCC 2 cut(s) 44, 468
AccBSI CCGCTC 1 cut(s) 699
AccI GTMKAC 1 cut(s) 135
AccII CGCG 2 cut(s) 96, 171
AclWI GGATC 2 cut(s) 394, 785
AcoI YGGCCR 2 cut(s) 229, 579
AcuI CTGAAG 1 cut(s) 547
AcyI GRCGYC 5 cut(s) 117, 138, 210, 258, 479
AfaI GTAC 2 cut(s) 299, 470
AfiI CCNNNNNNNGG 4 cut(s) 78, 187, 253, 351
AgsI TTSAA 2 cut(s) 37, 742
AhdI GACNNNNNGTC 1 cut(s) 121
AjiI CACGTC 1 cut(s) 123
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 2 cut(s) 163, 768
AluI AGCT 2 cut(s) 163, 768
Alw26I GTCTC 3 cut(s) 361, 411, 420
AlwI GGATC 2 cut(s) 394, 785
AlwNI CAGNNNCTG 1 cut(s) 608
AoxI GGCC 6 cut(s) 80, 145, 229, 353, 579, 666
ApeKI GCWGC 5 cut(s) 439, 587, 593, 599, 602
Asp718I GGTACC 1 cut(s) 468
AspLEI GCGC 2 cut(s) 514, 547
AspS9I GGNCC 2 cut(s) 81, 145
AsuHPI GGTGA 1 cut(s) 511
BanI GGYRCC 2 cut(s) 44, 468
BbsI GAAGAC 3 cut(s) 105, 248, 482
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 5 cut(s) 426, 574, 580, 586, 614
BccI CCATC 1 cut(s) 679
BceAI ACGGC 7 cut(s) 16, 197, 244, 434, 466, 519, 566
BciT130I CCWGG 1 cut(s) 142
BcoDI GTCTC 3 cut(s) 361, 411, 420
BfmI CTRYAG 1 cut(s) 600
BfoI RGCGCY 2 cut(s) 515, 548
BglI GCCNNNNNGGC 1 cut(s) 611
Bme1390I CCNGG 1 cut(s) 142
BmeRI GACNNNNNGTC 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 123
BmgT120I GGNCC 2 cut(s) 81, 145
BmiI GGNNCC 6 cut(s) 46, 146, 176, 337, 470, 492
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 542
BoxI GACNNNNGTC 1 cut(s) 257
BpiI GAAGAC 3 cut(s) 105, 248, 482
BpmI CTGGAG 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 615
Bsa29I ATCGAT 1 cut(s) 279
BsaHI GRCGYC 5 cut(s) 117, 138, 210, 258, 479
BsaJI CCNNGG 6 cut(s) 77, 141, 169, 226, 486, 582
BsaWI WCCGGW 3 cut(s) 249, 471, 493
BsaXI ACNNNNNCTCC 2 cut(s) 693, 723
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 187, 253, 351
Bse118I RCCGGY 2 cut(s) 41, 442
Bse1I ACTGG 2 cut(s) 197, 262
BseBI CCWGG 1 cut(s) 142
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 6 cut(s) 77, 141, 169, 226, 486, 582
BseGI GGATG 4 cut(s) 573, 625, 640, 646
BseLI CCNNNNNNNGG 4 cut(s) 78, 187, 253, 351
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 2 cut(s) 197, 262
BseRI GAGGAG 6 cut(s) 58, 689, 717, 738, 741, 744
BseX3I CGGCCG 1 cut(s) 579
BseXI GCAGC 5 cut(s) 426, 574, 580, 586, 614
BseYI CCCAGC 1 cut(s) 608
Bsh1236I CGCG 2 cut(s) 96, 171
Bsh1285I CGRYCG 3 cut(s) 447, 530, 582
BshFI GGCC 6 cut(s) 82, 147, 231, 355, 581, 668
BshNI GGYRCC 2 cut(s) 44, 468
BshVI ATCGAT 1 cut(s) 279
BsiEI CGRYCG 3 cut(s) 447, 530, 582
BsiSI CCGG 5 cut(s) 42, 250, 443, 472, 494
BslI CCNNNNNNNGG 4 cut(s) 78, 187, 253, 351
BsmAI GTCTC 3 cut(s) 361, 411, 420
BsmBI CGTCTC 1 cut(s) 420
BsnI GGCC 6 cut(s) 82, 147, 231, 355, 581, 668
Bsp143I GATC 2 cut(s) 386, 790
BspANI GGCC 6 cut(s) 82, 147, 231, 355, 581, 668
BspCNI CTCAG 1 cut(s) 607
BspDI ATCGAT 1 cut(s) 279
BspFNI CGCG 2 cut(s) 96, 171
BspLI GGNNCC 6 cut(s) 46, 146, 176, 337, 470, 492
BspMAI CTGCAG 1 cut(s) 604
BspPI GGATC 2 cut(s) 394, 785
BspT107I GGYRCC 2 cut(s) 44, 468
BsrBI CCGCTC 1 cut(s) 699
BsrFI RCCGGY 2 cut(s) 41, 442
BsrI ACTGG 2 cut(s) 197, 262
BssAI RCCGGY 2 cut(s) 41, 442
BssECI CCNNGG 6 cut(s) 77, 141, 169, 226, 486, 582
BssMI GATC 2 cut(s) 386, 790
BssNI GRCGYC 5 cut(s) 117, 138, 210, 258, 479
Bst2UI CCWGG 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 737
BstACI GRCGYC 5 cut(s) 117, 138, 210, 258, 479
BstAPI GCANNNNNTGC 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 1 cut(s) 615
BstDSI CCRYGG 3 cut(s) 169, 226, 582
BstF5I GGATG 4 cut(s) 573, 625, 640, 646
BstFNI CGCG 2 cut(s) 96, 171
BstH2I RGCGCY 2 cut(s) 515, 548
BstHHI GCGC 2 cut(s) 514, 547
BstKTI GATC 2 cut(s) 389, 793
BstMAI GTCTC 3 cut(s) 361, 411, 420
BstMBI GATC 2 cut(s) 386, 790
BstMCI CGRYCG 3 cut(s) 447, 530, 582
BstNI CCWGG 1 cut(s) 142
BstPAI GACNNNNGTC 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 600
BstUI CGCG 2 cut(s) 96, 171
BstV1I GCAGC 5 cut(s) 426, 574, 580, 586, 614
BstV2I GAAGAC 3 cut(s) 105, 248, 482
BstX2I RGATCY 2 cut(s) 386, 790
BstYI RGATCY 2 cut(s) 386, 790
BstZI CGGCCG 1 cut(s) 579
Bsu15I ATCGAT 1 cut(s) 279
BsuRI GGCC 6 cut(s) 82, 147, 231, 355, 581, 668
BsuTUI ATCGAT 1 cut(s) 279
BtgI CCRYGG 3 cut(s) 169, 226, 582
BtrI CACGTC 1 cut(s) 123
BtsCI GGATG 4 cut(s) 573, 625, 640, 646
BtsIMutI CAGTG 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 608
CfoI GCGC 2 cut(s) 514, 547
Cfr10I RCCGGY 2 cut(s) 41, 442
Cfr13I GGNCC 2 cut(s) 81, 145
Cfr42I CCGCGG 1 cut(s) 172
ClaI ATCGAT 1 cut(s) 279
CseI GACGC 5 cut(s) 125, 146, 218, 383, 487
Csp6I GTAC 2 cut(s) 298, 469
CviAII CATG 1 cut(s) 85
CviQI GTAC 2 cut(s) 298, 469
DdeI CTNAG 1 cut(s) 615
DpnI GATC 2 cut(s) 388, 792
DpnII GATC 2 cut(s) 386, 790
DriI GACNNNNNGTC 1 cut(s) 121
EaeI YGGCCR 2 cut(s) 229, 579
EagI CGGCCG 1 cut(s) 579
Eam1104I CTCTTC 1 cut(s) 737
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 737
EclXI CGGCCG 1 cut(s) 579
Eco52I CGGCCG 1 cut(s) 579
Eco57I CTGAAG 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 420
FaeI CATG 1 cut(s) 88
FaiI YATR 1 cut(s) 86
FatI CATG 1 cut(s) 84
FauI CCCGC 2 cut(s) 69, 164
FblI GTMKAC 1 cut(s) 135
FokI GGATG 4 cut(s) 580, 632, 647, 653
GlaI GCGC 2 cut(s) 513, 546
GsaI CCCAGC 1 cut(s) 612
GsuI CTGGAG 1 cut(s) 127
HaeII RGCGCY 2 cut(s) 515, 548
HaeIII GGCC 6 cut(s) 82, 147, 231, 355, 581, 668
HapII CCGG 5 cut(s) 42, 250, 443, 472, 494
HgaI GACGC 5 cut(s) 125, 146, 218, 383, 487
HhaI GCGC 2 cut(s) 514, 547
Hin1I GRCGYC 5 cut(s) 117, 138, 210, 258, 479
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 2 cut(s) 512, 545
HinP1I GCGC 2 cut(s) 512, 545
HincII GTYRAC 2 cut(s) 136, 217
HindII GTYRAC 2 cut(s) 136, 217
HinfI GANTC 2 cut(s) 276, 369
HpaII CCGG 5 cut(s) 42, 250, 443, 472, 494
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 3 cut(s) 126, 136, 217
Hpy188I TCNGA 3 cut(s) 186, 386, 786
Hpy188III TCNNGA 4 cut(s) 289, 364, 397, 565
Hpy8I GTNNAC 3 cut(s) 126, 136, 217
Hpy99I CGWCG 5 cut(s) 137, 140, 352, 377, 554
HpyAV CCTTC 7 cut(s) 181, 304, 394, 420, 429, 444, 728
HpyCH4IV ACGT 2 cut(s) 122, 258
HpyCH4V TGCA 2 cut(s) 267, 602
HpyF3I CTNAG 1 cut(s) 615
HpySE526I ACGT 2 cut(s) 122, 258
Hsp92I GRCGYC 5 cut(s) 117, 138, 210, 258, 479
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 2 cut(s) 512, 545
KpnI GGTACC 1 cut(s) 472
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
KspI CCGCGG 1 cut(s) 172
Kzo9I GATC 2 cut(s) 386, 790
LmnI GCTCC 2 cut(s) 108, 496
Lsp1109I GCAGC 5 cut(s) 426, 574, 580, 586, 614
LweI GCATC 1 cut(s) 542
MaeII ACGT 2 cut(s) 122, 258
MaeIII GTNAC 1 cut(s) 499
MalI GATC 2 cut(s) 388, 792
MbiI CCGCTC 1 cut(s) 699
MboI GATC 2 cut(s) 386, 790
MboII GAAGA 7 cut(s) 110, 253, 304, 352, 487, 553, 754
MflI RGATCY 2 cut(s) 386, 790
MluCI AATT 2 cut(s) 571, 795
MlyI GAGTC 1 cut(s) 363
MmeI TCCRAC 2 cut(s) 354, 691
MroNI GCCGGC 1 cut(s) 41
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 2 cut(s) 171, 608
MspI CCGG 5 cut(s) 42, 250, 443, 472, 494
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 2 cut(s) 96, 171
NaeI GCCGGC 1 cut(s) 43
NdeII GATC 2 cut(s) 386, 790
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 6 cut(s) 46, 146, 176, 337, 470, 492
NmeAIII GCCGAG 3 cut(s) 58, 467, 557
NmuCI GTSAC 1 cut(s) 499
PcsI WCGNNNNNNNCGW 3 cut(s) 210, 369, 666
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 276
PflFI GACNNNGTC 2 cut(s) 212, 481
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
PshAI GACNNNNGTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 608
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 6 cut(s) 46, 146, 176, 337, 470, 492
PspPI GGNCC 2 cut(s) 81, 145
PstI CTGCAG 1 cut(s) 604
PstNI CAGNNNCTG 1 cut(s) 608
PsuI RGATCY 2 cut(s) 386, 790
PsyI GACNNNGTC 2 cut(s) 212, 481
RsaI GTAC 2 cut(s) 299, 470
RsaNI GTAC 2 cut(s) 298, 469
SacII CCGCGG 1 cut(s) 172
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 165
Sau3AI GATC 2 cut(s) 386, 790
Sau96I GGNCC 2 cut(s) 81, 145
SchI GAGTC 1 cut(s) 363
ScrFI CCNGG 1 cut(s) 142
SfaNI GCATC 1 cut(s) 542
SfcI CTRYAG 1 cut(s) 600
Sfr303I CCGCGG 1 cut(s) 172
SgrBI CCGCGG 1 cut(s) 172
SgrDI CGTCGACG 1 cut(s) 134
Sse9I AATT 2 cut(s) 571, 795
StyD4I CCNGG 1 cut(s) 140
TaiI ACGT 2 cut(s) 125, 261
TaqI TCGA 7 cut(s) 135, 159, 279, 363, 372, 536, 549
TasI AATT 2 cut(s) 571, 795
TatI WGTACW 1 cut(s) 297
TauI GCSGC 6 cut(s) 150, 153, 545, 593, 599, 608
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 5 cut(s) 439, 587, 593, 599, 602
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 1 cut(s) 584
TspGWI ACGGA 4 cut(s) 170, 269, 348, 444
TspRI CASTG 1 cut(s) 269
Tth111I GACNNNGTC 2 cut(s) 212, 481
XmiI GTMKAC 1 cut(s) 135
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.