Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005101

Physical Location & Seq

Genomic Coordinates Reverse (-)

50796434 .. 50799685

Gene Structure 3252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1208400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCGAGGTTCAGACTCATTCAGCAGCGGTCTACCAACCTCATTCAGCAGCGGTCTACCAACGTAACTGCCACAGCTGCTGCTAAGCTCTTGCAGTCTAACGGGATGTCTTTACCTACTGAGGCCACTTGTCCGGATGTCAGTAATCATAGTCAAACGCCAAGCAGCACAGCACGGTGTCTTCCTGATATTCGTTCTTCCATGCCTGAGGCCGATTTGTTGCCAACCGTTTCTAGCAGGCAGCTCGTTGAGAAAAGTAGCAGCAGGGGTAATGCCACTGGCGATTTTTCAAAGTATTCTGCTTCCCCTTGCTCCCGTTCTCTTAACTTGTCATTATCAAGTTCCGATAGCTCGTTCTTCCTGACAGACAAAGGCAGTGAAAAATTGGCATCGGCTATCTCCAAGACATATACAAACGGAGGGAAGACGGGTGGTCTATGCCTTCCTCCAGTCCCACCATGTGCTAGTGTAAAGCCGGGCCCAGATATGAGGAAGGGAAAGAAAATTTCTAGCCATCTGGAAGATGTACATTCCTTGAGAGTGCTCCAGAACCGCTATCTACAGTGGACATACGCCAATGCAAGAGCAGAGGCTTCCATGCGAGCTCAGCAGAGAGAAACCCTGAGAACACTTTATTCTCTTGCGGTAAAGATTGCTGAACTATATGATTCTGCGAAGAGGAAACGGATAGAACTTGGCATTTTGCAAAGAACAAAGACTTTATCAACAATTCTCGAAGCTCAAGTAAGGCTGCCACTTGCCAGCGTTTCCTGCCTTGTAACCTGCCTTCAAGGTGCGGTCAAGAACATAGTGGAGTCCAAATCTTTCATGATTCCATATTTGGACCAGTGGTTTTCTCTTCAAGGGGATTATTCAATTTATCTGGCAGAAGCAACTCAAGCATTGTTGAATGCCTCAGTTCAACTTCCAAGTAGTGGCAGTGTTACGGCCAATCTACCAGAGTTAGAAGAGACATTGAGCTCAGCAATAGAAGTGATGGACACAATAGTTTTCCATGTTCAGCGATCTATGCCAAAGGCAGAAGAAACAGAAGATTTGGTTTCAGAACCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

359

Amino Acids

39.06

Weight (kDa)

8.76

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QWRF	PF04484	48 - 250	2.4e-24	QWRF family
QWRF	PF04484	278 - 356	6e-13	QWRF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44190 AT3G60000 AT3G60000
fragaria_vesca	FvH4_3g00020 FvH4_3g00020 FvH4_3g00020 FvH4_3g00020
malus_domestica	MD00G1208400.v1.1 MD00G1208500.v1.1 MD10G1342500.v1.1
prunus_persica	Prupe.4G000100_v2.0.a1 Prupe.4G000100_v2.0.a1 Prupe.4G000100_v2.0.a1 Prupe.4G000100_v2.0.a1 Prupe.4G000100_v2.0.a1
pyrus_communis	pycom10g29180
rosa_chinensis	RchiOBHm_Chr5g0000021
rosa_laevigata	RLG00000030833
rosa_multiflora	Rmu_co8262249.1_g000001 Rmu_sc0007644.1_g000013
rosa_roxburghii	Rroxscaffold_1G00076040
rosa_rugosa	Rorug04G0380400.1 Rorug04G0380500 Rorug04G0380600 Rorug04G0380700
rosa_samantha	Rh5AG000300 Rh5BG001500 Rh5CG000300 Rh5DG000300
rosa_wichuraiana	Rw5G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	791
AccB7I	CCANNNNNTGG	1 cut(s)	935
AccI	GTMKAC	2 cut(s)	32, 56
AccIII	TCCGGA	1 cut(s)	133
AciI	CCGC	5 cut(s)	28, 52, 553, 644, 797
AcoI	YGGCCR	1 cut(s)	948
AcsI	RAATTY	1 cut(s)	504
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	1 cut(s)	935
AgsI	TTSAA	6 cut(s)	291, 791, 863, 876, 910, 923
AhdI	GACNNNNNGTC	1 cut(s)	432
AluBI	AGCT	7 cut(s)	77, 88, 244, 351, 605, 740, 981
AluI	AGCT	7 cut(s)	77, 88, 244, 351, 605, 740, 981
Alw21I	GWGCWC	3 cut(s)	546, 607, 983
Alw26I	GTCTC	1 cut(s)	965
AlwNI	CAGNNNCTG	1 cut(s)	80
Aor13HI	TCCGGA	1 cut(s)	133
AoxI	GGCC	4 cut(s)	123, 210, 478, 948
ApaI	GGGCCC	1 cut(s)	482
ApeKI	GCWGC	8 cut(s)	25, 49, 77, 80, 165, 241, 261, 751
ApoI	RAATTY	1 cut(s)	504
AspS9I	GGNCC	3 cut(s)	478, 479, 844
AsuC2I	CCSGG	1 cut(s)	477
AvaII	GGWCC	1 cut(s)	844
AxyI	CCTNAGG	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	482
BanII	GRGCYC	3 cut(s)	482, 607, 983
BarI	GAAGNNNNNNTAC	2 cut(s)	771, 803
BbsI	GAAGAC	2 cut(s)	173, 431
Bbv12I	GWGCWC	3 cut(s)	546, 607, 983
BbvI	GCAGC	8 cut(s)	37, 61, 64, 67, 177, 253, 273, 738
BccI	CCATC	2 cut(s)	522, 991
BceAI	ACGGC	1 cut(s)	963
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	965
BfaI	CTAG	3 cut(s)	234, 465, 510
BfmI	CTRYAG	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	791
BisI	GCNGC	8 cut(s)	26, 50, 78, 81, 166, 242, 262, 752
BlpI	GCTNAGC	3 cut(s)	84, 606, 982
BlsI	GCNGC	8 cut(s)	27, 51, 79, 82, 167, 243, 263, 753
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	1 cut(s)	844
BmeRI	GACNNNNNGTC	1 cut(s)	432
BmgT120I	GGNCC	3 cut(s)	478, 479, 844
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	1 cut(s)	398
BpiI	GAAGAC	2 cut(s)	173, 431
BpmI	CTGGAG	2 cut(s)	432, 530
Bpu1102I	GCTNAGC	3 cut(s)	84, 606, 982
BpuEI	CTTGAG	3 cut(s)	556, 726, 882
BpuMI	CCSGG	1 cut(s)	477
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	935
Bse1I	ACTGG	3 cut(s)	283, 449, 847
Bse21I	CCTNAGG	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	133
BseGI	GGATG	2 cut(s)	111, 142
BseLI	CCNNNNNNNGG	1 cut(s)	935
BseMII	CTCAG	6 cut(s)	111, 198, 614, 620, 930, 996
BseNI	ACTGG	3 cut(s)	283, 449, 847
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	8 cut(s)	37, 61, 64, 67, 177, 253, 273, 738
BshFI	GGCC	4 cut(s)	125, 212, 480, 950
BsiHKAI	GWGCWC	3 cut(s)	546, 607, 983
BsiSI	CCGG	2 cut(s)	134, 476
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	935
BsmAI	GTCTC	1 cut(s)	965
BsmFI	GGGAC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	916
BsnI	GGCC	4 cut(s)	125, 212, 480, 950
Bsp120I	GGGCCC	1 cut(s)	478
Bsp1286I	GDGCHC	4 cut(s)	482, 546, 607, 983
Bsp13I	TCCGGA	1 cut(s)	133
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	1 cut(s)	1025
Bsp1720I	GCTNAGC	3 cut(s)	84, 606, 982
BspACI	CCGC	5 cut(s)	28, 52, 553, 644, 797
BspANI	GGCC	4 cut(s)	125, 212, 480, 950
BspCNI	CTCAG	6 cut(s)	112, 199, 615, 619, 929, 995
BspEI	TCCGGA	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	1 cut(s)	480
BspMI	ACCTGC	1 cut(s)	791
BsrGI	TGTACA	1 cut(s)	526
BsrI	ACTGG	3 cut(s)	283, 449, 847
BssMI	GATC	1 cut(s)	1025
Bst4CI	ACNGT	3 cut(s)	177, 229, 564
Bst6I	CTCTTC	3 cut(s)	671, 864, 963
BstAUI	TGTACA	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	239, 603, 763
BstDEI	CTNAG	7 cut(s)	84, 120, 207, 606, 623, 916, 982
BstF5I	GGATG	2 cut(s)	111, 142
BstKTI	GATC	1 cut(s)	1028
BstMAI	GTCTC	1 cut(s)	965
BstMBI	GATC	1 cut(s)	1025
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 607, 771, 899, 1030
BstSCI	CCNGG	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	560
BstSLI	GKGCMC	1 cut(s)	482
BstV1I	GCAGC	8 cut(s)	37, 61, 64, 67, 177, 253, 273, 738
BstV2I	GAAGAC	2 cut(s)	173, 431
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	4 cut(s)	125, 212, 480, 950
BtsCI	GGATG	2 cut(s)	111, 142
BtsI	GCAGTG	2 cut(s)	382, 946
BtsIMutI	CAGTG	5 cut(s)	276, 382, 569, 854, 946
BveI	ACCTGC	1 cut(s)	791
Cac8I	GCNNGC	3 cut(s)	239, 603, 763
CaiI	CAGNNNCTG	1 cut(s)	80
CciI	TCATGA	1 cut(s)	828
Cfr13I	GGNCC	3 cut(s)	478, 479, 844
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	5 cut(s)	202, 459, 598, 829, 1016
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	7 cut(s)	84, 120, 207, 606, 623, 916, 982
DpnI	GATC	1 cut(s)	1027
DpnII	GATC	1 cut(s)	1025
DraIII	CACNNNGTG	1 cut(s)	461
DriI	GACNNNNNGTC	1 cut(s)	432
EaeI	YGGCCR	1 cut(s)	948
Eam1104I	CTCTTC	3 cut(s)	671, 864, 963
Eam1105I	GACNNNNNGTC	1 cut(s)	432
EarI	CTCTTC	3 cut(s)	671, 864, 963
Ecl136II	GAGCTC	2 cut(s)	605, 981
Eco24I	GRGCYC	3 cut(s)	482, 607, 983
Eco47I	GGWCC	1 cut(s)	844
Eco53kI	GAGCTC	2 cut(s)	605, 981
Eco81I	CCTNAGG	1 cut(s)	207
EcoICRI	GAGCTC	2 cut(s)	605, 981
EcoT38I	GRGCYC	3 cut(s)	482, 607, 983
FaeI	CATG	5 cut(s)	205, 462, 601, 832, 1019
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	5 cut(s)	201, 458, 597, 828, 1015
FblI	GTMKAC	2 cut(s)	32, 56
Fnu4HI	GCNGC	8 cut(s)	26, 50, 78, 81, 166, 242, 262, 752
FokI	GGATG	2 cut(s)	118, 149
FriOI	GRGCYC	3 cut(s)	482, 607, 983
Fsp4HI	GCNGC	8 cut(s)	26, 50, 78, 81, 166, 242, 262, 752
FspBI	CTAG	3 cut(s)	234, 465, 510
GluI	GCNGC	8 cut(s)	26, 50, 78, 81, 166, 242, 262, 752
GsuI	CTGGAG	2 cut(s)	432, 530
HaeIII	GGCC	4 cut(s)	125, 212, 480, 950
HapII	CCGG	2 cut(s)	134, 476
Hin1II	CATG	5 cut(s)	205, 462, 601, 832, 1019
HinfI	GANTC	4 cut(s)	15, 668, 815, 832
HpaII	CCGG	2 cut(s)	134, 476
Hpy166II	GTNNAC	3 cut(s)	33, 57, 567
Hpy188I	TCNGA	3 cut(s)	14, 346, 1066
Hpy188III	TCNNGA	8 cut(s)	134, 185, 361, 518, 547, 734, 802, 829
Hpy8I	GTNNAC	3 cut(s)	33, 57, 567
HpyAV	CCTTC	3 cut(s)	452, 487, 797
HpyCH4III	ACNGT	3 cut(s)	177, 229, 564
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	94, 581, 706
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 607, 771, 899, 1030
HpyF3I	CTNAG	7 cut(s)	84, 120, 207, 606, 623, 916, 982
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	205, 462, 601, 832, 1019
Kpn2I	TCCGGA	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	1025
LmnI	GCTCC	2 cut(s)	317, 549
Lsp1109I	GCAGC	8 cut(s)	37, 61, 64, 67, 177, 253, 273, 738
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	3 cut(s)	234, 465, 510
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	64, 778, 943
MalI	GATC	1 cut(s)	1027
MboI	GATC	1 cut(s)	1025
MhlI	GDGCHC	4 cut(s)	482, 546, 607, 983
MluCI	AATT	4 cut(s)	383, 504, 729, 876
MlyI	GAGTC	2 cut(s)	9, 824
MnlI	CCTC	9 cut(s)	50, 115, 202, 413, 456, 483, 583, 672, 925
MroI	TCCGGA	1 cut(s)	133
MseI	TTAA	1 cut(s)	324
MspA1I	CMGCKG	3 cut(s)	28, 52, 77
MspI	CCGG	2 cut(s)	134, 476
MspR9I	CCNGG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	916
MwoI	GCNNNNNNNGC	5 cut(s)	77, 607, 771, 899, 1030
NciI	CCSGG	1 cut(s)	477
NdeII	GATC	1 cut(s)	1025
NlaIII	CATG	5 cut(s)	205, 462, 601, 832, 1019
NlaIV	GGNNCC	1 cut(s)	480
PagI	TCATGA	1 cut(s)	828
PctI	GAATGC	1 cut(s)	916
PfeI	GAWTC	2 cut(s)	668, 832
PflMI	CCANNNNNTGG	1 cut(s)	935
PkrI	GCNGC	8 cut(s)	27, 51, 79, 82, 167, 243, 263, 753
PleI	GAGTC	2 cut(s)	9, 823
PpsI	GAGTC	2 cut(s)	9, 823
Psp124BI	GAGCTC	2 cut(s)	607, 983
PspN4I	GGNNCC	1 cut(s)	480
PspOMI	GGGCCC	1 cut(s)	478
PspPI	GGNCC	3 cut(s)	478, 479, 844
PstNI	CAGNNNCTG	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SacI	GAGCTC	2 cut(s)	607, 983
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	8 cut(s)	26, 50, 78, 81, 166, 242, 262, 752
Sau3AI	GATC	1 cut(s)	1025
Sau96I	GGNCC	3 cut(s)	478, 479, 844
SchI	GAGTC	2 cut(s)	9, 824
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	4 cut(s)	482, 546, 607, 983
SfaNI	GCATC	1 cut(s)	398
SfcI	CTRYAG	1 cut(s)	560
SinI	GGWCC	1 cut(s)	844
SmlI	CTYRAG	3 cut(s)	535, 741, 897
SmoI	CTYRAG	3 cut(s)	535, 741, 897
Sse9I	AATT	4 cut(s)	383, 504, 729, 876
SsiI	CCGC	5 cut(s)	28, 52, 553, 644, 797
SspMI	CTAG	3 cut(s)	234, 465, 510
SstI	GAGCTC	2 cut(s)	607, 983
StyD4I	CCNGG	1 cut(s)	475
TaaI	ACNGT	3 cut(s)	177, 229, 564
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	5, 735
TasI	AATT	4 cut(s)	383, 504, 729, 876
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	2 cut(s)	668, 832
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	5 cut(s)	283, 382, 569, 854, 946
TseI	GCWGC	8 cut(s)	25, 49, 77, 80, 165, 241, 261, 751
TspDTI	ATGAA	1 cut(s)	817
TspGWI	ACGGA	2 cut(s)	432, 700
TspRI	CASTG	5 cut(s)	283, 382, 569, 854, 946
Van91I	CCANNNNNTGG	1 cut(s)	935
VpaK11BI	GGWCC	1 cut(s)	844
XapI	RAATTY	1 cut(s)	504
XmiI	GTMKAC	2 cut(s)	32, 56
XspI	CTAG	3 cut(s)	234, 465, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.