Rorug04G0380600

Protein ENDOSPERM DEFECTIVE 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005101
Physical Location & Seq
Reverse (-)
55121881 .. 55122258
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0380600.1

Sequence Viewer

Length: 261 bp
ATGCTACTAGGGGAAGGCCTGGGTTGTGCCGAAGGTGAAAAATGGGCGAAATTGCGAAAGATGGCCAACCATGCCTTTCATGGAGAGAGCTTAAAGTTTATGATTCCTGGGATGATAGCCAGTGCAGAGACAATGCTAGAAGGGTGGAAAAGTCATGAAGGAAAAGAAATCGAGGTGTTCGAATTGTTTAGGTTGTTCACTTCAGAAGTGATTTCAAGGACCGCCTTTGGCAGCAGCTACTTAGAAGGAAAGAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

86

Amino Acids

9.62

Weight (kDa)

5.89

Isoelectric Point (pI)

25.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 4 - 80 5.4e-11 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 186
AgsI TTSAA 1 cut(s) 216
AjnI CCWGG 2 cut(s) 18, 106
AluBI AGCT 2 cut(s) 90, 237
AluI AGCT 2 cut(s) 90, 237
Alw26I GTCTC 1 cut(s) 122
AoxI GGCC 2 cut(s) 16, 63
ApeKI GCWGC 2 cut(s) 231, 234
AspS9I GGNCC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 47
AsuII TTCGAA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 219
BalI TGGCCA 1 cut(s) 65
BbvI GCAGC 2 cut(s) 243, 246
BccI CCATC 1 cut(s) 55
BciT130I CCWGG 2 cut(s) 20, 108
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 2 cut(s) 8, 137
BisI GCNGC 2 cut(s) 232, 235
BlsI GCNGC 2 cut(s) 233, 236
Bme1390I CCNGG 2 cut(s) 20, 108
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 219
BmrFI CCNGG 2 cut(s) 20, 108
Bpu14I TTCGAA 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 19, 107
Bse1I ACTGG 1 cut(s) 120
BseBI CCWGG 2 cut(s) 20, 108
BseDI CCNNGG 2 cut(s) 19, 107
BseGI GGATG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 120
BseXI GCAGC 2 cut(s) 243, 246
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 2 cut(s) 18, 65
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 2 cut(s) 18, 65
Bsp119I TTCGAA 1 cut(s) 180
BspACI CCGC 1 cut(s) 222
BspANI GGCC 2 cut(s) 18, 65
BspHI TCATGA 1 cut(s) 154
BspT104I TTCGAA 1 cut(s) 180
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 19, 107
Bst2UI CCWGG 2 cut(s) 20, 108
BstBI TTCGAA 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 2 cut(s) 20, 108
BstSCI CCNGG 2 cut(s) 18, 106
BstV1I GCAGC 2 cut(s) 243, 246
BsuRI GGCC 2 cut(s) 18, 65
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 127
CciI TCATGA 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 219
CviAII CATG 3 cut(s) 71, 80, 155
CviJI RGCY 5 cut(s) 18, 65, 90, 119, 237
CviKI_1 RGCY 5 cut(s) 18, 65, 90, 119, 237
DdeI CTNAG 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 18, 106
FaeI CATG 3 cut(s) 74, 83, 158
FaiI YATR 4 cut(s) 72, 81, 101, 156
FatI CATG 3 cut(s) 70, 79, 154
Fnu4HI GCNGC 2 cut(s) 232, 235
FokI GGATG 1 cut(s) 124
Fsp4HI GCNGC 2 cut(s) 232, 235
FspBI CTAG 2 cut(s) 8, 137
GluI GCNGC 2 cut(s) 232, 235
HaeIII GGCC 2 cut(s) 18, 65
Hin1II CATG 3 cut(s) 74, 83, 158
HinfI GANTC 1 cut(s) 103
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 5 cut(s) 8, 26, 134, 152, 239
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 241
Hsp92II CATG 3 cut(s) 74, 83, 158
LpnPI CCDG 5 cut(s) 5, 32, 93, 120, 133
Lsp1109I GCAGC 2 cut(s) 243, 246
MaeI CTAG 2 cut(s) 8, 137
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 2 cut(s) 50, 182
MluNI TGGCCA 1 cut(s) 65
MnlI CCTC 1 cut(s) 166
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MseI TTAA 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 20, 108
MvaI CCWGG 2 cut(s) 20, 108
MwoI GCNNNNNNNGC 1 cut(s) 71
NlaIII CATG 3 cut(s) 74, 83, 158
NspV TTCGAA 1 cut(s) 180
PagI TCATGA 1 cut(s) 154
PceI AGGCCT 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 2 cut(s) 233, 236
Psp6I CCWGG 2 cut(s) 18, 106
PspGI CCWGG 2 cut(s) 18, 106
PspPI GGNCC 1 cut(s) 219
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 2 cut(s) 232, 235
Sau96I GGNCC 1 cut(s) 219
ScrFI CCNGG 2 cut(s) 20, 108
SetI ASST 5 cut(s) 37, 92, 177, 194, 239
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 1 cut(s) 219
Sse9I AATT 2 cut(s) 50, 182
SseBI AGGCCT 1 cut(s) 18
SsiI CCGC 1 cut(s) 222
SspMI CTAG 2 cut(s) 8, 137
StuI AGGCCT 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 18, 106
TaqI TCGA 2 cut(s) 171, 180
TasI AATT 2 cut(s) 50, 182
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 1 cut(s) 127
TseI GCWGC 2 cut(s) 231, 234
TspDTI ATGAA 2 cut(s) 68, 171
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 219
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XspI CTAG 2 cut(s) 8, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.