Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005101

Physical Location & Seq

Genomic Coordinates Forward (+)

22160815 .. 22162867

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGAGGCGAAAACCAGCGGACCTAAGCAAATTCAGCCATCAACACCGGCTCCTCCGCCTTCAACGCGGCGGCCAAGAGTTAGAGAAGTAAGTTCCAGATTCATGTCTCCGGTTACTTCATCCTCTTCCTCCGCCGGAGATCTCCACTCTTTGACTTGTAATTCTCCAAAGCAGCACCACCTTCAACACCACCAGATTCAACGCTCTGTTTCTGCTCAGAGACTTAGACGTCAGTTAAAAATGGCAGACGGAGATGAGAATCGCTCATCAGAGACGGCGGCGCGTAGCCTAGACTCGCCTTTTACACTCTCACAAAGCCGAAAATCATCGAAACCAAGTCACTTGAAGCCGCTCAACGAGAATTCTCACCGGCTCGAAACTCCTACACCAATGGTTCCTCCTCCACCGTCTAGATCACGGCTAAGCCAACAAAGATTACCAACTGCAACGAGACTTCTCCAACTAAGCGGCATATCAGCCTGTTATGAGAAAGAAGGAATCATCAACATTCAGGAGAAACCTAAATCTAACGGCTCAGATCAGTTTCCAACACTTTCTTGTAGAACTCATCTTAAAGTTTTCAACAATCCTGTACCTTCTTCTCTTAATCGATCTGTGAGTTCACCATCTTCAAGCTGTAACGTTCGTGAGAGCAGTTCGTTTTCACGTTTAGGCTTGCCATTGCCTCCAATGGCACCCAAGGTTCCAGCGGATACTAAAAAACAGAGGAAGGTTACAGAGCAATTGGAAGATGTGCATTCTCTGAAACTGCTCCACAATCGTTACCTCCAATGGAGATTTGCAAACGCCAATGCACAAGTGAAGACTCAAACTCATAAAACACAAACTGAGACCATGATCCATTCCTTTGGTTCCAAGATATCAGAATTACATGATTCTGTGCAAAGGAAACGCATAGAGCTTCAACGTTTATTGAAAACTAAAGCTCTTCTCGCGATTACAGAATCTCAAACTCCATGTTTGGAGCAATGGTCTGCTATTGAAGAAGAGTATTCGACTTCGGTGTCACAAACAATCCAAGCTTTTTCCAATGCTTCATTACGGCTTCCACTCGATGGGGATATCATGGTTGATTCTAAACAGTTAGGAGATGGACTTGTGGCTGCTTCAAAGATTGTTGACGGCATTACACAAAATGTTGGAAACTATATGCCAAAGGCAAAGGAGATGGAGAGTTTGTTGTCAGAATTAACAAGAGTGGCTAGAAGTGAAAGATCATTGACAGAAAATTGCGTTGTGGCTCTTCTTAAAACGCAAGCTTCACAAGTACTCAACCTTTCTTTACATAAATTGAAGAATGTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0005880 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007349 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010342 GO:0015630 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

442

Amino Acids

49.07

Weight (kDa)

9.94

Isoelectric Point (pI)

67.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QWRF	PF04484	94 - 414	4.6e-45	QWRF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44190 AT3G60000 AT3G60000
fragaria_vesca	FvH4_3g00020 FvH4_3g00020 FvH4_3g00020 FvH4_3g00020
malus_domestica	MD00G1208400.v1.1 MD00G1208500.v1.1 MD10G1342500.v1.1
prunus_persica	Prupe.4G000100_v2.0.a1 Prupe.4G000100_v2.0.a1 Prupe.4G000100_v2.0.a1 Prupe.4G000100_v2.0.a1 Prupe.4G000100_v2.0.a1
pyrus_communis	pycom10g29180
rosa_chinensis	RchiOBHm_Chr5g0000021
rosa_laevigata	RLG00000030833
rosa_multiflora	Rmu_co8262249.1_g000001 Rmu_sc0007644.1_g000013
rosa_roxburghii	Rroxscaffold_1G00076040
rosa_rugosa	Rorug04G0380400.1 Rorug04G0380500 Rorug04G0380600 Rorug04G0380700
rosa_samantha	Rh5AG000300 Rh5BG001500 Rh5CG000300 Rh5DG000300
rosa_wichuraiana	Rw5G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	228, 1024
AatII	GACGTC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	694
AccB7I	CCANNNNNTGG	1 cut(s)	1076
AccBSI	CCGCTC	1 cut(s)	352
AccII	CGCG	3 cut(s)	67, 283, 956
AciI	CCGC	9 cut(s)	18, 56, 67, 70, 132, 278, 350, 468, 710
AclI	AACGTT	2 cut(s)	642, 928
AclWI	GGATC	1 cut(s)	853
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	30, 361
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	2 cut(s)	594, 1290
AfiI	CCNNNNNNNGG	1 cut(s)	1076
AluBI	AGCT	5 cut(s)	636, 922, 947, 1043, 1280
AluI	AGCT	5 cut(s)	636, 922, 947, 1043, 1280
Alw26I	GTCTC	5 cut(s)	111, 214, 266, 445, 845
AlwI	GGATC	1 cut(s)	853
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	2 cut(s)	172, 1124
ApoI	RAATTY	2 cut(s)	30, 361
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	359, 615
AvaII	GGWCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	694
BbsI	GAAGAC	1 cut(s)	830
BbvI	GCAGC	2 cut(s)	184, 1111
BccI	CCATC	5 cut(s)	46, 634, 1070, 1106, 1183
BceAI	ACGGC	5 cut(s)	291, 434, 547, 1079, 1159
BciVI	GTATCC	1 cut(s)	706
BcoDI	GTCTC	5 cut(s)	111, 214, 266, 445, 845
BfaI	CTAG	3 cut(s)	290, 411, 1224
BfuI	GTATCC	1 cut(s)	706
BglII	AGATCT	1 cut(s)	139
BisI	GCNGC	7 cut(s)	68, 71, 173, 279, 350, 469, 1125
BlpI	GCTNAGC	1 cut(s)	422
BlsI	GCNGC	7 cut(s)	69, 72, 174, 280, 351, 470, 1126
BmcAI	AGTACT	1 cut(s)	1290
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	5 cut(s)	51, 396, 696, 705, 874
BpiI	GAAGAC	1 cut(s)	830
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
Bpu10I	CCTNAGC	1 cut(s)	24
Bpu1102I	GCTNAGC	1 cut(s)	422
Bsa29I	ATCGAT	1 cut(s)	610
BsaBI	GATNNNNATC	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	845
BsaJI	CCNNGG	1 cut(s)	699
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	6 cut(s)	34, 64, 977, 1007, 1184, 1214
Bsc4I	CCNNNNNNNGG	1 cut(s)	1076
Bse118I	RCCGGY	2 cut(s)	46, 369
Bse3DI	GCAATG	2 cut(s)	680, 995
Bse8I	GATNNNNATC	1 cut(s)	258
BseCI	ATCGAT	1 cut(s)	610
BseDI	CCNNGG	1 cut(s)	699
BseGI	GGATG	1 cut(s)	119
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	1076
BseMI	GCAATG	2 cut(s)	680, 995
BseMII	CTCAG	3 cut(s)	230, 549, 840
BseRI	GAGGAG	2 cut(s)	42, 390
BseXI	GCAGC	2 cut(s)	184, 1111
Bsh1236I	CGCG	3 cut(s)	67, 283, 956
BshFI	GGCC	1 cut(s)	73
BshNI	GGYRCC	1 cut(s)	694
BshVI	ATCGAT	1 cut(s)	610
BsiSI	CCGG	4 cut(s)	47, 110, 135, 370
BslI	CCNNNNNNNGG	1 cut(s)	1076
BsmAI	GTCTC	5 cut(s)	111, 214, 266, 445, 845
BsmBI	CGTCTC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	845
Bsp143I	GATC	6 cut(s)	139, 413, 538, 611, 858, 1235
Bsp1720I	GCTNAGC	1 cut(s)	422
Bsp68I	TCGCGA	1 cut(s)	956
BspACI	CCGC	9 cut(s)	18, 56, 67, 70, 132, 278, 350, 468, 710
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	3 cut(s)	229, 548, 841
BspDI	ATCGAT	1 cut(s)	610
BspFNI	CGCG	3 cut(s)	67, 283, 956
BspLI	GGNNCC	5 cut(s)	51, 396, 696, 705, 874
BspPI	GGATC	1 cut(s)	853
BspQI	GCTCTTC	2 cut(s)	954, 1269
BspT107I	GGYRCC	1 cut(s)	694
BspTNI	GGTCTC	1 cut(s)	845
BsrBI	CCGCTC	1 cut(s)	352
BsrDI	GCAATG	2 cut(s)	680, 995
BsrFI	RCCGGY	2 cut(s)	46, 369
BssAI	RCCGGY	2 cut(s)	46, 369
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	6 cut(s)	139, 413, 538, 611, 858, 1235
BssNI	GRCGYC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	699
Bst4CI	ACNGT	2 cut(s)	408, 1104
Bst6I	CTCTTC	4 cut(s)	130, 954, 1002, 1269
BstACI	GRCGYC	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	677, 1278
BstDEI	CTNAG	7 cut(s)	24, 216, 224, 422, 464, 535, 849
BstF5I	GGATG	1 cut(s)	119
BstFNI	CGCG	3 cut(s)	67, 283, 956
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	6 cut(s)	142, 416, 541, 614, 861, 1238
BstMAI	GTCTC	5 cut(s)	111, 214, 266, 445, 845
BstMBI	GATC	6 cut(s)	139, 413, 538, 611, 858, 1235
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 64, 953
BstUI	CGCG	3 cut(s)	67, 283, 956
BstV1I	GCAGC	2 cut(s)	184, 1111
BstV2I	GAAGAC	1 cut(s)	830
BstX2I	RGATCY	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	869
BstYI	RGATCY	1 cut(s)	139
Bsu15I	ATCGAT	1 cut(s)	610
BsuI	GTATCC	1 cut(s)	706
BsuRI	GGCC	1 cut(s)	73
BsuTUI	ATCGAT	1 cut(s)	610
BtsCI	GGATG	1 cut(s)	119
BtuMI	TCGCGA	1 cut(s)	956
Cac8I	GCNNGC	2 cut(s)	677, 1278
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	2 cut(s)	46, 369
Cfr13I	GGNCC	1 cut(s)	20
ClaI	ATCGAT	1 cut(s)	610
Csp6I	GTAC	2 cut(s)	593, 1289
CviAII	CATG	5 cut(s)	103, 856, 893, 978, 1087
CviQI	GTAC	2 cut(s)	593, 1289
DdeI	CTNAG	7 cut(s)	24, 216, 224, 422, 464, 535, 849
DpnI	GATC	6 cut(s)	141, 415, 540, 613, 860, 1237
DpnII	GATC	6 cut(s)	139, 413, 538, 611, 858, 1235
DrdI	GACNNNNNNGTC	2 cut(s)	228, 1024
DseDI	GACNNNNNNGTC	2 cut(s)	228, 1024
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	4 cut(s)	130, 954, 1002, 1269
EarI	CTCTTC	4 cut(s)	130, 954, 1002, 1269
EciI	GGCGGA	2 cut(s)	45, 121
Eco130I	CCWWGG	1 cut(s)	699
Eco31I	GGTCTC	1 cut(s)	845
Eco32I	GATATC	2 cut(s)	882, 1084
Eco47I	GGWCC	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	361
EcoRV	GATATC	2 cut(s)	882, 1084
EcoT14I	CCWWGG	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	699
Esp3I	CGTCTC	1 cut(s)	266
FaeI	CATG	5 cut(s)	106, 859, 896, 981, 1090
FatI	CATG	5 cut(s)	102, 855, 892, 977, 1086
Fnu4HI	GCNGC	7 cut(s)	68, 71, 173, 279, 350, 469, 1125
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	7 cut(s)	68, 71, 173, 279, 350, 469, 1125
FspBI	CTAG	3 cut(s)	290, 411, 1224
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	7 cut(s)	68, 71, 173, 279, 350, 469, 1125
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	4 cut(s)	47, 110, 135, 370
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	5 cut(s)	106, 859, 896, 981, 1090
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	1141
HindII	GTYRAC	1 cut(s)	1141
HindIII	AAGCTT	2 cut(s)	1041, 1278
HinfI	GANTC	9 cut(s)	99, 196, 259, 293, 498, 826, 896, 965, 1094
HpaII	CCGG	4 cut(s)	47, 110, 135, 370
HphI	GGTGA	2 cut(s)	359, 615
Hpy166II	GTNNAC	2 cut(s)	623, 1141
Hpy188I	TCNGA	6 cut(s)	219, 271, 538, 765, 886, 1207
Hpy188III	TCNNGA	5 cut(s)	96, 411, 512, 647, 955
Hpy8I	GTNNAC	2 cut(s)	623, 1141
HpyAV	CCTTC	5 cut(s)	69, 191, 488, 606, 724
HpyCH4III	ACNGT	2 cut(s)	408, 1104
HpyCH4IV	ACGT	4 cut(s)	229, 642, 667, 928
HpyCH4V	TGCA	5 cut(s)	446, 757, 803, 815, 904
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 64, 953
HpyF3I	CTNAG	7 cut(s)	24, 216, 224, 422, 464, 535, 849
HpySE526I	ACGT	4 cut(s)	229, 642, 667, 928
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	5 cut(s)	106, 859, 896, 981, 1090
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	6 cut(s)	139, 413, 538, 611, 858, 1235
LguI	GCTCTTC	2 cut(s)	954, 1269
LmnI	GCTCC	3 cut(s)	55, 777, 985
Lsp1109I	GCAGC	2 cut(s)	184, 1111
MaeI	CTAG	3 cut(s)	290, 411, 1224
MaeII	ACGT	4 cut(s)	229, 642, 667, 928
MaeIII	GTNAC	6 cut(s)	112, 338, 638, 733, 782, 1026
MalI	GATC	6 cut(s)	141, 415, 540, 613, 860, 1237
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	6 cut(s)	139, 413, 538, 611, 858, 1235
MfeI	CAATTG	1 cut(s)	743
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	8 cut(s)	30, 160, 361, 743, 887, 1208, 1249, 1310
MlyI	GAGTC	2 cut(s)	287, 820
MmeI	TCCRAC	3 cut(s)	484, 572, 1141
MnlI	CCTC	8 cut(s)	63, 133, 139, 408, 411, 696, 720, 797
MseI	TTAA	5 cut(s)	236, 573, 606, 1211, 1269
MspA1I	CMGCKG	2 cut(s)	18, 710
MspI	CCGG	4 cut(s)	47, 110, 135, 370
MunI	CAATTG	1 cut(s)	743
Mva1269I	GAATGC	1 cut(s)	757
MvnI	CGCG	3 cut(s)	67, 283, 956
MwoI	GCNNNNNNNGC	3 cut(s)	34, 64, 953
NdeII	GATC	6 cut(s)	139, 413, 538, 611, 858, 1235
NlaIII	CATG	5 cut(s)	106, 859, 896, 981, 1090
NlaIV	GGNNCC	5 cut(s)	51, 396, 696, 705, 874
NmuCI	GTSAC	2 cut(s)	338, 1026
NruI	TCGCGA	1 cut(s)	956
PciSI	GCTCTTC	2 cut(s)	954, 1269
PctI	GAATGC	1 cut(s)	757
PfeI	GAWTC	7 cut(s)	99, 196, 259, 498, 896, 965, 1094
PflMI	CCANNNNNTGG	1 cut(s)	1076
PkrI	GCNGC	7 cut(s)	69, 72, 174, 280, 351, 470, 1126
PleI	GAGTC	2 cut(s)	287, 820
PpsI	GAGTC	2 cut(s)	287, 820
Psp1406I	AACGTT	2 cut(s)	642, 928
PspN4I	GGNNCC	5 cut(s)	51, 396, 696, 705, 874
PspPI	GGNCC	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	139
RruI	TCGCGA	1 cut(s)	956
RsaI	GTAC	2 cut(s)	594, 1290
RsaNI	GTAC	2 cut(s)	593, 1289
SapI	GCTCTTC	2 cut(s)	954, 1269
SaqAI	TTAA	5 cut(s)	236, 573, 606, 1211, 1269
SatI	GCNGC	7 cut(s)	68, 71, 173, 279, 350, 469, 1125
Sau3AI	GATC	6 cut(s)	139, 413, 538, 611, 858, 1235
Sau96I	GGNCC	1 cut(s)	20
ScaI	AGTACT	1 cut(s)	1290
SchI	GAGTC	2 cut(s)	287, 820
SinI	GGWCC	1 cut(s)	20
Sse9I	AATT	8 cut(s)	30, 160, 361, 743, 887, 1208, 1249, 1310
SsiI	CCGC	9 cut(s)	18, 56, 67, 70, 132, 278, 350, 468, 710
SspMI	CTAG	3 cut(s)	290, 411, 1224
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	2 cut(s)	408, 1104
TaiI	ACGT	4 cut(s)	232, 645, 670, 931
TaqI	TCGA	5 cut(s)	329, 375, 610, 1016, 1074
TasI	AATT	8 cut(s)	30, 160, 361, 743, 887, 1208, 1249, 1310
TatI	WGTACW	1 cut(s)	1288
TauI	GCSGC	5 cut(s)	70, 73, 281, 352, 471
TfiI	GAWTC	7 cut(s)	99, 196, 259, 498, 896, 965, 1094
Tru1I	TTAA	5 cut(s)	236, 573, 606, 1211, 1269
Tru9I	TTAA	5 cut(s)	236, 573, 606, 1211, 1269
TseFI	GTSAC	2 cut(s)	338, 1026
TseI	GCWGC	2 cut(s)	172, 1124
Tsp45I	GTSAC	2 cut(s)	338, 1026
TspDTI	ATGAA	3 cut(s)	91, 108, 1047
TspGWI	ACGGA	1 cut(s)	264
Van91I	CCANNNNNTGG	1 cut(s)	1076
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	2 cut(s)	30, 361
XbaI	TCTAGA	1 cut(s)	410
XspI	CTAG	3 cut(s)	290, 411, 1224
ZraI	GACGTC	1 cut(s)	230
ZrmI	AGTACT	1 cut(s)	1290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.